Wall clock time and date at job start Tue Mar 31 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.63023 * 2 1 4 4 C 1.53006 * 109.78765 * 120.49167 * 2 1 3 5 5 C 1.50094 * 110.19181 * 169.35843 * 4 2 1 6 6 C 1.31655 * 123.77716 * 343.31448 * 5 4 2 7 7 C 1.46951 * 118.10818 * 180.14651 * 6 5 4 8 8 O 1.21534 * 119.99923 * 359.73348 * 7 6 5 9 9 O 1.34793 * 119.99977 * 179.73836 * 7 6 5 10 10 C 1.45196 * 117.00180 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47159 * 329.99903 * 10 9 7 12 12 C 1.50709 * 109.47282 * 210.00002 * 10 9 7 13 13 H 1.07998 * 119.99597 * 359.97438 * 12 10 9 14 14 C 1.37874 * 119.99915 * 180.02562 * 12 10 9 15 15 N 1.31510 * 120.00201 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99900 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47128 * 59.98972 * 16 14 12 18 18 H 1.48493 * 109.47314 * 179.97438 * 16 14 12 19 19 H 1.48509 * 109.46898 * 299.99317 * 16 14 12 20 20 C 1.50697 * 109.47529 * 89.99888 * 10 9 7 21 21 C 1.34511 * 125.79278 * 220.00341 * 20 10 9 22 22 C 1.41386 * 106.84141 * 180.02562 * 21 20 10 23 23 C 1.34507 * 106.84010 * 0.02562 * 22 21 20 24 24 O 1.34304 * 108.42311 * 359.97438 * 23 22 21 25 25 C 1.50086 * 123.77741 * 359.86315 * 6 5 4 26 26 C 1.53012 * 110.13864 * 343.10957 * 25 6 5 27 27 H 1.08996 * 109.47557 * 180.38986 * 1 2 3 28 28 H 1.09007 * 109.47299 * 300.39549 * 1 2 3 29 29 H 1.09004 * 109.47127 * 60.39022 * 1 2 3 30 30 H 1.08998 * 109.36116 * 289.76494 * 4 2 1 31 31 H 1.09004 * 109.36326 * 49.49470 * 4 2 1 32 32 H 1.08000 * 118.11275 * 163.03548 * 5 4 2 33 33 H 0.97001 * 119.99955 * 180.02562 * 15 14 12 34 34 H 1.07999 * 126.58024 * 359.97438 * 21 20 10 35 35 H 1.08004 * 126.57483 * 179.97438 * 22 21 20 36 36 H 1.08004 * 125.79019 * 180.26381 * 23 22 21 37 37 H 1.09001 * 109.35996 * 103.31379 * 25 6 5 38 38 H 1.09001 * 109.36402 * 222.90285 * 25 6 5 39 39 H 1.08998 * 109.62850 * 169.46542 * 26 25 6 40 40 H 1.08998 * 109.62710 * 290.05371 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0480 -0.7305 1.2406 5 6 3.5261 -0.9642 1.1248 6 6 4.1939 -0.8810 -0.0068 7 6 5.6404 -1.1381 0.0224 8 8 6.1876 -1.4134 1.0721 9 8 6.3604 -1.0684 -1.1149 10 6 7.7842 -1.3337 -1.0112 11 1 8.1384 -1.0354 -0.0245 12 6 8.5197 -0.5494 -2.0672 13 1 7.9717 0.0847 -2.7485 14 6 9.8919 -0.6421 -2.1642 15 7 10.5590 -1.4146 -1.3349 16 14 10.8035 0.3306 -3.4727 17 1 10.5550 1.7811 -3.2743 18 1 12.2596 0.0592 -3.3666 19 1 10.3206 -0.0750 -4.8173 20 6 8.0369 -2.8057 -1.2116 21 6 8.9185 -3.5534 -0.5238 22 6 8.8277 -4.8683 -1.0356 23 6 7.8965 -4.8453 -2.0059 24 8 7.4207 -3.5935 -2.1080 25 6 3.5618 -0.5447 -1.3259 26 6 2.0452 -0.7308 -1.2460 27 1 -0.3634 -1.0276 0.0070 28 1 -0.3634 0.5200 0.8865 29 1 -0.3633 0.5078 -0.8935 30 1 1.8431 -0.1289 2.1261 31 1 1.5419 -1.6916 1.3317 32 1 4.0742 -1.2106 2.0222 33 1 11.5244 -1.4796 -1.4030 34 1 9.5711 -3.2143 0.2670 35 1 9.3974 -5.7262 -0.7104 36 1 7.5811 -5.6911 -2.5989 37 1 3.7858 0.4912 -1.5802 38 1 3.9661 -1.1997 -2.0977 39 1 1.5773 -0.3109 -2.1364 40 1 1.8100 -1.7925 -1.1713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518001432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:34 Heat of formation + Delta-G solvation = -92.802707 kcal Electronic energy + Delta-G solvation = -23243.479026 eV Core-core repulsion = 19795.891655 eV Total energy + Delta-G solvation = -3447.587372 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.20883 -41.44565 -39.39605 -37.54808 -35.31891 -33.85858 -33.58006 -31.84425 -31.49328 -28.73068 -28.01666 -25.31403 -24.04967 -23.46989 -22.39325 -21.66791 -21.14513 -19.49343 -18.75616 -18.48074 -18.20422 -17.41159 -16.81326 -16.73668 -16.36236 -15.40780 -15.22811 -15.07279 -14.84737 -14.49132 -14.07643 -14.03182 -13.62792 -13.51997 -13.51127 -13.37484 -13.10690 -13.07476 -12.86276 -12.80604 -12.42464 -12.23394 -12.07174 -11.86524 -11.44845 -11.39188 -11.16843 -11.14377 -10.82529 -10.54935 -10.12205 -9.15114 -8.26243 -6.55380 0.17431 1.06833 1.37673 1.42463 1.49576 1.85930 1.93074 2.10175 2.38621 2.40738 2.98885 3.61571 3.70286 3.95662 4.02219 4.15932 4.22869 4.30845 4.36931 4.52678 4.58545 4.62019 4.63649 4.78771 4.85214 4.97522 5.01987 5.08412 5.11501 5.13971 5.25310 5.29956 5.35101 5.38483 5.41802 5.52274 5.58801 5.63789 5.66244 5.79501 5.91690 6.45656 6.54203 6.86181 7.16459 8.71105 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018278 B = 0.004603 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.540544 B = 6081.404185 C = 6808.557510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.071 0.929 4 C -0.084 4.084 5 C -0.049 4.049 6 C -0.169 4.169 7 C 0.476 3.524 8 O -0.557 6.557 9 O -0.349 6.349 10 C 0.300 3.700 11 H 0.039 0.961 12 C -0.558 4.558 13 H 0.074 0.926 14 C 0.025 3.975 15 N -0.892 5.892 16 Si 0.982 3.018 17 H -0.262 1.262 18 H -0.275 1.275 19 H -0.268 1.268 20 C -0.004 4.004 21 C -0.193 4.193 22 C -0.226 4.226 23 C -0.070 4.070 24 O -0.195 6.195 25 C -0.074 4.074 26 C -0.107 4.107 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.271 0.729 34 H 0.121 0.879 35 H 0.167 0.833 36 H 0.241 0.759 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.377 -0.773 0.886 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.121 4.121 5 C -0.068 4.068 6 C -0.170 4.170 7 C 0.325 3.675 8 O -0.451 6.451 9 O -0.265 6.265 10 C 0.246 3.754 11 H 0.057 0.943 12 C -0.595 4.595 13 H 0.092 0.908 14 C -0.178 4.178 15 N -0.526 5.526 16 Si 0.805 3.195 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.193 1.193 20 C -0.055 4.055 21 C -0.213 4.213 22 C -0.245 4.245 23 C -0.137 4.137 24 O -0.092 6.092 25 C -0.111 4.111 26 C -0.144 4.144 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.185 0.815 36 H 0.257 0.743 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.200 -0.822 1.024 17.250 hybrid contribution 1.839 0.105 -0.093 1.845 sum -15.361 -0.717 0.930 15.406 Atomic orbital electron populations 1.21768 0.92834 1.02557 1.02566 1.21261 0.97063 0.99419 0.93684 0.91004 1.20799 0.88274 1.02845 1.00148 1.23284 0.98431 0.89261 0.95837 1.20299 0.87248 1.09936 0.99506 1.22610 0.90718 0.72649 0.81559 1.90743 1.73828 1.47397 1.33128 1.86629 1.24350 1.80017 1.35547 1.18751 0.73525 0.84737 0.98386 0.94345 1.21109 0.92243 1.28118 1.18032 0.90817 1.25849 0.97445 0.95967 0.98587 1.70163 1.08609 1.36752 1.37092 0.85246 0.76953 0.78967 0.78354 1.18674 1.20028 1.19318 1.23318 0.97827 0.93470 0.90845 1.21285 1.02143 0.93509 1.04354 1.22042 1.03436 0.97836 1.01226 1.24705 1.00021 0.86016 1.02912 1.83961 1.55255 1.19812 1.50215 1.20312 0.96713 1.02100 0.92009 1.21689 0.92164 1.01381 0.99202 0.91963 0.91648 0.91961 0.87696 0.87664 0.87171 0.91974 0.86068 0.81519 0.74270 0.90516 0.91729 0.89525 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.20 71.98 0.66 -0.87 16 2 C -0.10 -1.52 2.76 -10.67 -0.03 -1.55 16 3 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 4 C -0.08 -1.42 5.43 29.66 0.16 -1.26 16 5 C -0.05 -1.35 9.42 24.84 0.23 -1.12 16 6 C -0.17 -5.74 5.79 -18.42 -0.11 -5.85 16 7 C 0.48 22.23 7.81 70.10 0.55 22.77 16 8 O -0.56 -28.98 15.22 19.72 0.30 -28.68 16 9 O -0.35 -18.21 9.16 -55.09 -0.50 -18.71 16 10 C 0.30 17.36 2.42 29.10 0.07 17.43 16 11 H 0.04 2.46 7.15 -2.39 -0.02 2.45 16 12 C -0.56 -32.70 8.89 25.60 0.23 -32.47 16 13 H 0.07 4.22 7.81 -2.91 -0.02 4.19 16 14 C 0.02 1.39 5.30 84.65 0.45 1.84 16 15 N -0.89 -51.59 10.95 21.45 0.23 -51.35 16 16 Si 0.98 43.70 29.54 68.60 2.03 45.73 16 17 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 20 C 0.00 -0.23 5.53 24.83 0.14 -0.09 16 21 C -0.19 -10.18 9.17 22.19 0.20 -9.97 16 22 C -0.23 -9.64 10.91 22.19 0.24 -9.40 16 23 C -0.07 -2.82 12.09 66.97 0.81 -2.01 16 24 O -0.20 -9.89 10.65 -1.35 -0.01 -9.91 16 25 C -0.07 -2.10 5.45 29.66 0.16 -1.94 16 26 C -0.11 -2.05 5.29 30.72 0.16 -1.89 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.11 1.45 8.11 -2.39 -0.02 1.43 16 32 H 0.11 3.32 7.17 -2.91 -0.02 3.30 16 33 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 34 H 0.12 6.72 7.87 -2.91 -0.02 6.69 16 35 H 0.17 5.72 8.06 -2.91 -0.02 5.69 16 36 H 0.24 6.53 8.06 -2.91 -0.02 6.51 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.06 2.06 7.93 -2.39 -0.02 2.05 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 Total: -1.00 -73.37 337.85 7.00 -66.37 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 1.03 Total: 22.93 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 3.93 Total: -26.38 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.23 Total: -51.35 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: -0.22 Total: -57.30 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -73.37 7.00 -66.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.433 kcal (2) G-P(sol) polarization free energy of solvation -73.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds