Wall clock time and date at job start Tue Mar 31 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47532 * 280.23912 * 3 2 1 5 5 C 1.52996 * 109.47271 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46953 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.46952 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47298 * 180.02562 * 7 6 5 9 9 O 1.20833 * 119.99655 * 359.97438 * 8 7 6 10 10 O 1.34222 * 120.00432 * 180.27351 * 8 7 6 11 11 C 1.45201 * 117.00137 * 179.71953 * 10 8 7 12 12 H 1.08993 * 109.47491 * 330.00073 * 11 10 8 13 13 C 1.50706 * 109.46887 * 90.00045 * 11 10 8 14 14 H 1.08001 * 119.99914 * 239.99856 * 13 11 10 15 15 C 1.37878 * 119.99966 * 60.00384 * 13 11 10 16 16 N 1.31520 * 119.99989 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00079 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47012 * 59.99575 * 17 15 13 19 19 H 1.48497 * 109.47172 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47135 * 299.99921 * 17 15 13 21 21 C 1.50704 * 109.46907 * 209.99697 * 11 10 8 22 22 C 1.34516 * 125.78433 * 145.00355 * 21 11 10 23 23 C 1.41385 * 106.84086 * 179.97438 * 22 21 11 24 24 C 1.34521 * 106.83744 * 0.02562 * 23 22 21 25 25 O 1.34299 * 125.79250 * 324.69650 * 21 11 10 26 26 H 4.44648 * 5.63391 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.47225 * 160.24001 * 3 2 1 28 28 H 1.08998 * 109.47360 * 40.24219 * 3 2 1 29 29 H 1.09008 * 109.46645 * 60.00108 * 4 3 2 30 30 H 1.08998 * 109.47049 * 300.00498 * 4 3 2 31 31 H 1.09000 * 109.47439 * 60.00118 * 5 4 3 32 32 H 1.08998 * 109.47408 * 300.00176 * 5 4 3 33 33 H 1.08994 * 109.47101 * 60.00033 * 6 5 4 34 34 H 1.09006 * 109.46726 * 299.99825 * 6 5 4 35 35 H 1.09000 * 109.47764 * 59.99520 * 7 6 5 36 36 H 1.09006 * 109.46938 * 299.99298 * 7 6 5 37 37 H 0.97003 * 119.99499 * 180.02562 * 16 15 13 38 38 H 1.07996 * 126.58313 * 0.03006 * 22 21 11 39 39 H 1.07992 * 126.58013 * 179.97438 * 23 22 21 40 40 H 1.07996 * 125.78786 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1562 -0.2555 1.4195 5 6 4.6861 -0.2542 1.4195 6 6 5.1963 -0.5110 2.8390 7 6 6.7262 -0.5091 2.8392 8 6 7.2288 -0.7626 4.2370 9 8 6.4437 -0.9275 5.1406 10 8 8.5484 -0.7994 4.4795 11 6 8.9602 -1.0421 5.8506 12 1 8.2074 -0.6456 6.5317 13 6 9.1096 -2.5248 6.0752 14 1 8.5107 -3.0205 6.8249 15 6 10.0110 -3.2485 5.3236 16 7 10.7400 -2.6450 4.4103 17 14 10.1967 -5.0862 5.6024 18 1 8.8971 -5.7590 5.3499 19 1 11.2220 -5.6266 4.6740 20 1 10.6182 -5.3341 7.0046 21 6 10.2792 -0.3598 6.1072 22 6 10.6572 0.2113 7.2650 23 6 11.9584 0.7259 7.0622 24 6 12.2974 0.4389 5.7924 25 8 11.2787 -0.2238 5.2206 26 1 -1.0499 0.0002 0.0002 27 1 3.0089 0.9680 -0.3474 28 1 3.0097 -0.7836 -0.6639 29 1 2.7932 -1.2229 1.7669 30 1 2.7924 0.5287 2.0834 31 1 5.0487 0.7133 1.0723 32 1 5.0502 -1.0382 0.7556 33 1 4.8338 -1.4786 3.1858 34 1 4.8322 0.2728 3.5033 35 1 7.0885 0.4588 2.4924 36 1 7.0906 -1.2927 2.1748 37 1 11.3738 -3.1543 3.8814 38 1 10.0784 0.2655 8.1751 39 1 12.5636 1.2496 7.7872 40 1 13.2323 0.6935 5.3154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526994087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:20 Heat of formation + Delta-G solvation = -40.727477 kcal Electronic energy + Delta-G solvation = -22178.768505 eV Core-core repulsion = 18733.439285 eV Total energy + Delta-G solvation = -3445.329220 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.30368 -39.21741 -36.66825 -35.44979 -33.83215 -32.92240 -31.82721 -31.20769 -29.82235 -27.49858 -26.42849 -23.73018 -22.63592 -21.09710 -20.62868 -19.59574 -19.37072 -18.19873 -17.06184 -16.51453 -16.21275 -16.00341 -15.20802 -14.93104 -14.79360 -14.43867 -14.33129 -13.82191 -13.63605 -13.20476 -12.73937 -12.26623 -12.09520 -11.89026 -11.74410 -11.51433 -11.47251 -11.25732 -11.16962 -10.98352 -10.96384 -10.91665 -10.45266 -10.38147 -10.27161 -10.25751 -9.81364 -9.43223 -9.04707 -8.81880 -8.74441 -7.33335 -6.21417 -4.43387 2.63501 2.66464 2.92236 3.21908 3.26027 3.28780 3.33170 3.59019 3.91997 4.19828 4.25776 4.27649 4.86397 4.91213 5.01383 5.11153 5.26784 5.35226 5.50244 5.61725 5.65705 5.76776 5.80918 5.87812 5.94877 5.95472 6.00008 6.05548 6.14914 6.39192 6.41245 6.49855 6.52240 6.81645 6.91431 7.21768 7.44114 7.49651 7.63217 7.81576 7.84993 8.42112 8.60158 9.02562 9.30538 10.77651 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.003267 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.671260 B = 8568.937787 C = 9482.391325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.181 4.181 3 C -0.016 4.016 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.107 4.107 7 C -0.115 4.115 8 C 0.457 3.543 9 O -0.534 6.534 10 O -0.336 6.336 11 C 0.279 3.721 12 H 0.070 0.930 13 C -0.549 4.549 14 H 0.073 0.927 15 C 0.080 3.920 16 N -0.827 5.827 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.273 1.273 21 C 0.082 3.918 22 C -0.266 4.266 23 C -0.221 4.221 24 C -0.083 4.083 25 O -0.116 6.116 26 H 0.215 0.785 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.267 0.733 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.091 6.029 -7.363 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.181 4.181 3 C -0.053 4.053 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.144 4.144 7 C -0.153 4.153 8 C 0.300 3.700 9 O -0.425 6.425 10 O -0.251 6.251 11 C 0.227 3.773 12 H 0.088 0.912 13 C -0.585 4.585 14 H 0.091 0.909 15 C -0.130 4.130 16 N -0.460 5.460 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.198 1.198 21 C 0.028 3.972 22 C -0.285 4.285 23 C -0.241 4.241 24 C -0.152 4.152 25 O -0.008 6.008 26 H 0.232 0.768 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.102 5.860 -7.527 12.515 hybrid contribution 0.242 -1.036 0.520 1.185 sum -7.859 4.823 -7.006 11.581 Atomic orbital electron populations 1.24889 0.95998 1.01671 1.01197 1.23285 0.94743 0.99982 1.00132 1.18826 0.84440 1.03201 0.98788 1.21549 0.95771 1.02785 0.95103 1.21615 0.94416 1.02260 0.97410 1.21381 0.93297 1.03491 0.96253 1.21333 0.96275 1.04476 0.93253 1.23266 0.82388 0.73139 0.91162 1.90540 1.57427 1.47370 1.47207 1.86719 1.22776 1.79464 1.36173 1.18760 0.85189 0.94695 0.78699 0.91203 1.21209 1.23872 0.91018 1.22401 0.90896 1.25162 0.94334 0.99250 0.94301 1.70049 1.20850 1.35958 1.19156 0.86561 0.78189 0.84366 0.78505 1.19743 1.20859 1.19771 1.22849 0.90640 0.95382 0.88285 1.21170 0.98236 1.09718 0.99378 1.21495 0.97619 1.07799 0.97146 1.23790 0.94521 1.02260 0.94614 1.84415 1.21175 1.56285 1.38935 0.76808 0.89542 0.89509 0.91417 0.91482 0.91613 0.91525 0.91049 0.91273 0.88802 0.88408 0.92257 0.84954 0.85171 0.80030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.06 19.25 29.55 0.57 -1.49 16 2 C -0.18 -1.87 13.34 -37.12 -0.50 -2.36 16 3 C -0.02 -0.14 5.70 -29.52 -0.17 -0.31 16 4 C -0.11 -1.09 5.17 -26.73 -0.14 -1.23 16 5 C -0.12 -1.19 5.21 -26.73 -0.14 -1.33 16 6 C -0.11 -1.44 4.50 -26.73 -0.12 -1.56 16 7 C -0.12 -1.82 5.81 -27.89 -0.16 -1.98 16 8 C 0.46 9.99 7.92 36.00 0.29 10.28 16 9 O -0.53 -12.75 15.20 -18.76 -0.29 -13.03 16 10 O -0.34 -8.45 9.25 -41.99 -0.39 -8.84 16 11 C 0.28 7.26 2.58 -29.03 -0.07 7.19 16 12 H 0.07 1.79 7.15 -51.93 -0.37 1.42 16 13 C -0.55 -15.16 8.91 -34.44 -0.31 -15.47 16 14 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 15 C 0.08 2.16 5.24 -17.82 -0.09 2.07 16 16 N -0.83 -22.75 10.62 55.43 0.59 -22.16 16 17 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 C 0.08 2.06 5.59 -35.62 -0.20 1.86 16 22 C -0.27 -5.94 10.81 -39.70 -0.43 -6.37 16 23 C -0.22 -4.40 10.91 -39.70 -0.43 -4.84 16 24 C -0.08 -1.69 12.09 29.42 0.36 -1.33 16 25 O -0.12 -2.89 8.87 2.21 0.02 -2.87 16 26 H 0.22 1.27 7.80 -54.09 -0.42 0.85 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.13 2.69 8.06 -52.49 -0.42 2.27 16 39 H 0.13 2.14 8.06 -52.49 -0.42 1.71 16 40 H 0.18 2.90 8.06 -52.49 -0.42 2.48 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -31.93 354.43 -7.13 -39.05 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.83 Total: 3.58 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -1.55 Total: -16.88 kcal Atomic # 7 Polarization: -22.75 SS G_CDS: 0.59 Total: -22.16 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.65 Total: -24.75 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.93 -7.13 -39.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526994087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.673 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds