Wall clock time and date at job start Tue Mar 31 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47532 * 280.23912 * 3 2 1 5 5 C 1.52996 * 109.47271 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46953 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.46952 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47298 * 180.02562 * 7 6 5 9 9 O 1.20833 * 119.99655 * 359.97438 * 8 7 6 10 10 O 1.34222 * 120.00432 * 180.27351 * 8 7 6 11 11 C 1.45201 * 117.00137 * 179.71953 * 10 8 7 12 12 H 1.08993 * 109.47491 * 330.00073 * 11 10 8 13 13 C 1.50706 * 109.46887 * 90.00045 * 11 10 8 14 14 H 1.08001 * 119.99914 * 239.99856 * 13 11 10 15 15 C 1.37878 * 119.99966 * 60.00384 * 13 11 10 16 16 N 1.31520 * 119.99989 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00079 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47012 * 59.99575 * 17 15 13 19 19 H 1.48497 * 109.47172 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47135 * 299.99921 * 17 15 13 21 21 C 1.50704 * 109.46907 * 209.99697 * 11 10 8 22 22 C 1.34516 * 125.78433 * 145.00355 * 21 11 10 23 23 C 1.41385 * 106.84086 * 179.97438 * 22 21 11 24 24 C 1.34521 * 106.83744 * 0.02562 * 23 22 21 25 25 O 1.34299 * 125.79250 * 324.69650 * 21 11 10 26 26 H 4.44648 * 5.63391 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.47225 * 160.24001 * 3 2 1 28 28 H 1.08998 * 109.47360 * 40.24219 * 3 2 1 29 29 H 1.09008 * 109.46645 * 60.00108 * 4 3 2 30 30 H 1.08998 * 109.47049 * 300.00498 * 4 3 2 31 31 H 1.09000 * 109.47439 * 60.00118 * 5 4 3 32 32 H 1.08998 * 109.47408 * 300.00176 * 5 4 3 33 33 H 1.08994 * 109.47101 * 60.00033 * 6 5 4 34 34 H 1.09006 * 109.46726 * 299.99825 * 6 5 4 35 35 H 1.09000 * 109.47764 * 59.99520 * 7 6 5 36 36 H 1.09006 * 109.46938 * 299.99298 * 7 6 5 37 37 H 0.97003 * 119.99499 * 180.02562 * 16 15 13 38 38 H 1.07996 * 126.58313 * 0.03006 * 22 21 11 39 39 H 1.07992 * 126.58013 * 179.97438 * 23 22 21 40 40 H 1.07996 * 125.78786 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1562 -0.2555 1.4195 5 6 4.6861 -0.2542 1.4195 6 6 5.1963 -0.5110 2.8390 7 6 6.7262 -0.5091 2.8392 8 6 7.2288 -0.7626 4.2370 9 8 6.4437 -0.9275 5.1406 10 8 8.5484 -0.7994 4.4795 11 6 8.9602 -1.0421 5.8506 12 1 8.2074 -0.6456 6.5317 13 6 9.1096 -2.5248 6.0752 14 1 8.5107 -3.0205 6.8249 15 6 10.0110 -3.2485 5.3236 16 7 10.7400 -2.6450 4.4103 17 14 10.1967 -5.0862 5.6024 18 1 8.8971 -5.7590 5.3499 19 1 11.2220 -5.6266 4.6740 20 1 10.6182 -5.3341 7.0046 21 6 10.2792 -0.3598 6.1072 22 6 10.6572 0.2113 7.2650 23 6 11.9584 0.7259 7.0622 24 6 12.2974 0.4389 5.7924 25 8 11.2787 -0.2238 5.2206 26 1 -1.0499 0.0002 0.0002 27 1 3.0089 0.9680 -0.3474 28 1 3.0097 -0.7836 -0.6639 29 1 2.7932 -1.2229 1.7669 30 1 2.7924 0.5287 2.0834 31 1 5.0487 0.7133 1.0723 32 1 5.0502 -1.0382 0.7556 33 1 4.8338 -1.4786 3.1858 34 1 4.8322 0.2728 3.5033 35 1 7.0885 0.4588 2.4924 36 1 7.0906 -1.2927 2.1748 37 1 11.3738 -3.1543 3.8814 38 1 10.0784 0.2655 8.1751 39 1 12.5636 1.2496 7.7872 40 1 13.2323 0.6935 5.3154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526994087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:20 Heat of formation + Delta-G solvation = -56.507660 kcal Electronic energy + Delta-G solvation = -22179.452785 eV Core-core repulsion = 18733.439285 eV Total energy + Delta-G solvation = -3446.013500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.03665 -40.99820 -37.76299 -37.04144 -34.94054 -34.79156 -33.56353 -32.24975 -31.54875 -28.67312 -28.14778 -25.34095 -23.99811 -22.36799 -21.94686 -21.25835 -21.08804 -19.00307 -18.84593 -18.24534 -17.94644 -17.23587 -16.87567 -16.61197 -16.24871 -16.22336 -15.22169 -15.07797 -14.79141 -14.47890 -14.42588 -13.60781 -13.57251 -13.37336 -13.32040 -13.05974 -12.91659 -12.89744 -12.81740 -12.38617 -12.22273 -12.08463 -11.94532 -11.81833 -11.42054 -11.27277 -11.02769 -10.94503 -10.94315 -10.77223 -10.49243 -9.07754 -8.22263 -6.53082 1.19242 1.37010 1.39316 1.46250 1.58063 1.89355 1.92779 1.94567 2.29408 2.33276 2.59711 3.08391 3.53059 3.88553 3.98418 4.03572 4.21184 4.30324 4.34844 4.40583 4.49164 4.55119 4.60581 4.73516 4.75543 4.85663 4.95312 4.99760 5.08791 5.13890 5.23783 5.25707 5.28611 5.43871 5.44443 5.52148 5.56966 5.80141 5.90244 6.04806 6.51194 6.72153 6.73997 7.15618 7.28171 8.75339 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.003267 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.671260 B = 8568.937787 C = 9482.391325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.216 4.216 3 C -0.014 4.014 4 C -0.110 4.110 5 C -0.109 4.109 6 C -0.101 4.101 7 C -0.105 4.105 8 C 0.443 3.557 9 O -0.562 6.562 10 O -0.352 6.352 11 C 0.278 3.722 12 H 0.055 0.945 13 C -0.579 4.579 14 H 0.058 0.942 15 C 0.042 3.958 16 N -0.845 5.845 17 Si 0.956 3.044 18 H -0.272 1.272 19 H -0.271 1.271 20 H -0.271 1.271 21 C 0.042 3.958 22 C -0.267 4.267 23 C -0.219 4.219 24 C -0.082 4.082 25 O -0.145 6.145 26 H 0.240 0.760 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.269 0.731 38 H 0.144 0.856 39 H 0.170 0.830 40 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 6.515 -8.496 12.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.216 4.216 3 C -0.050 4.050 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.139 4.139 7 C -0.143 4.143 8 C 0.289 3.711 9 O -0.455 6.455 10 O -0.267 6.267 11 C 0.225 3.775 12 H 0.073 0.927 13 C -0.615 4.615 14 H 0.076 0.924 15 C -0.166 4.166 16 N -0.478 5.478 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.011 4.011 22 C -0.287 4.287 23 C -0.238 4.238 24 C -0.150 4.150 25 O -0.038 6.038 26 H 0.257 0.743 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.162 0.838 39 H 0.188 0.812 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -7.355 6.356 -8.664 13.021 hybrid contribution -0.022 -1.087 0.916 1.422 sum -7.377 5.269 -7.748 11.925 Atomic orbital electron populations 1.25695 0.97035 1.00893 1.00219 1.23877 0.95816 1.00838 1.01081 1.18856 0.83762 1.04377 0.98040 1.21471 0.95443 1.01994 0.95898 1.21541 0.94503 1.03720 0.94873 1.21357 0.91633 1.02230 0.98641 1.21492 0.97523 1.06158 0.89081 1.24540 0.81221 0.71945 0.93381 1.90511 1.57650 1.48568 1.48793 1.86697 1.24660 1.79867 1.35498 1.18578 0.85829 0.94230 0.78864 0.92710 1.21350 1.24738 0.92387 1.23034 0.92380 1.25796 0.93836 1.03060 0.93956 1.70153 1.20983 1.37160 1.19469 0.85653 0.78244 0.79514 0.78551 1.19729 1.19569 1.19587 1.22744 0.90902 0.97981 0.89487 1.21559 0.99567 1.08646 0.98903 1.21903 0.96657 1.07401 0.97847 1.24737 0.94645 1.00494 0.95087 1.84350 1.22111 1.57437 1.39860 0.74306 0.88131 0.88439 0.92525 0.92094 0.89692 0.90343 0.92942 0.92116 0.86081 0.87272 0.92149 0.83849 0.81236 0.75767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.86 19.25 74.32 1.43 -2.43 16 2 C -0.22 -4.22 13.34 31.13 0.42 -3.81 16 3 C -0.01 -0.22 5.70 28.79 0.16 -0.05 16 4 C -0.11 -1.99 5.17 30.59 0.16 -1.84 16 5 C -0.11 -1.97 5.21 30.59 0.16 -1.81 16 6 C -0.10 -2.68 4.50 30.59 0.14 -2.54 16 7 C -0.11 -3.25 5.81 29.85 0.17 -3.07 16 8 C 0.44 19.96 7.92 71.23 0.56 20.53 16 9 O -0.56 -28.07 15.20 21.94 0.33 -27.73 16 10 O -0.35 -18.26 9.25 -48.71 -0.45 -18.71 16 11 C 0.28 15.07 2.58 29.10 0.07 15.14 16 12 H 0.06 3.00 7.15 -2.39 -0.02 2.98 16 13 C -0.58 -33.14 8.91 25.60 0.23 -32.92 16 14 H 0.06 3.36 7.81 -2.91 -0.02 3.33 16 15 C 0.04 2.30 5.24 84.65 0.44 2.75 16 16 N -0.84 -46.82 10.62 21.45 0.23 -46.60 16 17 Si 0.96 43.08 29.54 68.60 2.03 45.10 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 C 0.04 2.12 5.59 24.83 0.14 2.26 16 22 C -0.27 -11.89 10.81 22.19 0.24 -11.65 16 23 C -0.22 -8.20 10.91 22.19 0.24 -7.96 16 24 C -0.08 -3.15 12.09 66.97 0.81 -2.34 16 25 O -0.14 -7.17 8.87 0.89 0.01 -7.16 16 26 H 0.24 2.40 7.80 -4.42 -0.03 2.36 16 27 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 34 H 0.06 1.70 8.10 -2.38 -0.02 1.68 16 35 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 37 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 38 H 0.14 5.84 8.06 -2.91 -0.02 5.82 16 39 H 0.17 4.88 8.06 -2.91 -0.02 4.86 16 40 H 0.23 6.34 8.06 -2.91 -0.02 6.32 16 Total: -1.00 -71.28 354.43 8.54 -62.74 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 1.01 Total: 22.10 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 5.38 Total: -29.74 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.23 Total: -46.60 kcal Atomic # 8 Polarization: -53.50 SS G_CDS: -0.11 Total: -53.60 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -71.28 8.54 -62.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526994087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.232 kcal (2) G-P(sol) polarization free energy of solvation -71.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds