Wall clock time and date at job start Tue Mar 31 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47154 * 61.36761 * 3 2 1 5 5 C 1.53000 * 109.46999 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46999 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46999 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46955 * 180.02562 * 7 6 5 9 9 O 1.20826 * 120.00043 * 0.02562 * 8 7 6 10 10 O 1.34228 * 119.99607 * 179.97438 * 8 7 6 11 11 C 1.45200 * 116.99555 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47626 * 330.00711 * 11 10 8 13 13 C 1.50706 * 109.47265 * 210.00259 * 11 10 8 14 14 H 1.07999 * 119.99834 * 273.48900 * 13 11 10 15 15 C 1.37882 * 119.99906 * 93.48751 * 13 11 10 16 16 N 1.31506 * 119.99733 * 181.27738 * 15 13 11 17 17 Si 1.86802 * 119.99805 * 1.27587 * 15 13 11 18 18 H 1.48497 * 109.46799 * 84.88762 * 17 15 13 19 19 H 1.48501 * 109.46593 * 204.88379 * 17 15 13 20 20 H 1.48497 * 109.47333 * 324.88523 * 17 15 13 21 21 C 1.50698 * 109.46934 * 90.00648 * 11 10 8 22 22 C 1.34523 * 125.78904 * 216.36234 * 21 11 10 23 23 C 1.41377 * 106.83984 * 179.88523 * 22 21 11 24 24 C 1.34520 * 106.84545 * 0.37477 * 23 22 21 25 25 O 1.34298 * 125.79474 * 36.67030 * 21 11 10 26 26 H 4.44646 * 5.63369 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.47164 * 301.37172 * 3 2 1 28 28 H 1.08998 * 109.47694 * 181.36847 * 3 2 1 29 29 H 1.08992 * 109.46959 * 60.00232 * 4 3 2 30 30 H 1.09002 * 109.46860 * 300.00063 * 4 3 2 31 31 H 1.09001 * 109.47303 * 60.00420 * 5 4 3 32 32 H 1.09004 * 109.47050 * 300.00194 * 5 4 3 33 33 H 1.09001 * 109.46750 * 60.00082 * 6 5 4 34 34 H 1.09002 * 109.46860 * 299.99988 * 6 5 4 35 35 H 1.09005 * 109.47002 * 60.00026 * 7 6 5 36 36 H 1.09004 * 109.47050 * 300.00194 * 7 6 5 37 37 H 0.97002 * 120.00106 * 179.97438 * 16 15 13 38 38 H 1.07995 * 126.57450 * 0.02657 * 22 21 11 39 39 H 1.08003 * 126.57708 * 180.16251 * 23 22 21 40 40 H 1.07998 * 125.79192 * 179.74364 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.6904 -1.2661 5 6 4.6863 -0.6902 -1.2658 6 6 5.1967 -1.3818 -2.5316 7 6 6.7267 -1.3811 -2.5316 8 6 7.2293 -2.0617 -3.7787 9 8 6.4443 -2.5017 -4.5849 10 8 8.5490 -2.1782 -3.9941 11 6 8.9610 -2.8458 -5.2160 12 1 8.2112 -3.5854 -5.4966 13 6 10.2841 -3.5317 -4.9921 14 1 11.2056 -2.9856 -5.1299 15 6 10.3181 -4.8565 -4.6113 16 7 11.4718 -5.4481 -4.3915 17 14 8.7252 -5.8108 -4.4076 18 1 8.2967 -6.3456 -5.7250 19 1 8.9399 -6.9361 -3.4626 20 1 7.6730 -4.9095 -3.8731 21 6 9.1024 -1.8300 -6.3201 22 6 8.7911 -2.0261 -7.6141 23 6 9.0761 -0.8184 -8.2915 24 6 9.5523 0.0410 -7.3726 25 8 9.5660 -0.5773 -6.1805 26 1 -1.0499 0.0001 -0.0003 27 1 3.0096 -0.5342 0.8774 28 1 3.0090 1.0281 0.0245 29 1 2.7928 -0.1556 -2.1435 30 1 2.7934 -1.7179 -1.2906 31 1 5.0495 -1.2253 -0.3884 32 1 5.0496 0.3372 -1.2410 33 1 4.8334 -0.8471 -3.4093 34 1 4.8334 -2.4092 -2.5559 35 1 7.0902 -1.9155 -1.6538 36 1 7.0895 -0.3535 -2.5075 37 1 11.4958 -6.3799 -4.1233 38 1 8.3969 -2.9316 -8.0510 39 1 8.9409 -0.6242 -9.3453 40 1 9.8701 1.0557 -7.5617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526994088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:23 Heat of formation + Delta-G solvation = -46.188657 kcal Electronic energy + Delta-G solvation = -22153.003654 eV Core-core repulsion = 18707.437619 eV Total energy + Delta-G solvation = -3445.566035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.83216 -39.55073 -36.79741 -35.72328 -33.96052 -33.14264 -32.28933 -31.37343 -30.45468 -27.69245 -26.97018 -23.69593 -22.60792 -21.26407 -21.04849 -20.13170 -19.39638 -18.25988 -17.49540 -17.07008 -16.58969 -16.18104 -15.59824 -15.28865 -15.10143 -14.59251 -14.39966 -14.00185 -13.76746 -13.40825 -12.91479 -12.56730 -12.30745 -12.17176 -12.11542 -12.00190 -11.75366 -11.45963 -11.35806 -11.17527 -11.10033 -11.00195 -10.58700 -10.34678 -10.31610 -10.19057 -9.79750 -9.76068 -9.59633 -9.24852 -8.98724 -7.74210 -6.51267 -4.60543 2.43571 2.58022 2.61139 2.97149 3.07208 3.18683 3.24997 3.28592 3.61046 3.78466 4.09702 4.12689 4.77113 4.77460 4.88955 4.97895 5.14768 5.24011 5.34153 5.47485 5.49704 5.54586 5.62971 5.69181 5.70278 5.78448 5.84799 5.88666 6.02277 6.06552 6.21174 6.25208 6.37352 6.44062 6.56785 6.74942 7.07141 7.13999 7.38839 7.47994 7.88606 8.05840 8.59587 8.68080 9.05297 10.57508 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.003680 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.605675 B = 7606.305078 C = 8872.074373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.183 4.183 3 C -0.016 4.016 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.108 4.108 7 C -0.120 4.120 8 C 0.446 3.554 9 O -0.529 6.529 10 O -0.354 6.354 11 C 0.253 3.747 12 H 0.079 0.921 13 C -0.506 4.506 14 H 0.089 0.911 15 C 0.091 3.909 16 N -0.858 5.858 17 Si 0.872 3.128 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.258 1.258 21 C 0.032 3.968 22 C -0.229 4.229 23 C -0.210 4.210 24 C -0.072 4.072 25 O -0.168 6.168 26 H 0.215 0.785 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.276 0.724 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.354 9.863 5.039 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.183 4.183 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.158 4.158 8 C 0.289 3.711 9 O -0.420 6.420 10 O -0.271 6.271 11 C 0.202 3.798 12 H 0.096 0.904 13 C -0.542 4.542 14 H 0.107 0.893 15 C -0.118 4.118 16 N -0.492 5.492 17 Si 0.696 3.304 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.183 1.183 21 C -0.019 4.019 22 C -0.248 4.248 23 C -0.230 4.230 24 C -0.140 4.140 25 O -0.064 6.064 26 H 0.232 0.768 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -13.315 9.669 5.091 17.225 hybrid contribution -0.911 -0.642 -0.317 1.159 sum -14.226 9.026 4.774 17.512 Atomic orbital electron populations 1.24902 0.96007 1.01483 1.01202 1.23270 0.94730 1.00092 1.00183 1.18815 0.84487 1.02257 0.99648 1.21548 0.95662 1.01205 0.96820 1.21615 0.94544 1.01241 0.98291 1.21402 0.93102 1.02065 0.98024 1.21437 0.96613 1.02246 0.95510 1.23712 0.82960 0.76790 0.87589 1.90561 1.57426 1.46635 1.47377 1.87110 1.22836 1.71216 1.45900 1.19526 0.97240 0.85949 0.77102 0.90375 1.20799 0.90421 0.95207 1.47745 0.89262 1.25123 0.96902 0.97384 0.92379 1.69858 1.25095 1.12838 1.41428 0.86893 0.83564 0.80309 0.79585 1.19014 1.20178 1.18264 1.23319 0.97751 0.83335 0.97488 1.21371 1.10313 0.99929 0.93204 1.21674 1.06795 0.94350 1.00158 1.23830 1.07726 0.99222 0.83179 1.84069 1.65272 1.24147 1.32876 0.76779 0.89497 0.89510 0.91447 0.91442 0.91462 0.91487 0.91129 0.91123 0.88239 0.88300 0.91406 0.84045 0.84194 0.78979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.97 19.25 29.55 0.57 -1.40 16 2 C -0.18 -1.81 13.34 -37.12 -0.50 -2.31 16 3 C -0.02 -0.13 5.70 -29.52 -0.17 -0.29 16 4 C -0.11 -1.03 5.17 -26.73 -0.14 -1.17 16 5 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 6 C -0.11 -1.38 4.50 -26.73 -0.12 -1.50 16 7 C -0.12 -1.76 5.81 -27.88 -0.16 -1.93 16 8 C 0.45 9.32 7.85 36.01 0.28 9.60 16 9 O -0.53 -12.19 15.20 -18.75 -0.29 -12.47 16 10 O -0.35 -8.48 9.84 -41.81 -0.41 -8.89 16 11 C 0.25 6.43 1.96 -29.03 -0.06 6.37 16 12 H 0.08 2.02 4.56 -51.93 -0.24 1.78 16 13 C -0.51 -14.20 9.23 -34.44 -0.32 -14.52 16 14 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 15 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 16 N -0.86 -24.55 13.96 55.43 0.77 -23.78 16 17 Si 0.87 20.86 26.90 -169.99 -4.57 16.29 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.26 -6.26 6.91 56.52 0.39 -5.87 16 21 C 0.03 0.77 6.17 -35.62 -0.22 0.55 16 22 C -0.23 -4.88 10.81 -39.70 -0.43 -5.31 16 23 C -0.21 -3.78 10.91 -39.70 -0.43 -4.21 16 24 C -0.07 -1.27 12.09 29.42 0.36 -0.92 16 25 O -0.17 -3.71 10.64 2.92 0.03 -3.68 16 26 H 0.22 1.20 7.80 -54.10 -0.42 0.78 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 35 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.14 2.82 8.06 -52.49 -0.42 2.39 16 39 H 0.14 2.01 8.06 -52.48 -0.42 1.59 16 40 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -32.61 355.39 -6.40 -39.01 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.72 Total: 4.02 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -1.57 Total: -15.85 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.77 Total: -23.78 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.67 Total: -25.05 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.57 Total: 16.29 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.61 -6.40 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526994088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.180 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds