Wall clock time and date at job start Tue Mar 31 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47154 * 61.36761 * 3 2 1 5 5 C 1.53000 * 109.46999 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46999 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46999 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46955 * 180.02562 * 7 6 5 9 9 O 1.20826 * 120.00043 * 0.02562 * 8 7 6 10 10 O 1.34228 * 119.99607 * 179.97438 * 8 7 6 11 11 C 1.45200 * 116.99555 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47626 * 330.00711 * 11 10 8 13 13 C 1.50706 * 109.47265 * 210.00259 * 11 10 8 14 14 H 1.07999 * 119.99834 * 273.48900 * 13 11 10 15 15 C 1.37882 * 119.99906 * 93.48751 * 13 11 10 16 16 N 1.31506 * 119.99733 * 181.27738 * 15 13 11 17 17 Si 1.86802 * 119.99805 * 1.27587 * 15 13 11 18 18 H 1.48497 * 109.46799 * 84.88762 * 17 15 13 19 19 H 1.48501 * 109.46593 * 204.88379 * 17 15 13 20 20 H 1.48497 * 109.47333 * 324.88523 * 17 15 13 21 21 C 1.50698 * 109.46934 * 90.00648 * 11 10 8 22 22 C 1.34523 * 125.78904 * 216.36234 * 21 11 10 23 23 C 1.41377 * 106.83984 * 179.88523 * 22 21 11 24 24 C 1.34520 * 106.84545 * 0.37477 * 23 22 21 25 25 O 1.34298 * 125.79474 * 36.67030 * 21 11 10 26 26 H 4.44646 * 5.63369 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.47164 * 301.37172 * 3 2 1 28 28 H 1.08998 * 109.47694 * 181.36847 * 3 2 1 29 29 H 1.08992 * 109.46959 * 60.00232 * 4 3 2 30 30 H 1.09002 * 109.46860 * 300.00063 * 4 3 2 31 31 H 1.09001 * 109.47303 * 60.00420 * 5 4 3 32 32 H 1.09004 * 109.47050 * 300.00194 * 5 4 3 33 33 H 1.09001 * 109.46750 * 60.00082 * 6 5 4 34 34 H 1.09002 * 109.46860 * 299.99988 * 6 5 4 35 35 H 1.09005 * 109.47002 * 60.00026 * 7 6 5 36 36 H 1.09004 * 109.47050 * 300.00194 * 7 6 5 37 37 H 0.97002 * 120.00106 * 179.97438 * 16 15 13 38 38 H 1.07995 * 126.57450 * 0.02657 * 22 21 11 39 39 H 1.08003 * 126.57708 * 180.16251 * 23 22 21 40 40 H 1.07998 * 125.79192 * 179.74364 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.6904 -1.2661 5 6 4.6863 -0.6902 -1.2658 6 6 5.1967 -1.3818 -2.5316 7 6 6.7267 -1.3811 -2.5316 8 6 7.2293 -2.0617 -3.7787 9 8 6.4443 -2.5017 -4.5849 10 8 8.5490 -2.1782 -3.9941 11 6 8.9610 -2.8458 -5.2160 12 1 8.2112 -3.5854 -5.4966 13 6 10.2841 -3.5317 -4.9921 14 1 11.2056 -2.9856 -5.1299 15 6 10.3181 -4.8565 -4.6113 16 7 11.4718 -5.4481 -4.3915 17 14 8.7252 -5.8108 -4.4076 18 1 8.2967 -6.3456 -5.7250 19 1 8.9399 -6.9361 -3.4626 20 1 7.6730 -4.9095 -3.8731 21 6 9.1024 -1.8300 -6.3201 22 6 8.7911 -2.0261 -7.6141 23 6 9.0761 -0.8184 -8.2915 24 6 9.5523 0.0410 -7.3726 25 8 9.5660 -0.5773 -6.1805 26 1 -1.0499 0.0001 -0.0003 27 1 3.0096 -0.5342 0.8774 28 1 3.0090 1.0281 0.0245 29 1 2.7928 -0.1556 -2.1435 30 1 2.7934 -1.7179 -1.2906 31 1 5.0495 -1.2253 -0.3884 32 1 5.0496 0.3372 -1.2410 33 1 4.8334 -0.8471 -3.4093 34 1 4.8334 -2.4092 -2.5559 35 1 7.0902 -1.9155 -1.6538 36 1 7.0895 -0.3535 -2.5075 37 1 11.4958 -6.3799 -4.1233 38 1 8.3969 -2.9316 -8.0510 39 1 8.9409 -0.6242 -9.3453 40 1 9.8701 1.0557 -7.5617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526994088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:23 Heat of formation + Delta-G solvation = -64.004834 kcal Electronic energy + Delta-G solvation = -22153.776222 eV Core-core repulsion = 18707.437619 eV Total energy + Delta-G solvation = -3446.338602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.42828 -41.26274 -37.92149 -37.16785 -35.19744 -34.86016 -33.91574 -32.55647 -31.92313 -29.03321 -28.37305 -25.16285 -24.04924 -22.66302 -22.08187 -21.60267 -21.03235 -19.53571 -18.91738 -18.67682 -18.28857 -17.45516 -17.14444 -16.72741 -16.55604 -16.22769 -15.45411 -15.10079 -14.91160 -14.74040 -14.45163 -14.06645 -13.77941 -13.69868 -13.50445 -13.31156 -13.12141 -13.00017 -12.92817 -12.44512 -12.13575 -12.05786 -11.97632 -11.84748 -11.60616 -11.44453 -11.39978 -11.09275 -11.00297 -10.95658 -10.79876 -9.34877 -8.62472 -6.78022 0.84567 1.18445 1.22495 1.29793 1.37164 1.71111 1.87882 1.93201 1.99007 2.09531 2.24234 2.91778 3.51113 3.73532 3.90750 3.99348 4.04961 4.10995 4.19683 4.24241 4.26690 4.38803 4.53950 4.65018 4.69735 4.82080 4.89823 4.92006 4.96410 5.00857 5.04870 5.05316 5.20654 5.23932 5.24725 5.41418 5.48818 5.64193 5.73362 6.00344 6.29780 6.35242 6.72709 6.91010 6.95450 8.51392 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.003680 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.605675 B = 7606.305078 C = 8872.074373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.216 4.216 3 C -0.014 4.014 4 C -0.111 4.111 5 C -0.109 4.109 6 C -0.104 4.104 7 C -0.112 4.112 8 C 0.435 3.565 9 O -0.554 6.554 10 O -0.369 6.369 11 C 0.261 3.739 12 H 0.069 0.931 13 C -0.524 4.524 14 H 0.048 0.952 15 C 0.049 3.951 16 N -0.899 5.899 17 Si 0.931 3.069 18 H -0.255 1.255 19 H -0.258 1.258 20 H -0.267 1.267 21 C -0.018 4.018 22 C -0.232 4.232 23 C -0.216 4.216 24 C -0.057 4.057 25 O -0.190 6.190 26 H 0.240 0.760 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.283 0.717 38 H 0.146 0.854 39 H 0.181 0.819 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.037 11.425 5.326 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.216 4.216 3 C -0.050 4.050 4 C -0.149 4.149 5 C -0.147 4.147 6 C -0.141 4.141 7 C -0.149 4.149 8 C 0.281 3.719 9 O -0.446 6.446 10 O -0.286 6.286 11 C 0.209 3.791 12 H 0.086 0.914 13 C -0.560 4.560 14 H 0.066 0.934 15 C -0.156 4.156 16 N -0.535 5.535 17 Si 0.753 3.247 18 H -0.180 1.180 19 H -0.182 1.182 20 H -0.191 1.191 21 C -0.068 4.068 22 C -0.252 4.252 23 C -0.234 4.234 24 C -0.123 4.123 25 O -0.087 6.087 26 H 0.256 0.744 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.093 0.907 38 H 0.164 0.836 39 H 0.198 0.802 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -14.999 11.230 5.383 19.495 hybrid contribution -0.418 -0.962 -0.490 1.157 sum -15.417 10.269 4.893 19.159 Atomic orbital electron populations 1.25701 0.97053 1.00762 1.00367 1.23889 0.95836 1.00881 1.01025 1.18860 0.83713 1.03082 0.99375 1.21474 0.95517 1.00662 0.97205 1.21549 0.94456 1.01986 0.96678 1.21389 0.91603 1.01527 0.99617 1.21635 0.97690 1.03034 0.92544 1.24923 0.81432 0.76392 0.89177 1.90537 1.57507 1.47842 1.48761 1.86992 1.25090 1.71305 1.45193 1.19106 0.95316 0.86818 0.77866 0.91385 1.20791 0.90458 0.95818 1.48911 0.93403 1.25815 0.99922 0.98004 0.91853 1.69938 1.26967 1.13640 1.42982 0.85984 0.79295 0.79182 0.80270 1.17967 1.18194 1.19123 1.23080 1.01477 0.84444 0.97810 1.21756 1.09054 1.01480 0.92877 1.22109 1.06511 0.92672 1.02151 1.24957 1.05088 1.00824 0.81423 1.84025 1.65655 1.23774 1.35226 0.74356 0.88336 0.88159 0.92223 0.92466 0.90004 0.89681 0.92264 0.92705 0.86196 0.85686 0.90714 0.83590 0.80197 0.73759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.66 19.25 74.32 1.43 -2.23 16 2 C -0.22 -3.98 13.34 31.12 0.42 -3.57 16 3 C -0.01 -0.20 5.70 28.79 0.16 -0.03 16 4 C -0.11 -1.81 5.17 30.60 0.16 -1.66 16 5 C -0.11 -1.73 5.21 30.60 0.16 -1.57 16 6 C -0.10 -2.49 4.50 30.60 0.14 -2.35 16 7 C -0.11 -3.08 5.81 29.85 0.17 -2.91 16 8 C 0.43 18.17 7.85 71.24 0.56 18.73 16 9 O -0.55 -25.79 15.20 21.96 0.33 -25.46 16 10 O -0.37 -18.04 9.84 -48.95 -0.48 -18.52 16 11 C 0.26 13.69 1.96 29.10 0.06 13.75 16 12 H 0.07 3.63 4.56 -2.39 -0.01 3.62 16 13 C -0.52 -30.84 9.23 25.60 0.24 -30.61 16 14 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 15 C 0.05 2.81 5.47 84.66 0.46 3.28 16 16 N -0.90 -53.18 13.96 21.45 0.30 -52.88 16 17 Si 0.93 43.92 26.90 68.60 1.85 45.77 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.27 -12.80 6.91 99.48 0.69 -12.12 16 21 C -0.02 -0.84 6.17 24.83 0.15 -0.69 16 22 C -0.23 -9.85 10.81 22.19 0.24 -9.61 16 23 C -0.22 -7.21 10.91 22.19 0.24 -6.97 16 24 C -0.06 -1.85 12.09 66.97 0.81 -1.04 16 25 O -0.19 -8.37 10.64 0.24 0.00 -8.37 16 26 H 0.24 2.20 7.80 -4.42 -0.03 2.17 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 34 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 35 H 0.12 2.87 8.14 -2.38 -0.02 2.86 16 36 H 0.13 2.84 8.14 -2.38 -0.02 2.82 16 37 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.15 5.85 8.06 -2.91 -0.02 5.82 16 39 H 0.18 4.44 8.06 -2.91 -0.02 4.41 16 40 H 0.25 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -75.16 355.39 8.40 -66.76 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 1.00 Total: 20.17 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 5.40 Total: -27.47 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.30 Total: -52.88 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: -0.15 Total: -52.34 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.85 Total: 45.77 kcal Total: -75.16 8.40 -66.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526994088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.759 kcal (2) G-P(sol) polarization free energy of solvation -75.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds