Wall clock time and date at job start Tue Mar 31 2020 06:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.50699 * 115.56292 * 115.36560 * 3 2 1 5 5 O 1.21283 * 120.00165 * 145.76774 * 4 3 2 6 6 N 1.34772 * 120.00179 * 325.77496 * 4 3 2 7 7 C 1.47068 * 136.05922 * 359.62552 * 6 4 3 8 8 C 1.53752 * 87.89283 * 152.96334 * 7 6 4 9 9 O 1.42899 * 114.39771 * 272.67928 * 8 7 6 10 10 C 1.50695 * 114.08842 * 139.77586 * 8 7 6 11 11 H 1.07993 * 120.00452 * 266.56484 * 10 8 7 12 12 C 1.37885 * 119.99527 * 86.56371 * 10 8 7 13 13 N 1.31514 * 120.00016 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99595 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47195 * 60.00297 * 14 12 10 16 16 H 1.48503 * 109.46975 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47008 * 299.99990 * 14 12 10 18 18 C 1.47063 * 136.05927 * 179.97438 * 6 4 3 19 19 C 1.53180 * 117.52267 * 329.51241 * 3 2 1 20 20 C 1.52131 * 117.52215 * 261.13823 * 3 2 1 21 21 C 1.54087 * 121.43290 * 218.26267 * 20 3 2 22 22 C 1.55040 * 102.81754 * 180.69449 * 21 20 3 23 23 C 1.54548 * 104.23504 * 323.23371 * 22 21 20 24 24 C 1.53472 * 121.86171 * 356.22586 * 20 3 2 25 25 H 1.08997 * 113.46935 * 267.69887 * 7 6 4 26 26 H 1.09000 * 113.46767 * 38.13279 * 7 6 4 27 27 H 0.96696 * 114.00008 * 273.58687 * 9 8 7 28 28 H 0.97001 * 119.99254 * 180.02562 * 13 12 10 29 29 H 1.08998 * 113.46952 * 321.86427 * 18 6 4 30 30 H 1.09004 * 113.46984 * 92.24474 * 18 6 4 31 31 H 1.09002 * 117.52072 * 145.14929 * 19 3 2 32 32 H 1.08999 * 117.52126 * 0.02562 * 19 3 2 33 33 H 1.09002 * 110.77567 * 299.07794 * 21 20 3 34 34 H 1.08995 * 110.77625 * 62.31116 * 21 20 3 35 35 H 1.08996 * 110.46232 * 81.79505 * 22 21 20 36 36 H 1.09001 * 110.45849 * 204.36895 * 22 21 20 37 37 H 1.09002 * 109.85044 * 263.96856 * 23 22 21 38 38 H 1.08998 * 110.15944 * 142.61742 * 23 22 21 39 39 H 1.08995 * 110.07963 * 312.87108 * 24 20 3 40 40 H 1.09000 * 110.08073 * 74.38095 * 24 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2580 0.5833 -1.2284 5 8 4.3028 1.1915 -1.1311 6 7 2.6783 0.4287 -2.4352 7 6 1.4645 -0.2216 -2.9514 8 6 1.4769 0.7971 -4.1030 9 8 0.7985 2.0214 -3.8153 10 6 1.1158 0.2132 -5.4445 11 1 1.8928 -0.1364 -6.1081 12 6 -0.2067 0.1256 -5.8247 13 7 -1.1528 0.5519 -5.0168 14 14 -0.6543 -0.5988 -7.4874 15 1 -0.1650 -1.9987 -7.5654 16 1 -2.1298 -0.5796 -7.6546 17 1 -0.0241 0.2067 -8.5641 18 6 2.9843 0.8309 -3.8163 19 6 3.3164 -1.1697 0.6892 20 6 3.3109 0.2088 1.3330 21 6 4.5974 1.0501 1.4404 22 6 4.9418 0.9609 2.9494 23 6 3.5670 0.9843 3.6551 24 6 2.5317 0.4965 2.6235 25 1 1.6278 -1.2485 -3.2785 26 1 0.6037 -0.1212 -2.2904 27 1 -0.1510 1.9970 -3.9968 28 1 -2.0831 0.4898 -5.2843 29 1 3.4182 1.8279 -3.8921 30 1 3.5496 0.0821 -4.3714 31 1 4.2528 -1.5185 0.2538 32 1 2.6922 -1.9400 1.1421 33 1 5.3942 0.6171 0.8357 34 1 4.4095 2.0830 1.1472 35 1 5.4640 0.0291 3.1666 36 1 5.5445 1.8165 3.2539 37 1 3.3299 2.0005 3.9701 38 1 3.5764 0.3186 4.5181 39 1 1.7865 1.2718 2.4458 40 1 2.0476 -0.4131 2.9791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556250139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:26 Heat of formation + Delta-G solvation = 7.176463 kcal Electronic energy + Delta-G solvation = -23525.932941 eV Core-core repulsion = 20114.973743 eV Total energy + Delta-G solvation = -3410.959198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61850 -39.01666 -37.11052 -36.19786 -34.11494 -34.02392 -32.20691 -29.12691 -28.82105 -26.41268 -25.43743 -25.17440 -24.12806 -21.15613 -20.34142 -19.50347 -18.89454 -17.66578 -17.00801 -15.95217 -15.68698 -15.52293 -15.11591 -14.80111 -14.19692 -14.11629 -13.93961 -13.34433 -13.15787 -12.86231 -12.81340 -12.68225 -12.60478 -12.25053 -12.15968 -12.00472 -11.56605 -11.32796 -11.20002 -11.05695 -11.04213 -10.93069 -10.51643 -10.50322 -10.32402 -10.27812 -10.04559 -9.62463 -9.22113 -8.79471 -8.43114 -7.94060 -6.40648 -4.52176 2.42214 2.81508 3.05728 3.15395 3.21560 3.22727 3.32692 3.72080 3.87478 4.16510 4.36260 4.50228 4.71309 4.75113 4.80401 4.95368 5.02519 5.38158 5.41306 5.47573 5.52594 5.57845 5.62754 5.73716 5.80948 5.88603 5.90019 5.99177 6.09199 6.12897 6.32769 6.35002 6.40041 6.45497 6.53415 6.66319 7.06699 7.61475 7.69012 7.77328 8.33751 8.50834 8.58702 9.19177 9.46402 10.65978 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031847 B = 0.004157 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.001919 B = 6733.736845 C = 7116.651536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.240 3.760 3 C -0.065 4.065 4 C 0.580 3.420 5 O -0.543 6.543 6 N -0.626 5.626 7 C 0.062 3.938 8 C 0.242 3.758 9 O -0.571 6.571 10 C -0.537 4.537 11 H 0.073 0.927 12 C 0.072 3.928 13 N -0.896 5.896 14 Si 0.910 3.090 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.110 3.890 19 C -0.111 4.111 20 C -0.068 4.068 21 C -0.073 4.073 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.094 4.094 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.394 0.606 28 H 0.275 0.725 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.581 -3.453 12.732 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.078 4.078 3 C -0.072 4.072 4 C 0.366 3.634 5 O -0.422 6.422 6 N -0.358 5.358 7 C -0.061 4.061 8 C 0.200 3.800 9 O -0.384 6.384 10 C -0.575 4.575 11 H 0.092 0.908 12 C -0.131 4.131 13 N -0.536 5.536 14 Si 0.737 3.263 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.011 4.011 19 C -0.150 4.150 20 C -0.070 4.070 21 C -0.110 4.110 22 C -0.163 4.163 23 C -0.157 4.157 24 C -0.131 4.131 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.251 0.749 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.848 -2.874 13.157 15.587 hybrid contribution -0.771 -0.714 -1.107 1.526 sum 7.077 -3.588 12.050 14.428 Atomic orbital electron populations 1.81264 1.11519 1.07818 1.07326 1.27186 0.92838 0.94002 0.93768 1.18326 0.83195 1.09359 0.96289 1.18177 0.83567 0.80236 0.81385 1.90663 1.23158 1.43210 1.85174 1.49676 1.26756 1.53727 1.05616 1.24481 0.85074 0.99530 0.97046 1.19542 0.87229 0.82345 0.90881 1.86035 1.28677 1.34410 1.89257 1.21370 0.92941 1.41554 1.01637 0.90846 1.25101 0.96024 0.94054 0.97875 1.69265 1.01123 1.46571 1.36595 0.86354 0.77435 0.79648 0.82891 1.19834 1.20972 1.19757 1.23372 0.99598 0.99963 0.78208 1.23221 1.01632 0.90608 0.99537 1.21868 0.97840 0.98026 0.89254 1.21964 0.93961 1.00095 0.94986 1.22474 0.96585 1.01775 0.95499 1.22146 0.94734 1.01243 0.97564 1.21691 0.97588 1.01593 0.92262 0.89912 0.91410 0.74886 0.91436 0.91229 0.89326 0.86331 0.86967 0.90064 0.90043 0.91549 0.91418 0.91661 0.91677 0.90998 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -8.05 17.79 42.15 0.75 -7.30 16 2 C 0.24 4.30 12.02 -20.76 -0.25 4.05 16 3 C -0.06 -1.02 2.47 -158.80 -0.39 -1.42 16 4 C 0.58 11.16 7.62 -10.99 -0.08 11.07 16 5 O -0.54 -10.99 14.62 5.55 0.08 -10.91 16 6 N -0.63 -13.11 3.64 -185.08 -0.67 -13.78 16 7 C 0.06 1.38 7.19 -8.39 -0.06 1.32 16 8 C 0.24 5.89 1.59 -91.13 -0.14 5.75 16 9 O -0.57 -15.18 13.55 -35.23 -0.48 -15.66 16 10 C -0.54 -13.50 8.69 -34.44 -0.30 -13.79 16 11 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 12 C 0.07 1.83 5.40 -17.82 -0.10 1.73 16 13 N -0.90 -23.40 11.01 55.43 0.61 -22.79 16 14 Si 0.91 19.55 29.54 -169.99 -5.02 14.53 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 C 0.11 2.36 8.02 -8.53 -0.07 2.29 16 19 C -0.11 -1.28 9.67 -27.08 -0.26 -1.54 16 20 C -0.07 -0.84 2.24 -154.58 -0.35 -1.19 16 21 C -0.07 -0.88 4.77 -25.09 -0.12 -1.00 16 22 C -0.13 -1.14 6.86 -24.84 -0.17 -1.31 16 23 C -0.12 -1.05 6.82 -25.36 -0.17 -1.23 16 24 C -0.09 -1.01 5.90 -25.93 -0.15 -1.17 16 25 H 0.08 1.74 8.10 -51.93 -0.42 1.32 16 26 H 0.07 1.60 5.79 -51.93 -0.30 1.30 16 27 H 0.39 10.75 6.33 45.56 0.29 11.03 16 28 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 31 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.04 7.41 -51.93 -0.38 0.65 16 34 H 0.08 1.13 7.83 -51.93 -0.41 0.73 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 LS Contribution 333.57 15.07 5.03 5.03 Total: -1.00 -28.65 333.57 -7.31 -35.96 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -4.99 Total: 11.35 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -2.62 Total: 3.57 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.69 Total: -43.87 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.40 Total: -26.57 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.65 -7.31 -35.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556250139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.141 kcal (2) G-P(sol) polarization free energy of solvation -28.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds