Wall clock time and date at job start Tue Mar 31 2020 06:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.50699 * 115.56292 * 115.36560 * 3 2 1 5 5 O 1.21283 * 120.00165 * 145.76774 * 4 3 2 6 6 N 1.34772 * 120.00179 * 325.77496 * 4 3 2 7 7 C 1.47068 * 136.05922 * 359.62552 * 6 4 3 8 8 C 1.53752 * 87.89283 * 152.96334 * 7 6 4 9 9 O 1.42899 * 114.39771 * 272.67928 * 8 7 6 10 10 C 1.50695 * 114.08842 * 139.77586 * 8 7 6 11 11 H 1.07993 * 120.00452 * 266.56484 * 10 8 7 12 12 C 1.37885 * 119.99527 * 86.56371 * 10 8 7 13 13 N 1.31514 * 120.00016 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99595 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47195 * 60.00297 * 14 12 10 16 16 H 1.48503 * 109.46975 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47008 * 299.99990 * 14 12 10 18 18 C 1.47063 * 136.05927 * 179.97438 * 6 4 3 19 19 C 1.53180 * 117.52267 * 329.51241 * 3 2 1 20 20 C 1.52131 * 117.52215 * 261.13823 * 3 2 1 21 21 C 1.54087 * 121.43290 * 218.26267 * 20 3 2 22 22 C 1.55040 * 102.81754 * 180.69449 * 21 20 3 23 23 C 1.54548 * 104.23504 * 323.23371 * 22 21 20 24 24 C 1.53472 * 121.86171 * 356.22586 * 20 3 2 25 25 H 1.08997 * 113.46935 * 267.69887 * 7 6 4 26 26 H 1.09000 * 113.46767 * 38.13279 * 7 6 4 27 27 H 0.96696 * 114.00008 * 273.58687 * 9 8 7 28 28 H 0.97001 * 119.99254 * 180.02562 * 13 12 10 29 29 H 1.08998 * 113.46952 * 321.86427 * 18 6 4 30 30 H 1.09004 * 113.46984 * 92.24474 * 18 6 4 31 31 H 1.09002 * 117.52072 * 145.14929 * 19 3 2 32 32 H 1.08999 * 117.52126 * 0.02562 * 19 3 2 33 33 H 1.09002 * 110.77567 * 299.07794 * 21 20 3 34 34 H 1.08995 * 110.77625 * 62.31116 * 21 20 3 35 35 H 1.08996 * 110.46232 * 81.79505 * 22 21 20 36 36 H 1.09001 * 110.45849 * 204.36895 * 22 21 20 37 37 H 1.09002 * 109.85044 * 263.96856 * 23 22 21 38 38 H 1.08998 * 110.15944 * 142.61742 * 23 22 21 39 39 H 1.08995 * 110.07963 * 312.87108 * 24 20 3 40 40 H 1.09000 * 110.08073 * 74.38095 * 24 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2580 0.5833 -1.2284 5 8 4.3028 1.1915 -1.1311 6 7 2.6783 0.4287 -2.4352 7 6 1.4645 -0.2216 -2.9514 8 6 1.4769 0.7971 -4.1030 9 8 0.7985 2.0214 -3.8153 10 6 1.1158 0.2132 -5.4445 11 1 1.8928 -0.1364 -6.1081 12 6 -0.2067 0.1256 -5.8247 13 7 -1.1528 0.5519 -5.0168 14 14 -0.6543 -0.5988 -7.4874 15 1 -0.1650 -1.9987 -7.5654 16 1 -2.1298 -0.5796 -7.6546 17 1 -0.0241 0.2067 -8.5641 18 6 2.9843 0.8309 -3.8163 19 6 3.3164 -1.1697 0.6892 20 6 3.3109 0.2088 1.3330 21 6 4.5974 1.0501 1.4404 22 6 4.9418 0.9609 2.9494 23 6 3.5670 0.9843 3.6551 24 6 2.5317 0.4965 2.6235 25 1 1.6278 -1.2485 -3.2785 26 1 0.6037 -0.1212 -2.2904 27 1 -0.1510 1.9970 -3.9968 28 1 -2.0831 0.4898 -5.2843 29 1 3.4182 1.8279 -3.8921 30 1 3.5496 0.0821 -4.3714 31 1 4.2528 -1.5185 0.2538 32 1 2.6922 -1.9400 1.1421 33 1 5.3942 0.6171 0.8357 34 1 4.4095 2.0830 1.1472 35 1 5.4640 0.0291 3.1666 36 1 5.5445 1.8165 3.2539 37 1 3.3299 2.0005 3.9701 38 1 3.5764 0.3186 4.5181 39 1 1.7865 1.2718 2.4458 40 1 2.0476 -0.4131 2.9791 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556250139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:25 Heat of formation + Delta-G solvation = -11.057530 kcal Electronic energy + Delta-G solvation = -23526.723627 eV Core-core repulsion = 20114.973743 eV Total energy + Delta-G solvation = -3411.749884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.95455 -40.52194 -38.61608 -37.54975 -35.94226 -35.14992 -34.18157 -30.80177 -29.67881 -27.91015 -26.94742 -26.61786 -25.44625 -22.53661 -21.56843 -20.55983 -20.36981 -19.47939 -18.56222 -17.42410 -17.10709 -16.89903 -16.44729 -16.30141 -15.97984 -15.38209 -15.22831 -14.74248 -14.70763 -14.36552 -14.20826 -14.04322 -13.84986 -13.71414 -13.48030 -13.44601 -13.22505 -12.80141 -12.77055 -12.26611 -12.22152 -12.08388 -12.05070 -11.86157 -11.46149 -11.31949 -11.25016 -11.15320 -10.84613 -10.64083 -10.27638 -9.66436 -8.31137 -6.49867 1.12502 1.40250 1.46015 1.47635 1.55814 1.57448 1.83469 2.37199 2.48102 2.72529 2.89843 3.11401 3.43350 3.62336 3.67405 3.80776 3.86563 4.08042 4.28353 4.38668 4.53470 4.57871 4.58254 4.60421 4.67508 4.71275 4.79439 4.83530 4.86963 4.94744 4.99539 5.15487 5.16118 5.23308 5.35691 5.44367 5.55950 5.67685 5.84478 6.29738 6.57184 6.72655 7.00172 7.24479 7.38796 8.74678 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031847 B = 0.004157 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.001919 B = 6733.736845 C = 7116.651536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.257 3.743 3 C -0.099 4.099 4 C 0.577 3.423 5 O -0.555 6.555 6 N -0.632 5.632 7 C 0.077 3.923 8 C 0.215 3.785 9 O -0.587 6.587 10 C -0.552 4.552 11 H 0.082 0.918 12 C 0.028 3.972 13 N -0.922 5.922 14 Si 0.974 3.026 15 H -0.264 1.264 16 H -0.286 1.286 17 H -0.270 1.270 18 C 0.115 3.885 19 C -0.079 4.079 20 C -0.059 4.059 21 C -0.076 4.076 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.096 4.096 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.387 0.613 28 H 0.275 0.725 29 H 0.060 0.940 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.047 -5.211 13.818 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.059 4.059 3 C -0.106 4.106 4 C 0.366 3.634 5 O -0.435 6.435 6 N -0.365 5.365 7 C -0.047 4.047 8 C 0.174 3.826 9 O -0.400 6.400 10 C -0.590 4.590 11 H 0.100 0.900 12 C -0.172 4.172 13 N -0.563 5.563 14 Si 0.799 3.201 15 H -0.188 1.188 16 H -0.212 1.212 17 H -0.195 1.195 18 C -0.007 4.007 19 C -0.117 4.117 20 C -0.062 4.062 21 C -0.113 4.113 22 C -0.154 4.154 23 C -0.152 4.152 24 C -0.133 4.133 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.243 0.757 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.344 -4.632 14.264 17.669 hybrid contribution -1.158 -0.093 -1.422 1.836 sum 8.186 -4.725 12.842 15.945 Atomic orbital electron populations 1.81264 1.12851 1.09668 1.08709 1.27563 0.93253 0.92610 0.92523 1.18443 0.81908 1.13856 0.96411 1.18713 0.83469 0.79617 0.81638 1.90656 1.23892 1.43537 1.85414 1.49697 1.26483 1.54190 1.06104 1.24192 0.85053 0.99534 0.95885 1.19913 0.88851 0.82175 0.91655 1.86017 1.28292 1.36192 1.89508 1.21677 0.93477 1.41605 1.02238 0.89973 1.25881 0.95920 0.94351 1.01073 1.69361 1.01310 1.47501 1.38161 0.85347 0.76833 0.79215 0.78722 1.18824 1.21177 1.19470 1.23335 0.97810 1.00369 0.79146 1.23523 1.01576 0.90019 0.96614 1.22130 0.97371 0.98812 0.87841 1.21946 0.93581 0.98405 0.97405 1.22448 0.97018 1.03212 0.92708 1.22152 0.93665 1.01858 0.97552 1.21762 0.97712 1.01837 0.92003 0.88757 0.93232 0.75728 0.91509 0.92118 0.86871 0.84655 0.84253 0.90795 0.92649 0.89654 0.90544 0.91595 0.89380 0.92933 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -18.25 17.79 20.01 0.36 -17.89 16 2 C 0.26 9.24 12.02 89.44 1.07 10.32 16 3 C -0.10 -3.03 2.47 -54.96 -0.14 -3.17 16 4 C 0.58 22.02 7.62 87.66 0.67 22.69 16 5 O -0.56 -22.35 14.62 -3.04 -0.04 -22.39 16 6 N -0.63 -26.47 3.64 -858.35 -3.13 -29.60 16 7 C 0.08 3.45 7.19 83.26 0.60 4.05 16 8 C 0.22 10.63 1.59 -11.13 -0.02 10.62 16 9 O -0.59 -32.34 13.55 -148.98 -2.02 -34.36 16 10 C -0.55 -27.75 8.69 25.60 0.22 -27.52 16 11 H 0.08 3.87 7.81 -2.91 -0.02 3.85 16 12 C 0.03 1.40 5.40 84.66 0.46 1.86 16 13 N -0.92 -49.09 11.01 21.45 0.24 -48.85 16 14 Si 0.97 39.84 29.54 68.60 2.03 41.87 16 15 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 16 H -0.29 -11.69 7.11 99.48 0.71 -10.99 16 17 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 18 C 0.12 4.93 8.02 83.17 0.67 5.60 16 19 C -0.08 -1.57 9.67 30.37 0.29 -1.28 16 20 C -0.06 -1.37 2.24 -52.23 -0.12 -1.48 16 21 C -0.08 -1.73 4.77 31.66 0.15 -1.57 16 22 C -0.12 -1.76 6.86 31.82 0.22 -1.54 16 23 C -0.11 -1.68 6.82 31.48 0.21 -1.46 16 24 C -0.10 -1.87 5.90 31.11 0.18 -1.68 16 25 H 0.09 3.94 8.10 -2.39 -0.02 3.92 16 26 H 0.05 2.40 5.79 -2.39 -0.01 2.38 16 27 H 0.39 22.01 6.33 -74.06 -0.47 21.54 16 28 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 29 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.11 4.21 8.10 -2.38 -0.02 4.19 16 31 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.07 1.78 7.41 -2.39 -0.02 1.76 16 34 H 0.05 1.54 7.83 -2.39 -0.02 1.52 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.05 1.23 8.08 -2.39 -0.02 1.22 16 40 H 0.08 1.40 8.11 -2.39 -0.02 1.38 16 Total: -1.00 -63.21 333.57 2.50 -60.71 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: 0.60 Total: 35.10 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 4.48 Total: 15.41 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -2.54 Total: -96.34 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: -2.06 Total: -56.75 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -63.21 2.50 -60.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556250139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.654 kcal (2) G-P(sol) polarization free energy of solvation -63.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds