Wall clock time and date at job start Tue Mar 31 2020 06:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47220 * 2 1 4 4 C 1.34824 * 126.59058 * 125.31565 * 3 2 1 5 5 C 1.36610 * 106.83452 * 180.12950 * 4 3 2 6 6 C 1.47498 * 125.77237 * 179.83976 * 5 4 3 7 7 O 1.21604 * 120.00032 * 359.72084 * 6 5 4 8 8 N 1.34779 * 120.00114 * 179.71782 * 6 5 4 9 9 C 1.40104 * 120.00304 * 180.02562 * 8 6 5 10 10 C 1.40421 * 125.97199 * 359.97438 * 9 8 6 11 11 C 1.35232 * 107.86634 * 179.71480 * 10 9 8 12 12 N 1.34966 * 107.86400 * 0.42961 * 11 10 9 13 13 C 1.46500 * 125.97782 * 179.83405 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71059 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 N 1.31226 * 125.97848 * 179.97438 * 9 8 6 23 23 N 1.34405 * 108.45741 * 359.58118 * 5 4 3 24 24 N 1.28763 * 109.52473 * 0.26196 * 23 5 4 25 25 H 1.09000 * 109.47315 * 59.99164 * 1 2 3 26 26 H 1.08994 * 109.47495 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46859 * 299.99698 * 1 2 3 28 28 H 1.09002 * 109.46391 * 240.00541 * 2 1 3 29 29 H 1.08992 * 109.47092 * 120.00258 * 2 1 3 30 30 H 1.07997 * 126.58333 * 359.97438 * 4 3 2 31 31 H 0.96998 * 119.99902 * 0.02562 * 8 6 5 32 32 H 1.08004 * 126.06605 * 359.97438 * 10 9 8 33 33 H 1.08006 * 126.07172 * 180.29130 * 11 10 9 34 34 H 1.09004 * 109.47078 * 4.71821 * 13 12 11 35 35 H 1.08993 * 109.47364 * 244.71592 * 13 12 11 36 36 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8763 1.9303 0.8833 5 6 3.0509 3.2323 0.5082 6 6 3.9078 4.2190 1.1920 7 8 4.5320 3.8978 2.1850 8 7 3.9991 5.4768 0.7163 9 6 4.8135 6.4139 1.3654 10 6 5.5851 6.1801 2.5151 11 6 6.2292 7.3287 2.8232 12 7 5.8745 8.2593 1.9123 13 6 6.3393 9.6481 1.8750 14 6 6.9478 9.9383 0.5271 15 1 6.9841 9.1656 -0.2265 16 6 7.4580 11.1901 0.2561 17 7 7.4089 12.1326 1.1720 18 14 8.2115 11.5500 -1.4149 19 1 8.6774 12.9595 -1.4547 20 1 9.3634 10.6412 -1.6445 21 1 7.1928 11.3352 -2.4738 22 7 4.9886 7.6636 1.0054 23 7 2.3142 3.4604 -0.5926 24 7 1.6885 2.3845 -0.9223 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.3352 1.4365 1.7270 31 1 3.5010 5.7331 -0.0756 32 1 5.6553 5.2473 3.0549 33 1 6.9054 7.4758 3.6523 34 1 7.0881 9.8016 2.6522 35 1 5.4966 10.3181 2.0451 36 1 7.0174 11.9459 2.0396 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586591863.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:54 Heat of formation + Delta-G solvation = 143.294485 kcal Electronic energy + Delta-G solvation = -21509.978163 eV Core-core repulsion = 18033.673893 eV Total energy + Delta-G solvation = -3476.304270 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.50010 -40.66796 -39.06660 -35.83924 -34.85055 -33.63549 -31.72495 -31.22249 -30.29206 -29.36385 -26.39572 -25.08415 -24.30947 -22.84312 -22.12710 -21.36675 -20.40188 -19.55670 -18.11443 -17.16276 -16.79620 -16.50545 -16.30541 -15.42752 -15.19027 -14.89211 -14.81631 -14.21403 -13.98216 -13.75420 -13.39813 -13.13417 -12.91800 -12.54171 -12.41417 -12.22174 -12.07550 -11.80654 -11.48482 -11.13672 -10.78946 -10.72231 -10.46185 -10.15692 -10.13095 -9.75171 -9.58302 -8.97139 -8.55239 -8.18709 -7.50913 -6.55327 -4.29142 0.83094 1.43973 1.65507 2.64416 2.72753 3.07208 3.40704 3.43099 3.61147 3.69168 3.75931 3.87136 3.99899 4.24257 4.42917 4.45161 4.51734 4.66338 4.86419 4.95085 5.16997 5.18542 5.37111 5.48403 5.58471 5.74751 6.00441 6.19088 6.41287 6.52100 6.59696 6.77597 7.33523 7.44349 7.65429 7.75932 7.85317 8.16554 8.37420 8.56370 8.64887 9.38886 10.82300 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.031830 B = 0.002788 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.468276 B =10041.679425 C =10651.406889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.362 5.362 4 C 0.097 3.903 5 C -0.096 4.096 6 C 0.613 3.387 7 O -0.517 6.517 8 N -0.615 5.615 9 C 0.259 3.741 10 C -0.284 4.284 11 C 0.051 3.949 12 N -0.317 5.317 13 C 0.249 3.751 14 C -0.607 4.607 15 H 0.064 0.936 16 C 0.023 3.977 17 N -0.905 5.905 18 Si 1.077 2.923 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.285 1.285 22 N -0.297 5.297 23 N -0.202 5.202 24 N -0.061 5.061 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.207 0.793 31 H 0.419 0.581 32 H 0.162 0.838 33 H 0.169 0.831 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 -25.514 1.112 27.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.148 5.148 4 C -0.060 4.060 5 C -0.236 4.236 6 C 0.397 3.603 7 O -0.391 6.391 8 N -0.261 5.261 9 C 0.006 3.994 10 C -0.315 4.315 11 C -0.099 4.099 12 N -0.098 5.098 13 C 0.131 3.869 14 C -0.646 4.646 15 H 0.082 0.918 16 C -0.182 4.182 17 N -0.541 5.541 18 Si 0.904 3.096 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.211 1.211 22 N -0.128 5.128 23 N -0.076 5.076 24 N -0.041 5.041 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.224 0.776 31 H 0.256 0.744 32 H 0.180 0.820 33 H 0.186 0.814 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.138 -23.227 -1.168 25.786 hybrid contribution -0.249 -2.090 1.978 2.889 sum -11.388 -25.317 0.810 27.772 Atomic orbital electron populations 1.22094 0.92661 1.03741 1.04153 1.22058 0.96942 0.76072 1.05226 1.50641 1.31502 1.12447 1.20170 1.23370 0.92829 0.93803 0.95951 1.21253 1.07977 0.94877 0.99467 1.16571 0.80311 0.80354 0.83101 1.90747 1.44842 1.78569 1.24925 1.42141 1.45016 1.08500 1.30441 1.19042 0.96174 0.89541 0.94633 1.21528 1.07273 1.00715 1.02027 1.22563 1.01176 0.89540 0.96630 1.48818 1.31849 1.11193 1.17961 1.19771 0.94798 0.72355 0.99990 1.22108 1.42930 1.00880 0.98641 0.91804 1.25923 0.95393 0.91785 1.05095 1.70853 1.42396 1.34893 1.05912 0.83421 0.76304 0.76205 0.73712 1.20550 1.21244 1.21090 1.77396 1.14246 1.05577 1.15576 1.74693 1.04673 1.18279 1.09990 1.81986 1.20278 0.90248 1.11636 0.90644 0.89832 0.91625 0.88242 0.87568 0.77601 0.74398 0.82041 0.81419 0.93576 0.94710 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.55 10.12 37.16 0.38 -0.18 16 2 C 0.12 0.39 7.26 -4.04 -0.03 0.36 16 3 N -0.36 -2.90 3.69 -61.06 -0.23 -3.12 16 4 C 0.10 0.85 11.27 -16.83 -0.19 0.66 16 5 C -0.10 -1.21 6.99 -83.56 -0.58 -1.80 16 6 C 0.61 9.49 7.78 -12.49 -0.10 9.39 16 7 O -0.52 -8.73 13.99 5.27 0.07 -8.66 16 8 N -0.61 -10.60 5.44 -12.08 -0.07 -10.67 16 9 C 0.26 5.42 8.11 -154.43 -1.25 4.16 16 10 C -0.28 -5.66 9.60 -39.83 -0.38 -6.04 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 12 N -0.32 -7.53 3.67 -62.56 -0.23 -7.75 16 13 C 0.25 6.38 5.57 -5.19 -0.03 6.35 16 14 C -0.61 -17.33 9.24 -34.44 -0.32 -17.65 16 15 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 16 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 17 N -0.91 -26.60 13.65 55.43 0.76 -25.84 16 18 Si 1.08 25.31 29.90 -169.99 -5.08 20.23 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 N -0.30 -7.12 12.42 31.43 0.39 -6.73 16 23 N -0.20 -2.72 12.04 32.84 0.40 -2.32 16 24 N -0.06 -0.71 13.65 60.35 0.82 0.11 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.11 0.05 8.08 -51.93 -0.42 -0.37 16 30 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.42 6.66 8.51 -40.82 -0.35 6.31 16 32 H 0.16 3.03 5.91 -52.48 -0.31 2.72 16 33 H 0.17 2.72 8.06 -52.48 -0.42 2.29 16 34 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 35 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 36 H 0.27 7.66 7.22 -40.82 -0.29 7.36 16 LS Contribution 324.77 15.07 4.89 4.89 Total: -1.00 -35.51 324.77 -5.01 -40.52 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -3.94 Total: 2.71 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.80 Total: -3.37 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 1.85 Total: -56.33 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.07 Total: -8.66 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.51 -5.01 -40.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586591863.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.815 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds