Wall clock time and date at job start Tue Mar 31 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47220 * 2 1 4 4 C 1.34824 * 126.59058 * 125.31565 * 3 2 1 5 5 C 1.36610 * 106.83452 * 180.12950 * 4 3 2 6 6 C 1.47498 * 125.77237 * 179.83976 * 5 4 3 7 7 O 1.21604 * 120.00032 * 359.72084 * 6 5 4 8 8 N 1.34779 * 120.00114 * 179.71782 * 6 5 4 9 9 C 1.40104 * 120.00304 * 180.02562 * 8 6 5 10 10 C 1.40421 * 125.97199 * 359.97438 * 9 8 6 11 11 C 1.35232 * 107.86634 * 179.71480 * 10 9 8 12 12 N 1.34966 * 107.86400 * 0.42961 * 11 10 9 13 13 C 1.46500 * 125.97782 * 179.83405 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71059 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 N 1.31226 * 125.97848 * 179.97438 * 9 8 6 23 23 N 1.34405 * 108.45741 * 359.58118 * 5 4 3 24 24 N 1.28763 * 109.52473 * 0.26196 * 23 5 4 25 25 H 1.09000 * 109.47315 * 59.99164 * 1 2 3 26 26 H 1.08994 * 109.47495 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46859 * 299.99698 * 1 2 3 28 28 H 1.09002 * 109.46391 * 240.00541 * 2 1 3 29 29 H 1.08992 * 109.47092 * 120.00258 * 2 1 3 30 30 H 1.07997 * 126.58333 * 359.97438 * 4 3 2 31 31 H 0.96998 * 119.99902 * 0.02562 * 8 6 5 32 32 H 1.08004 * 126.06605 * 359.97438 * 10 9 8 33 33 H 1.08006 * 126.07172 * 180.29130 * 11 10 9 34 34 H 1.09004 * 109.47078 * 4.71821 * 13 12 11 35 35 H 1.08993 * 109.47364 * 244.71592 * 13 12 11 36 36 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8763 1.9303 0.8833 5 6 3.0509 3.2323 0.5082 6 6 3.9078 4.2190 1.1920 7 8 4.5320 3.8978 2.1850 8 7 3.9991 5.4768 0.7163 9 6 4.8135 6.4139 1.3654 10 6 5.5851 6.1801 2.5151 11 6 6.2292 7.3287 2.8232 12 7 5.8745 8.2593 1.9123 13 6 6.3393 9.6481 1.8750 14 6 6.9478 9.9383 0.5271 15 1 6.9841 9.1656 -0.2265 16 6 7.4580 11.1901 0.2561 17 7 7.4089 12.1326 1.1720 18 14 8.2115 11.5500 -1.4149 19 1 8.6774 12.9595 -1.4547 20 1 9.3634 10.6412 -1.6445 21 1 7.1928 11.3352 -2.4738 22 7 4.9886 7.6636 1.0054 23 7 2.3142 3.4604 -0.5926 24 7 1.6885 2.3845 -0.9223 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.3352 1.4365 1.7270 31 1 3.5010 5.7331 -0.0756 32 1 5.6553 5.2473 3.0549 33 1 6.9054 7.4758 3.6523 34 1 7.0881 9.8016 2.6522 35 1 5.4966 10.3181 2.0451 36 1 7.0174 11.9459 2.0396 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586591863.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:53 Heat of formation + Delta-G solvation = 117.731238 kcal Electronic energy + Delta-G solvation = -21511.086669 eV Core-core repulsion = 18033.673893 eV Total energy + Delta-G solvation = -3477.412776 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.31938 -42.25321 -40.40156 -36.50541 -36.35411 -35.51582 -32.87585 -32.35022 -31.28584 -30.99993 -28.25220 -25.81318 -25.50772 -24.60023 -22.80714 -22.67804 -21.91487 -20.87507 -19.26741 -19.04105 -18.20060 -17.35750 -17.22365 -16.94903 -16.39622 -15.87777 -15.72833 -15.70819 -15.47921 -15.07335 -14.97558 -14.15492 -13.94437 -13.82648 -13.69987 -13.38023 -13.23402 -13.04891 -12.62080 -12.60471 -12.07596 -12.05974 -11.95235 -11.69387 -11.35685 -11.19258 -11.00717 -10.69147 -10.43340 -9.84754 -9.21887 -8.77506 -6.55291 0.08332 0.39721 1.01595 1.09150 1.33634 1.51047 1.57630 1.74089 1.79323 2.23782 2.34496 2.48963 3.01370 3.03261 3.35185 3.72543 3.89382 3.90284 4.01033 4.14516 4.28271 4.33084 4.54580 4.56534 4.72048 4.75840 4.79851 4.83060 4.92962 5.05672 5.24687 5.47042 5.55577 5.79120 5.92726 6.09125 6.27703 6.42434 6.74642 6.93758 6.96111 7.19890 8.58805 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.031830 B = 0.002788 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.468276 B =10041.679425 C =10651.406889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.106 3.894 3 N -0.347 5.347 4 C 0.125 3.875 5 C -0.125 4.125 6 C 0.618 3.382 7 O -0.531 6.531 8 N -0.618 5.618 9 C 0.267 3.733 10 C -0.286 4.286 11 C 0.058 3.942 12 N -0.343 5.343 13 C 0.259 3.741 14 C -0.622 4.622 15 H 0.043 0.957 16 C -0.019 4.019 17 N -0.922 5.922 18 Si 1.119 2.881 19 H -0.274 1.274 20 H -0.270 1.270 21 H -0.278 1.278 22 N -0.348 5.348 23 N -0.231 5.231 24 N -0.083 5.083 25 H 0.053 0.947 26 H 0.110 0.890 27 H 0.056 0.944 28 H 0.115 0.885 29 H 0.146 0.854 30 H 0.247 0.753 31 H 0.423 0.577 32 H 0.178 0.822 33 H 0.207 0.793 34 H 0.058 0.942 35 H 0.016 0.984 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.059 -28.421 1.514 30.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.132 5.132 4 C -0.034 4.034 5 C -0.265 4.265 6 C 0.404 3.596 7 O -0.405 6.405 8 N -0.266 5.266 9 C 0.012 3.988 10 C -0.317 4.317 11 C -0.091 4.091 12 N -0.124 5.124 13 C 0.140 3.860 14 C -0.660 4.660 15 H 0.062 0.938 16 C -0.219 4.219 17 N -0.558 5.558 18 Si 0.940 3.060 19 H -0.198 1.198 20 H -0.196 1.196 21 H -0.203 1.203 22 N -0.179 5.179 23 N -0.104 5.104 24 N -0.064 5.064 25 H 0.072 0.928 26 H 0.128 0.872 27 H 0.075 0.925 28 H 0.133 0.867 29 H 0.164 0.836 30 H 0.263 0.737 31 H 0.260 0.740 32 H 0.195 0.805 33 H 0.223 0.777 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.031 -26.196 -0.766 28.434 hybrid contribution -0.414 -1.438 1.906 2.423 sum -11.445 -27.633 1.140 29.931 Atomic orbital electron populations 1.22092 0.92722 1.05001 1.02628 1.22629 0.96914 0.73696 1.07980 1.51018 1.30239 1.13314 1.18635 1.23911 0.91290 0.92269 0.95900 1.21037 1.09259 0.95782 1.00440 1.16932 0.79988 0.79875 0.82783 1.90710 1.45570 1.78698 1.25564 1.42332 1.44878 1.08717 1.30658 1.19400 0.95608 0.89186 0.94598 1.21774 1.06951 1.01194 1.01753 1.23250 1.00767 0.88597 0.96441 1.48605 1.33328 1.11056 1.19458 1.19439 0.94032 0.73612 0.98942 1.22288 1.43419 1.00664 0.99615 0.93819 1.27259 0.95290 0.91607 1.07707 1.70945 1.43392 1.35331 1.06170 0.82889 0.76315 0.76651 0.70151 1.19845 1.19558 1.20321 1.77306 1.16010 1.07270 1.17273 1.74671 1.05452 1.19542 1.10767 1.81906 1.20716 0.90808 1.12976 0.92776 0.87171 0.92527 0.86691 0.83610 0.73692 0.74004 0.80507 0.77662 0.92460 0.96580 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.12 71.98 0.73 0.05 16 2 C 0.11 0.31 7.26 86.38 0.63 0.94 16 3 N -0.35 -4.65 3.69 -347.08 -1.28 -5.93 16 4 C 0.12 1.81 11.27 83.85 0.95 2.76 16 5 C -0.13 -3.02 6.99 40.81 0.29 -2.73 16 6 C 0.62 18.69 7.78 86.68 0.67 19.36 16 7 O -0.53 -17.09 13.99 -4.04 -0.06 -17.14 16 8 N -0.62 -21.54 5.44 -310.40 -1.69 -23.23 16 9 C 0.27 11.21 8.11 133.34 1.08 12.30 16 10 C -0.29 -11.13 9.60 22.11 0.21 -10.92 16 11 C 0.06 2.27 11.43 83.52 0.95 3.22 16 12 N -0.34 -16.50 3.67 -351.84 -1.29 -17.79 16 13 C 0.26 13.57 5.57 85.64 0.48 14.05 16 14 C -0.62 -36.17 9.24 25.60 0.24 -35.93 16 15 H 0.04 2.67 7.81 -2.91 -0.02 2.65 16 16 C -0.02 -1.08 5.46 84.65 0.46 -0.62 16 17 N -0.92 -54.60 13.65 21.45 0.29 -54.31 16 18 Si 1.12 50.85 29.90 68.60 2.05 52.90 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 N -0.35 -17.09 12.42 -54.47 -0.68 -17.76 16 23 N -0.23 -6.15 12.04 -50.00 -0.60 -6.75 16 24 N -0.08 -1.88 13.65 37.02 0.51 -1.37 16 25 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.15 -0.63 8.08 -2.39 -0.02 -0.65 16 30 H 0.25 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.42 13.90 8.51 -92.71 -0.79 13.11 16 32 H 0.18 6.32 5.91 -2.91 -0.02 6.30 16 33 H 0.21 6.19 8.06 -2.91 -0.02 6.17 16 34 H 0.06 2.84 7.94 -2.39 -0.02 2.82 16 35 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 36 H 0.26 15.26 7.22 -92.71 -0.67 14.59 16 Total: -1.00 -78.99 324.77 4.38 -74.61 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.44 Total: 14.30 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 6.68 Total: 2.47 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -4.74 Total: -127.15 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.06 Total: -17.14 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.05 Total: 52.90 kcal Total: -78.99 4.38 -74.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586591863.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.341 kcal (2) G-P(sol) polarization free energy of solvation -78.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds