Wall clock time and date at job start Tue Mar 31 2020 06:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47360 * 2 1 4 4 C 1.36970 * 119.99907 * 270.53551 * 3 2 1 5 5 H 1.08006 * 119.99573 * 127.22136 * 4 3 2 6 6 C 1.38964 * 120.00249 * 307.22020 * 4 3 2 7 7 N 1.31422 * 120.00147 * 171.24367 * 6 4 3 8 8 Si 1.86802 * 120.00116 * 351.24852 * 6 4 3 9 9 H 1.48506 * 109.46869 * 91.25661 * 8 6 4 10 10 H 1.48495 * 109.46862 * 211.25694 * 8 6 4 11 11 H 1.48497 * 109.46980 * 331.25638 * 8 6 4 12 12 C 1.34777 * 119.99940 * 90.53719 * 3 2 1 13 13 O 1.21651 * 119.99845 * 3.28809 * 12 3 2 14 14 C 1.47226 * 119.99874 * 183.28226 * 12 3 2 15 15 C 1.41912 * 126.53800 * 353.30868 * 14 12 3 16 16 C 1.35697 * 107.06877 * 180.26408 * 15 14 12 17 17 C 1.47998 * 125.75250 * 179.75099 * 16 15 14 18 18 N 1.34172 * 126.70165 * 359.65234 * 17 16 15 19 19 N 1.28985 * 107.25664 * 179.89964 * 18 17 16 20 20 N 1.28721 * 108.98345 * 0.37699 * 19 18 17 21 21 H 0.97001 * 125.32025 * 179.80513 * 20 19 18 22 22 N 1.28872 * 109.35630 * 359.75811 * 20 19 18 23 23 N 1.37327 * 108.49209 * 359.74038 * 16 15 14 24 24 H 0.96998 * 125.36345 * 180.02562 * 23 16 15 25 25 C 1.34801 * 109.26979 * 0.02562 * 23 16 15 26 26 C 1.50703 * 125.87942 * 179.97438 * 25 23 16 27 27 H 1.08999 * 109.47079 * 300.00609 * 1 2 3 28 28 H 1.09009 * 109.46485 * 59.99957 * 1 2 3 29 29 H 1.08999 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46932 * 239.99915 * 2 1 3 31 31 H 1.08999 * 109.46993 * 120.00226 * 2 1 3 32 32 H 0.96995 * 120.00584 * 180.02562 * 7 6 4 33 33 H 1.08006 * 126.46505 * 0.04000 * 15 14 12 34 34 H 1.08997 * 109.46722 * 90.02894 * 26 25 23 35 35 H 1.08998 * 109.47245 * 330.02879 * 26 25 23 36 36 H 1.09000 * 109.47222 * 210.02432 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2363 2.0305 -1.1862 5 1 1.7858 2.9959 -1.3639 6 6 3.0369 1.4473 -2.1608 7 7 3.1086 1.9823 -3.3590 8 14 4.0110 -0.0975 -1.7679 9 1 3.2002 -1.2940 -2.1087 10 1 5.2655 -0.1069 -2.5624 11 1 4.3417 -0.1194 -0.3204 12 6 2.2534 2.0128 1.1672 13 8 2.1174 1.4173 2.2192 14 6 2.6748 3.4235 1.1689 15 6 3.0030 4.2086 0.0332 16 6 3.3406 5.4424 0.4860 17 6 3.7596 6.5870 -0.3536 18 7 3.8822 6.5989 -1.6896 19 7 4.2661 7.7829 -2.0281 20 7 4.3944 8.5007 -0.9673 21 1 4.6748 9.4291 -0.9489 22 7 4.0911 7.7933 0.0664 23 7 3.2278 5.4501 1.8546 24 1 3.4106 6.2102 2.4288 25 6 2.8230 4.2347 2.2744 26 6 2.5802 3.8303 3.7057 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.6671 1.5751 -4.0395 33 1 2.9903 3.8842 -0.9969 34 1 1.5415 4.0305 3.9685 35 1 3.2374 4.4016 4.3612 36 1 2.7859 2.7663 3.8225 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590679853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:17 Heat of formation + Delta-G solvation = 150.113653 kcal Electronic energy + Delta-G solvation = -23187.874848 eV Core-core repulsion = 19711.866279 eV Total energy + Delta-G solvation = -3476.008569 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.18097 -40.83809 -38.29752 -34.99813 -34.12984 -33.16700 -32.13463 -31.23868 -30.69709 -29.40241 -26.59848 -24.84380 -24.28072 -23.41043 -22.68472 -20.75280 -20.21365 -18.86999 -18.49715 -17.26603 -16.91364 -16.37835 -15.56987 -15.05578 -14.50968 -14.12265 -13.79549 -13.64696 -13.38432 -12.98845 -12.90205 -12.47823 -12.35156 -12.12956 -11.99162 -11.86525 -11.82890 -11.28084 -11.12043 -11.09625 -10.87721 -10.84954 -10.62580 -10.52509 -9.85394 -9.76177 -9.01846 -8.52610 -8.28100 -7.57402 -7.30571 -6.29231 -4.08784 1.17655 1.81411 2.39876 2.57040 3.17578 3.26468 3.31605 3.41109 3.46242 4.09156 4.25605 4.54450 4.58108 4.74652 5.07166 5.31498 5.49676 5.60708 5.70883 5.89972 5.92882 6.10517 6.17320 6.19932 6.26709 6.41373 6.51255 6.53449 6.69990 6.76330 6.96563 7.03273 7.38229 7.57325 7.68153 7.80854 8.25594 8.36390 8.40948 9.11285 9.47190 9.84098 10.77172 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.006480 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.366642 B = 4320.043994 C = 5673.349649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.098 3.902 3 N -0.464 5.464 4 C -0.345 4.345 5 H 0.112 0.888 6 C 0.071 3.929 7 N -0.862 5.862 8 Si 0.878 3.122 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.260 1.260 12 C 0.562 3.438 13 O -0.603 6.603 14 C -0.195 4.195 15 C -0.054 4.054 16 C 0.015 3.985 17 C 0.269 3.731 18 N -0.245 5.245 19 N -0.052 5.052 20 N -0.238 5.238 21 H 0.470 0.530 22 N -0.327 5.327 23 N -0.536 5.536 24 H 0.412 0.588 25 C 0.101 3.899 26 C -0.088 4.088 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.275 0.725 33 H 0.200 0.800 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.291 9.519 7.421 12.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.025 4.025 3 N -0.185 5.185 4 C -0.472 4.472 5 H 0.129 0.871 6 C -0.137 4.137 7 N -0.497 5.497 8 Si 0.706 3.294 9 H -0.201 1.201 10 H -0.216 1.216 11 H -0.184 1.184 12 C 0.353 3.647 13 O -0.489 6.489 14 C -0.204 4.204 15 C -0.081 4.081 16 C -0.095 4.095 17 C -0.010 4.010 18 N -0.118 5.118 19 N -0.048 5.048 20 N -0.082 5.082 21 H 0.323 0.677 22 N -0.180 5.180 23 N -0.132 5.132 24 H 0.249 0.751 25 C -0.021 4.021 26 C -0.146 4.146 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.217 0.783 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.483 9.644 7.159 12.102 hybrid contribution 0.773 0.174 0.483 0.927 sum 2.256 9.817 7.642 12.644 Atomic orbital electron populations 1.21997 0.96689 1.00429 1.02179 1.21545 0.94232 0.85800 1.00891 1.43445 1.57989 1.11500 1.05522 1.19198 1.30610 1.06168 0.91231 0.87075 1.25487 0.95555 0.97692 0.94977 1.69670 1.37528 1.40080 1.02426 0.86843 0.79802 0.83076 0.79726 1.20145 1.21589 1.18448 1.17495 0.78142 0.85447 0.83571 1.90559 1.58287 1.68203 1.31876 1.19388 1.14005 0.95220 0.91817 1.22888 0.94367 0.88358 1.02530 1.16664 1.18924 0.92687 0.81207 1.22622 0.99023 0.90001 0.89331 1.76343 1.15716 1.09296 1.10474 1.78960 1.14061 0.98274 1.13473 1.47573 1.43981 1.15324 1.01349 0.67657 1.74900 1.22479 1.05235 1.15345 1.41367 1.54009 1.11752 1.06039 0.75098 1.20725 1.00907 0.84083 0.96360 1.20532 1.01536 1.04667 0.87843 0.92970 0.92048 0.93280 0.91952 0.91497 0.91513 0.78304 0.90913 0.92503 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 10.24 37.16 0.38 -2.57 16 2 C 0.10 2.16 4.89 -4.04 -0.02 2.14 16 3 N -0.46 -11.23 1.94 -116.10 -0.22 -11.46 16 4 C -0.34 -8.83 6.88 -14.99 -0.10 -8.93 16 5 H 0.11 3.00 5.90 -52.48 -0.31 2.69 16 6 C 0.07 1.85 5.43 -17.46 -0.09 1.76 16 7 N -0.86 -23.61 13.96 55.50 0.77 -22.84 16 8 Si 0.88 20.89 25.06 -169.99 -4.26 16.63 16 9 H -0.27 -6.27 6.79 56.52 0.38 -5.89 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.56 13.37 7.62 -12.61 -0.10 13.28 16 13 O -0.60 -14.65 14.32 5.23 0.07 -14.57 16 14 C -0.19 -4.18 6.04 -104.96 -0.63 -4.81 16 15 C -0.05 -1.17 8.94 -39.09 -0.35 -1.51 16 16 C 0.02 0.29 7.08 -82.31 -0.58 -0.30 16 17 C 0.27 4.71 8.20 -156.27 -1.28 3.42 16 18 N -0.24 -4.61 12.52 32.09 0.40 -4.21 16 19 N -0.05 -0.79 13.47 60.35 0.81 0.02 16 20 N -0.24 -2.72 7.90 60.35 0.48 -2.24 16 21 H 0.47 2.76 8.96 -340.34 -3.05 -0.29 16 22 N -0.33 -4.59 12.41 32.11 0.40 -4.20 16 23 N -0.54 -8.29 6.01 -5.48 -0.03 -8.32 16 24 H 0.41 4.94 8.96 -40.82 -0.37 4.57 16 25 C 0.10 1.76 7.22 -81.40 -0.59 1.17 16 26 C -0.09 -1.26 9.96 36.01 0.36 -0.90 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.39 4.25 -51.93 -0.22 1.17 16 31 H 0.07 1.46 7.36 -51.93 -0.38 1.08 16 32 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.20 4.85 4.81 -52.48 -0.25 4.59 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 1.77 6.33 -51.93 -0.33 1.44 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -31.54 306.65 -6.14 -37.68 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.18 Total: 6.14 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -3.01 Total: 2.75 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 2.61 Total: -53.25 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.07 Total: -14.57 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.26 Total: 16.63 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.54 -6.14 -37.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590679853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.795 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds