Wall clock time and date at job start Tue Mar 31 2020 06:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47360 * 2 1 4 4 C 1.36970 * 119.99907 * 270.53551 * 3 2 1 5 5 H 1.08006 * 119.99573 * 127.22136 * 4 3 2 6 6 C 1.38964 * 120.00249 * 307.22020 * 4 3 2 7 7 N 1.31422 * 120.00147 * 171.24367 * 6 4 3 8 8 Si 1.86802 * 120.00116 * 351.24852 * 6 4 3 9 9 H 1.48506 * 109.46869 * 91.25661 * 8 6 4 10 10 H 1.48495 * 109.46862 * 211.25694 * 8 6 4 11 11 H 1.48497 * 109.46980 * 331.25638 * 8 6 4 12 12 C 1.34777 * 119.99940 * 90.53719 * 3 2 1 13 13 O 1.21651 * 119.99845 * 3.28809 * 12 3 2 14 14 C 1.47226 * 119.99874 * 183.28226 * 12 3 2 15 15 C 1.41912 * 126.53800 * 353.30868 * 14 12 3 16 16 C 1.35697 * 107.06877 * 180.26408 * 15 14 12 17 17 C 1.47998 * 125.75250 * 179.75099 * 16 15 14 18 18 N 1.34172 * 126.70165 * 359.65234 * 17 16 15 19 19 N 1.28985 * 107.25664 * 179.89964 * 18 17 16 20 20 N 1.28721 * 108.98345 * 0.37699 * 19 18 17 21 21 H 0.97001 * 125.32025 * 179.80513 * 20 19 18 22 22 N 1.28872 * 109.35630 * 359.75811 * 20 19 18 23 23 N 1.37327 * 108.49209 * 359.74038 * 16 15 14 24 24 H 0.96998 * 125.36345 * 180.02562 * 23 16 15 25 25 C 1.34801 * 109.26979 * 0.02562 * 23 16 15 26 26 C 1.50703 * 125.87942 * 179.97438 * 25 23 16 27 27 H 1.08999 * 109.47079 * 300.00609 * 1 2 3 28 28 H 1.09009 * 109.46485 * 59.99957 * 1 2 3 29 29 H 1.08999 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46932 * 239.99915 * 2 1 3 31 31 H 1.08999 * 109.46993 * 120.00226 * 2 1 3 32 32 H 0.96995 * 120.00584 * 180.02562 * 7 6 4 33 33 H 1.08006 * 126.46505 * 0.04000 * 15 14 12 34 34 H 1.08997 * 109.46722 * 90.02894 * 26 25 23 35 35 H 1.08998 * 109.47245 * 330.02879 * 26 25 23 36 36 H 1.09000 * 109.47222 * 210.02432 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2363 2.0305 -1.1862 5 1 1.7858 2.9959 -1.3639 6 6 3.0369 1.4473 -2.1608 7 7 3.1086 1.9823 -3.3590 8 14 4.0110 -0.0975 -1.7679 9 1 3.2002 -1.2940 -2.1087 10 1 5.2655 -0.1069 -2.5624 11 1 4.3417 -0.1194 -0.3204 12 6 2.2534 2.0128 1.1672 13 8 2.1174 1.4173 2.2192 14 6 2.6748 3.4235 1.1689 15 6 3.0030 4.2086 0.0332 16 6 3.3406 5.4424 0.4860 17 6 3.7596 6.5870 -0.3536 18 7 3.8822 6.5989 -1.6896 19 7 4.2661 7.7829 -2.0281 20 7 4.3944 8.5007 -0.9673 21 1 4.6748 9.4291 -0.9489 22 7 4.0911 7.7933 0.0664 23 7 3.2278 5.4501 1.8546 24 1 3.4106 6.2102 2.4288 25 6 2.8230 4.2347 2.2744 26 6 2.5802 3.8303 3.7057 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.6671 1.5751 -4.0395 33 1 2.9903 3.8842 -0.9969 34 1 1.5415 4.0305 3.9685 35 1 3.2374 4.4016 4.3612 36 1 2.7859 2.7663 3.8225 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590679853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:16 Heat of formation + Delta-G solvation = 126.723789 kcal Electronic energy + Delta-G solvation = -23188.889109 eV Core-core repulsion = 19711.866279 eV Total energy + Delta-G solvation = -3477.022830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.41578 -42.31954 -40.09295 -36.85414 -35.39256 -34.44540 -34.06018 -32.83825 -32.01842 -31.03397 -27.94364 -26.75404 -25.55194 -24.99882 -24.11275 -22.34601 -21.69696 -20.44713 -19.99656 -18.70357 -18.13787 -18.10742 -17.37013 -16.82363 -16.06429 -15.70979 -15.35928 -15.17075 -14.91527 -14.70740 -14.57745 -14.06718 -13.66459 -13.63367 -13.53112 -13.46716 -13.22394 -13.00820 -12.63786 -12.56043 -12.37687 -12.28860 -12.13301 -11.85281 -11.79030 -11.54296 -10.94633 -10.40201 -9.82968 -9.38867 -8.82852 -8.31124 -6.11295 -0.03720 0.45226 0.99069 1.26859 1.38046 1.42165 1.47890 1.93231 1.94595 2.28882 2.74540 2.77643 2.90502 3.12406 3.42395 4.04854 4.17121 4.20471 4.37781 4.42733 4.48512 4.52200 4.62415 4.77385 4.86362 4.93440 5.07078 5.16873 5.28366 5.37459 5.46124 5.65860 5.70570 5.88608 5.99231 6.27020 6.39566 6.57454 7.12003 7.16091 7.55891 7.94490 8.78312 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.006480 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.366642 B = 4320.043994 C = 5673.349649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.091 3.909 3 N -0.479 5.479 4 C -0.326 4.326 5 H 0.088 0.912 6 C 0.034 3.966 7 N -0.899 5.899 8 Si 0.923 3.077 9 H -0.256 1.256 10 H -0.290 1.290 11 H -0.273 1.273 12 C 0.556 3.444 13 O -0.612 6.612 14 C -0.241 4.241 15 C -0.083 4.083 16 C 0.026 3.974 17 C 0.250 3.750 18 N -0.293 5.293 19 N -0.055 5.055 20 N -0.196 5.196 21 H 0.495 0.505 22 N -0.301 5.301 23 N -0.508 5.508 24 H 0.435 0.565 25 C 0.126 3.874 26 C -0.085 4.085 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.276 0.724 33 H 0.164 0.836 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 10.894 9.547 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 N -0.200 5.200 4 C -0.454 4.454 5 H 0.106 0.894 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.750 3.250 9 H -0.181 1.181 10 H -0.216 1.216 11 H -0.197 1.197 12 C 0.349 3.651 13 O -0.500 6.500 14 C -0.250 4.250 15 C -0.111 4.111 16 C -0.085 4.085 17 C -0.029 4.029 18 N -0.165 5.165 19 N -0.050 5.050 20 N -0.048 5.048 21 H 0.354 0.646 22 N -0.155 5.155 23 N -0.106 5.106 24 H 0.276 0.724 25 C 0.002 3.998 26 C -0.142 4.142 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.181 0.819 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.819 11.052 9.288 14.551 hybrid contribution 0.691 -0.020 -0.081 0.696 sum 2.511 11.033 9.207 14.587 Atomic orbital electron populations 1.21905 0.94461 1.02466 1.01403 1.21680 0.96184 0.84664 1.00647 1.43591 1.58867 1.12321 1.05193 1.18969 1.29652 1.05294 0.91513 0.89445 1.25931 0.96339 0.99895 0.94855 1.69747 1.38989 1.41627 1.03295 0.86131 0.78956 0.81433 0.78491 1.18125 1.21647 1.19744 1.17889 0.77565 0.86460 0.83233 1.90530 1.58817 1.68794 1.31863 1.19401 1.17204 0.94899 0.93494 1.22380 0.97185 0.90319 1.01179 1.16467 1.17599 0.92035 0.82375 1.22466 1.00646 0.90801 0.89000 1.76342 1.17482 1.11042 1.11639 1.78903 1.14374 0.97736 1.14037 1.47669 1.40961 1.16027 1.00094 0.64555 1.74853 1.21217 1.03970 1.15451 1.41219 1.52292 1.11964 1.05110 0.72442 1.21063 0.98187 0.83634 0.96893 1.20609 1.03623 1.03817 0.86126 0.93341 0.93119 0.89826 0.92386 0.91371 0.91433 0.81936 0.89188 0.88241 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 10.24 71.98 0.74 -4.67 16 2 C 0.09 4.00 4.89 86.38 0.42 4.42 16 3 N -0.48 -23.75 1.94 -639.45 -1.24 -24.99 16 4 C -0.33 -17.47 6.88 84.06 0.58 -16.89 16 5 H 0.09 5.06 5.90 -2.91 -0.02 5.05 16 6 C 0.03 1.83 5.43 84.93 0.46 2.29 16 7 N -0.90 -51.32 13.96 21.67 0.30 -51.02 16 8 Si 0.92 43.85 25.06 68.60 1.72 45.57 16 9 H -0.26 -11.26 6.79 99.48 0.68 -10.58 16 10 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 11 H -0.27 -13.37 7.11 99.48 0.71 -12.67 16 12 C 0.56 26.92 7.62 86.61 0.66 27.58 16 13 O -0.61 -29.81 14.32 -4.19 -0.06 -29.87 16 14 C -0.24 -10.47 6.04 -20.08 -0.12 -10.59 16 15 C -0.08 -3.71 8.94 22.59 0.20 -3.51 16 16 C 0.03 0.97 7.08 40.28 0.29 1.25 16 17 C 0.25 8.55 8.20 137.15 1.12 9.67 16 18 N -0.29 -11.11 12.52 -52.38 -0.66 -11.77 16 19 N -0.06 -1.62 13.47 37.02 0.50 -1.12 16 20 N -0.20 -3.97 7.90 37.02 0.29 -3.67 16 21 H 0.50 4.04 8.96 -347.51 -3.12 0.92 16 22 N -0.30 -7.67 12.41 -52.33 -0.65 -8.32 16 23 N -0.51 -14.58 6.01 -171.25 -1.03 -15.61 16 24 H 0.43 8.71 8.96 -92.71 -0.83 7.88 16 25 C 0.13 4.18 7.22 42.03 0.30 4.48 16 26 C -0.08 -2.15 9.96 71.24 0.71 -1.44 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.98 8.14 -2.38 -0.02 1.97 16 29 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.06 2.58 4.25 -2.39 -0.01 2.57 16 31 H 0.07 2.96 7.36 -2.39 -0.02 2.94 16 32 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 33 H 0.16 8.52 4.81 -2.91 -0.01 8.51 16 34 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 2.63 6.33 -2.39 -0.02 2.61 16 Total: -1.00 -71.57 306.65 1.74 -69.83 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -2.80 Total: 18.36 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 5.36 Total: 12.60 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -2.48 Total: -116.49 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.06 Total: -29.87 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.72 Total: 45.57 kcal Total: -71.57 1.74 -69.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590679853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.551 kcal (2) G-P(sol) polarization free energy of solvation -71.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds