Wall clock time and date at job start Tue Mar 31 2020 06:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99782 * 2 1 4 4 H 1.48504 * 109.46882 * 269.99893 * 3 2 1 5 5 H 1.48499 * 109.47311 * 30.00069 * 3 2 1 6 6 H 1.48504 * 109.47103 * 149.99961 * 3 2 1 7 7 C 1.38811 * 120.00301 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00538 * 204.75019 * 7 2 1 9 9 N 1.36943 * 119.99794 * 24.75303 * 7 2 1 10 10 C 1.46494 * 119.99964 * 189.27630 * 9 7 2 11 11 C 1.53007 * 109.47069 * 90.00238 * 10 9 7 12 12 N 1.46904 * 109.47135 * 180.02562 * 11 10 9 13 13 C 1.47903 * 110.99867 * 170.00121 * 12 11 10 14 14 C 1.54600 * 102.62675 * 94.65821 * 13 12 11 15 15 C 1.51573 * 102.82103 * 25.60611 * 14 13 12 16 16 C 1.37913 * 131.57491 * 163.76672 * 15 14 13 17 17 C 1.38305 * 120.08584 * 180.32339 * 16 15 14 18 18 C 1.38306 * 119.87888 * 359.97438 * 17 16 15 19 19 C 1.37910 * 120.26467 * 359.86720 * 18 17 16 20 20 C 1.38964 * 107.94183 * 343.81103 * 15 14 13 21 21 C 1.46505 * 119.99741 * 9.28091 * 9 7 2 22 22 C 1.50699 * 109.46828 * 269.20458 * 21 9 7 23 23 O 1.20831 * 120.00096 * 359.97438 * 22 21 9 24 24 O 1.34229 * 119.99916 * 180.02562 * 22 21 9 25 25 H 0.96995 * 119.99905 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47400 * 330.00462 * 10 9 7 27 27 H 1.09001 * 109.47234 * 210.00285 * 10 9 7 28 28 H 1.08994 * 109.46954 * 60.00153 * 11 10 9 29 29 H 1.08995 * 109.46703 * 299.99580 * 11 10 9 30 30 H 1.08995 * 110.77681 * 212.94312 * 13 12 11 31 31 H 1.09001 * 110.77523 * 336.18129 * 13 12 11 32 32 H 1.09006 * 110.74205 * 143.93751 * 14 13 12 33 33 H 1.09001 * 110.74515 * 267.27389 * 14 13 12 34 34 H 1.08001 * 119.96012 * 0.29095 * 16 15 14 35 35 H 1.07998 * 120.05734 * 179.97438 * 17 16 15 36 36 H 1.08001 * 119.86490 * 179.89176 * 18 17 16 37 37 H 1.08008 * 119.89831 * 180.02562 * 19 18 17 38 38 H 1.08989 * 109.47311 * 29.20182 * 21 9 7 39 39 H 1.09000 * 109.46539 * 149.21060 * 21 9 7 40 40 H 0.96703 * 116.99952 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0159 -1.2449 0.3921 9 7 1.4200 -2.3338 -0.4955 10 6 2.0646 -3.6365 -0.3127 11 6 1.5806 -4.2660 0.9952 12 7 2.2275 -5.5721 1.1788 13 6 1.9731 -6.1035 2.5355 14 6 0.7398 -7.0098 2.3176 15 6 0.8533 -7.3862 0.8538 16 6 0.2516 -8.3841 0.1161 17 6 0.5372 -8.5191 -1.2305 18 6 1.4271 -7.6509 -1.8364 19 6 2.0290 -6.6493 -1.1040 20 6 1.7450 -6.5056 0.2532 21 6 0.1438 -2.2416 -1.2091 22 6 -0.9913 -2.4028 -0.2311 23 8 -0.7582 -2.5772 0.9416 24 8 -2.2613 -2.3535 -0.6629 25 1 -0.4850 0.8400 -0.0004 26 1 3.1459 -3.5047 -0.2741 27 1 1.8078 -4.2893 -1.1470 28 1 0.4994 -4.3979 0.9566 29 1 1.8376 -3.6133 1.8294 30 1 2.8239 -6.6864 2.8882 31 1 1.7451 -5.2955 3.2307 32 1 0.7957 -7.8963 2.9496 33 1 -0.1820 -6.4589 2.5042 34 1 -0.4430 -9.0614 0.5905 35 1 0.0661 -9.3009 -1.8076 36 1 1.6513 -7.7576 -2.8875 37 1 2.7228 -5.9744 -1.5833 38 1 0.0689 -1.2692 -1.6956 39 1 0.0903 -3.0292 -1.9608 40 1 -2.9554 -2.4624 0.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:55 Heat of formation + Delta-G solvation = -16.618534 kcal Electronic energy + Delta-G solvation = -23960.952498 eV Core-core repulsion = 20548.961471 eV Total energy + Delta-G solvation = -3411.991027 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.55956 -38.69039 -36.71107 -35.73412 -34.35826 -32.64016 -31.22349 -29.69611 -28.83899 -27.77917 -26.55808 -23.63077 -22.87846 -21.64859 -20.97372 -20.44059 -19.80119 -16.90931 -16.64128 -16.31127 -15.76725 -15.46911 -15.25590 -15.03051 -14.82827 -14.20794 -13.99966 -13.61449 -13.28033 -13.06035 -12.74511 -12.63439 -12.35644 -12.05576 -11.88545 -11.51151 -11.43906 -11.29477 -10.98211 -10.88296 -10.70533 -10.64120 -10.32838 -10.06695 -9.96106 -9.89634 -9.24484 -8.97788 -8.63422 -8.55236 -7.59201 -7.16189 -5.96191 -3.23129 1.49774 1.55902 3.35634 3.42839 3.44463 3.82736 3.92299 4.01571 4.35816 4.57684 4.72945 4.92299 5.13248 5.15643 5.25829 5.26209 5.37115 5.53925 5.58997 5.75752 5.83429 5.90698 5.95383 6.02050 6.13716 6.27086 6.34071 6.41789 6.51196 6.62655 6.65303 6.71383 6.83029 6.97189 6.99536 7.05595 7.36127 7.61156 7.69658 7.88566 8.13987 9.00018 9.45018 9.70001 10.10223 11.15584 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.005137 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.095360 B = 5449.019223 C = 5731.827482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.001 4.001 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.084 0.916 9 N -0.566 5.566 10 C 0.147 3.853 11 C 0.041 3.959 12 N -0.498 5.498 13 C 0.051 3.949 14 C -0.108 4.108 15 C -0.146 4.146 16 C -0.092 4.092 17 C -0.143 4.143 18 C -0.105 4.105 19 C -0.115 4.115 20 C 0.109 3.891 21 C 0.188 3.812 22 C 0.479 3.521 23 O -0.517 6.517 24 O -0.544 6.544 25 H 0.257 0.743 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.050 0.950 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.013 -14.143 -1.454 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.198 4.198 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.101 0.899 9 N -0.286 5.286 10 C 0.020 3.980 11 C -0.086 4.086 12 N -0.216 5.216 13 C -0.077 4.077 14 C -0.146 4.146 15 C -0.149 4.149 16 C -0.111 4.111 17 C -0.162 4.162 18 C -0.124 4.124 19 C -0.135 4.135 20 C 0.012 3.988 21 C 0.058 3.942 22 C 0.319 3.681 23 O -0.403 6.403 24 O -0.354 6.354 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.133 0.867 39 H 0.068 0.932 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.880 -13.809 -1.449 13.913 hybrid contribution -1.131 0.817 1.002 1.718 sum -0.251 -12.992 -0.447 13.002 Atomic orbital electron populations 1.69833 1.05305 1.25893 1.54099 1.24765 0.95211 0.98512 1.01349 0.86149 0.79059 0.83109 0.77691 1.21324 1.22004 1.20459 1.19361 0.96917 0.85054 1.36618 0.89868 1.44264 1.19025 1.02489 1.62825 1.21066 0.97213 0.86152 0.93524 1.23200 0.97163 0.85726 1.02465 1.60298 1.56119 1.03540 1.01647 1.23115 0.96217 0.97834 0.90505 1.21665 1.00112 1.00187 0.92664 1.21037 0.98267 0.99051 0.96519 1.20328 0.99497 0.97361 0.93893 1.20949 1.00207 1.00525 0.94485 1.20901 0.96989 0.94952 0.99541 1.20618 1.01655 0.99294 0.91908 1.19671 0.92854 0.93334 0.92923 1.20434 0.81065 1.02339 0.90322 1.25307 0.82046 0.69655 0.91043 1.90469 1.84232 1.46022 1.19612 1.84645 1.18409 1.86488 1.45898 0.93209 0.92149 0.93658 0.93507 0.90195 0.89913 0.89757 0.90178 0.90238 0.86718 0.86209 0.85851 0.85530 0.86738 0.93177 0.76635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.35 9.02 55.49 0.50 -24.85 16 2 C 0.00 -0.03 4.89 -17.43 -0.09 -0.11 16 3 Si 0.91 21.38 29.62 -169.99 -5.04 16.34 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.25 -6.63 9.70 -15.06 -0.15 -6.78 16 8 H 0.08 2.17 7.93 -52.49 -0.42 1.75 16 9 N -0.57 -13.66 2.09 -174.61 -0.37 -14.02 16 10 C 0.15 3.04 5.57 -4.04 -0.02 3.02 16 11 C 0.04 0.83 4.33 -3.82 -0.02 0.81 16 12 N -0.50 -8.59 5.06 -169.02 -0.85 -9.44 16 13 C 0.05 0.74 7.00 -2.43 -0.02 0.72 16 14 C -0.11 -1.48 6.97 -26.61 -0.19 -1.66 16 15 C -0.15 -2.20 6.23 -104.04 -0.65 -2.85 16 16 C -0.09 -1.21 10.03 -39.68 -0.40 -1.61 16 17 C -0.14 -1.74 10.06 -39.53 -0.40 -2.14 16 18 C -0.11 -1.34 10.02 -39.68 -0.40 -1.73 16 19 C -0.11 -1.71 8.55 -39.27 -0.34 -2.05 16 20 C 0.11 1.79 5.29 -83.41 -0.44 1.35 16 21 C 0.19 4.40 5.58 -5.19 -0.03 4.37 16 22 C 0.48 11.55 6.32 36.01 0.23 11.78 16 23 O -0.52 -13.83 14.42 -18.75 -0.27 -14.10 16 24 O -0.54 -11.32 13.42 -39.25 -0.53 -11.84 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.06 1.23 8.03 -51.93 -0.42 0.82 16 27 H 0.05 0.86 5.31 -51.93 -0.28 0.59 16 28 H 0.05 1.06 6.22 -51.93 -0.32 0.74 16 29 H 0.08 1.80 7.84 -51.93 -0.41 1.39 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.23 7.60 -51.93 -0.39 0.84 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.13 1.81 7.15 -52.48 -0.37 1.43 16 38 H 0.11 2.89 6.29 -51.94 -0.33 2.56 16 39 H 0.05 1.03 7.90 -51.93 -0.41 0.61 16 40 H 0.38 6.34 9.10 45.56 0.41 6.76 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -31.29 325.76 -9.14 -40.43 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.60 Total: 9.46 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.89 Total: 3.12 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.72 Total: -48.31 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.80 Total: -25.94 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.04 Total: 16.34 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.29 -9.14 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.808 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds