Wall clock time and date at job start Tue Mar 31 2020 06:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99782 * 2 1 4 4 H 1.48504 * 109.46882 * 269.99893 * 3 2 1 5 5 H 1.48499 * 109.47311 * 30.00069 * 3 2 1 6 6 H 1.48504 * 109.47103 * 149.99961 * 3 2 1 7 7 C 1.38811 * 120.00301 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00538 * 204.75019 * 7 2 1 9 9 N 1.36943 * 119.99794 * 24.75303 * 7 2 1 10 10 C 1.46494 * 119.99964 * 189.27630 * 9 7 2 11 11 C 1.53007 * 109.47069 * 90.00238 * 10 9 7 12 12 N 1.46904 * 109.47135 * 180.02562 * 11 10 9 13 13 C 1.47903 * 110.99867 * 170.00121 * 12 11 10 14 14 C 1.54600 * 102.62675 * 94.65821 * 13 12 11 15 15 C 1.51573 * 102.82103 * 25.60611 * 14 13 12 16 16 C 1.37913 * 131.57491 * 163.76672 * 15 14 13 17 17 C 1.38305 * 120.08584 * 180.32339 * 16 15 14 18 18 C 1.38306 * 119.87888 * 359.97438 * 17 16 15 19 19 C 1.37910 * 120.26467 * 359.86720 * 18 17 16 20 20 C 1.38964 * 107.94183 * 343.81103 * 15 14 13 21 21 C 1.46505 * 119.99741 * 9.28091 * 9 7 2 22 22 C 1.50699 * 109.46828 * 269.20458 * 21 9 7 23 23 O 1.20831 * 120.00096 * 359.97438 * 22 21 9 24 24 O 1.34229 * 119.99916 * 180.02562 * 22 21 9 25 25 H 0.96995 * 119.99905 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47400 * 330.00462 * 10 9 7 27 27 H 1.09001 * 109.47234 * 210.00285 * 10 9 7 28 28 H 1.08994 * 109.46954 * 60.00153 * 11 10 9 29 29 H 1.08995 * 109.46703 * 299.99580 * 11 10 9 30 30 H 1.08995 * 110.77681 * 212.94312 * 13 12 11 31 31 H 1.09001 * 110.77523 * 336.18129 * 13 12 11 32 32 H 1.09006 * 110.74205 * 143.93751 * 14 13 12 33 33 H 1.09001 * 110.74515 * 267.27389 * 14 13 12 34 34 H 1.08001 * 119.96012 * 0.29095 * 16 15 14 35 35 H 1.07998 * 120.05734 * 179.97438 * 17 16 15 36 36 H 1.08001 * 119.86490 * 179.89176 * 18 17 16 37 37 H 1.08008 * 119.89831 * 180.02562 * 19 18 17 38 38 H 1.08989 * 109.47311 * 29.20182 * 21 9 7 39 39 H 1.09000 * 109.46539 * 149.21060 * 21 9 7 40 40 H 0.96703 * 116.99952 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0159 -1.2449 0.3921 9 7 1.4200 -2.3338 -0.4955 10 6 2.0646 -3.6365 -0.3127 11 6 1.5806 -4.2660 0.9952 12 7 2.2275 -5.5721 1.1788 13 6 1.9731 -6.1035 2.5355 14 6 0.7398 -7.0098 2.3176 15 6 0.8533 -7.3862 0.8538 16 6 0.2516 -8.3841 0.1161 17 6 0.5372 -8.5191 -1.2305 18 6 1.4271 -7.6509 -1.8364 19 6 2.0290 -6.6493 -1.1040 20 6 1.7450 -6.5056 0.2532 21 6 0.1438 -2.2416 -1.2091 22 6 -0.9913 -2.4028 -0.2311 23 8 -0.7582 -2.5772 0.9416 24 8 -2.2613 -2.3535 -0.6629 25 1 -0.4850 0.8400 -0.0004 26 1 3.1459 -3.5047 -0.2741 27 1 1.8078 -4.2893 -1.1470 28 1 0.4994 -4.3979 0.9566 29 1 1.8376 -3.6133 1.8294 30 1 2.8239 -6.6864 2.8882 31 1 1.7451 -5.2955 3.2307 32 1 0.7957 -7.8963 2.9496 33 1 -0.1820 -6.4589 2.5042 34 1 -0.4430 -9.0614 0.5905 35 1 0.0661 -9.3009 -1.8076 36 1 1.6513 -7.7576 -2.8875 37 1 2.7228 -5.9744 -1.5833 38 1 0.0689 -1.2692 -1.6956 39 1 0.0903 -3.0292 -1.9608 40 1 -2.9554 -2.4624 0.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:54 Heat of formation + Delta-G solvation = -35.865359 kcal Electronic energy + Delta-G solvation = -23961.787103 eV Core-core repulsion = 20548.961471 eV Total energy + Delta-G solvation = -3412.825632 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.73134 -40.54558 -38.04478 -37.32500 -36.22939 -34.16487 -32.85100 -31.00842 -29.99607 -29.36139 -28.29068 -25.38859 -23.96599 -23.23843 -22.20847 -21.82552 -21.42890 -18.84359 -18.48430 -17.59665 -17.21871 -16.90986 -16.74056 -16.43428 -16.17094 -15.98908 -15.54031 -15.32939 -14.69675 -14.38666 -14.16756 -13.93154 -13.68022 -13.52013 -13.33637 -13.13352 -12.94365 -12.80694 -12.56259 -12.37368 -12.28006 -12.13430 -11.92092 -11.85680 -11.68833 -11.67716 -11.06305 -10.55797 -10.30033 -9.68004 -9.09812 -8.81707 -7.99356 -5.27187 0.42877 0.50258 1.48784 1.50779 1.58832 2.03436 2.44062 2.69329 2.78017 2.90506 3.23272 3.56844 3.64034 3.88905 4.06618 4.13918 4.22761 4.30140 4.38465 4.54467 4.57031 4.62409 4.69636 4.72712 4.74251 4.89406 4.97739 5.04249 5.12548 5.15624 5.18766 5.30169 5.51326 5.56653 5.61903 5.64052 5.90422 6.01430 6.14301 6.18408 6.40045 7.00010 7.59381 7.78874 8.12648 9.10551 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.005137 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.095360 B = 5449.019223 C = 5731.827482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.048 4.048 3 Si 0.971 3.029 4 H -0.280 1.280 5 H -0.303 1.303 6 H -0.274 1.274 7 C -0.258 4.258 8 H 0.080 0.920 9 N -0.579 5.579 10 C 0.151 3.849 11 C 0.067 3.933 12 N -0.504 5.504 13 C 0.046 3.954 14 C -0.102 4.102 15 C -0.161 4.161 16 C -0.098 4.098 17 C -0.135 4.135 18 C -0.106 4.106 19 C -0.129 4.129 20 C 0.073 3.927 21 C 0.187 3.813 22 C 0.481 3.519 23 O -0.550 6.550 24 O -0.536 6.536 25 H 0.251 0.749 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.020 0.980 29 H 0.046 0.954 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.139 0.861 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.055 -16.076 -2.560 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.243 4.243 3 Si 0.800 3.200 4 H -0.206 1.206 5 H -0.230 1.230 6 H -0.199 1.199 7 C -0.387 4.387 8 H 0.098 0.902 9 N -0.299 5.299 10 C 0.026 3.974 11 C -0.061 4.061 12 N -0.222 5.222 13 C -0.081 4.081 14 C -0.140 4.140 15 C -0.163 4.163 16 C -0.117 4.117 17 C -0.153 4.153 18 C -0.124 4.124 19 C -0.149 4.149 20 C -0.023 4.023 21 C 0.058 3.942 22 C 0.323 3.677 23 O -0.439 6.439 24 O -0.347 6.347 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.157 0.843 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.143 0.857 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 0.835 -15.780 -2.571 16.010 hybrid contribution -1.175 1.273 1.303 2.168 sum -0.340 -14.507 -1.268 14.566 Atomic orbital electron populations 1.69976 1.06341 1.25800 1.55541 1.25440 0.95926 1.01113 1.01800 0.85197 0.77819 0.79298 0.77663 1.20615 1.23011 1.19887 1.19579 0.96934 0.86206 1.36016 0.90222 1.44390 1.19483 1.03173 1.62812 1.21104 0.96783 0.85143 0.94418 1.22662 0.95473 0.87246 1.00680 1.60277 1.56036 1.02675 1.03229 1.23222 0.97674 0.97970 0.89204 1.21631 0.98728 1.00760 0.92922 1.21291 0.98463 0.99538 0.97029 1.20706 0.99431 0.97071 0.94471 1.21410 0.99095 1.00538 0.94296 1.21279 0.96295 0.93989 1.00824 1.20833 1.02150 1.00272 0.91619 1.19870 0.94776 0.93991 0.93636 1.20421 0.80805 1.02368 0.90624 1.25365 0.83007 0.68789 0.90552 1.90463 1.84928 1.47576 1.20902 1.84564 1.17951 1.85873 1.46356 0.93983 0.92261 0.91813 0.96176 0.93547 0.87947 0.90700 0.87389 0.91692 0.84341 0.82855 0.82992 0.85681 0.88592 0.90138 0.74399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.83 9.02 21.65 0.20 -52.63 16 2 C -0.05 -2.62 4.89 84.86 0.41 -2.20 16 3 Si 0.97 44.49 29.62 68.60 2.03 46.52 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.26 -13.84 9.70 84.03 0.82 -13.03 16 8 H 0.08 4.23 7.93 -2.91 -0.02 4.21 16 9 N -0.58 -28.24 2.09 -706.34 -1.48 -29.72 16 10 C 0.15 6.33 5.57 86.38 0.48 6.81 16 11 C 0.07 2.80 4.33 86.30 0.37 3.18 16 12 N -0.50 -17.58 5.06 -688.65 -3.48 -21.06 16 13 C 0.05 1.35 7.00 86.65 0.61 1.96 16 14 C -0.10 -2.72 6.97 30.67 0.21 -2.51 16 15 C -0.16 -4.61 6.23 -19.49 -0.12 -4.74 16 16 C -0.10 -2.30 10.03 22.21 0.22 -2.08 16 17 C -0.14 -2.78 10.06 22.30 0.22 -2.56 16 18 C -0.11 -2.36 10.02 22.21 0.22 -2.14 16 19 C -0.13 -3.66 8.55 22.47 0.19 -3.46 16 20 C 0.07 2.35 5.29 38.29 0.20 2.56 16 21 C 0.19 8.77 5.58 85.63 0.48 9.24 16 22 C 0.48 23.31 6.32 71.24 0.45 23.76 16 23 O -0.55 -30.03 14.42 21.95 0.32 -29.71 16 24 O -0.54 -21.89 13.42 -51.40 -0.69 -22.58 16 25 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 26 H 0.06 2.46 8.03 -2.39 -0.02 2.44 16 27 H 0.06 2.41 5.31 -2.39 -0.01 2.40 16 28 H 0.02 0.94 6.22 -2.39 -0.01 0.92 16 29 H 0.05 2.20 7.84 -2.39 -0.02 2.19 16 30 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.07 2.28 7.60 -2.39 -0.02 2.27 16 32 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 35 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.13 3.46 7.15 -2.91 -0.02 3.43 16 38 H 0.10 4.88 6.29 -2.39 -0.02 4.87 16 39 H 0.08 3.21 7.90 -2.39 -0.02 3.19 16 40 H 0.40 12.95 9.10 -74.06 -0.67 12.28 16 Total: -1.00 -68.05 325.76 2.05 -65.99 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.39 Total: 28.41 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 4.78 Total: 14.79 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -4.77 Total: -103.42 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -0.37 Total: -52.29 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.05 2.05 -65.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.128 kcal (2) G-P(sol) polarization free energy of solvation -68.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds