Wall clock time and date at job start Tue Mar 31 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21709 * 119.99976 * 0.02562 * 14 13 3 16 16 C 1.46604 * 120.00221 * 180.02562 * 14 13 3 17 17 C 1.38034 * 126.01253 * 179.69272 * 16 14 13 18 18 C 1.39392 * 107.43005 * 179.87624 * 17 16 14 19 19 C 1.37755 * 107.65390 * 0.38379 * 18 17 16 20 20 C 1.47914 * 125.81941 * 179.78099 * 19 18 17 21 21 N 1.34209 * 126.70194 * 179.66645 * 20 19 18 22 22 N 1.28986 * 107.25015 * 179.89201 * 21 20 19 23 23 N 1.28721 * 108.99318 * 0.37231 * 22 21 20 24 24 H 0.97001 * 125.31290 * 179.79214 * 23 22 21 25 25 N 1.28864 * 109.37000 * 359.76363 * 23 22 21 26 26 N 1.36391 * 108.36200 * 359.76181 * 19 18 17 27 27 H 0.96992 * 125.71343 * 179.97438 * 26 19 18 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 35 35 H 1.08002 * 126.28051 * 0.02562 * 17 16 14 36 36 H 1.08002 * 126.17191 * 180.14643 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3423 2.6318 0.4312 16 6 0.0475 3.3202 2.6196 17 6 -1.1589 3.9424 2.8703 18 6 -1.1148 4.4280 4.1762 19 6 0.1172 4.1045 4.7008 20 6 0.5916 4.4333 6.0627 21 7 1.7842 4.1220 6.5936 22 7 1.8017 4.5898 7.7955 23 7 0.6770 5.1676 8.0366 24 1 0.4354 5.5981 8.8715 25 7 -0.0776 5.0853 6.9952 26 7 0.8249 3.4290 3.7504 27 1 1.7253 3.0836 3.8539 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.8292 -0.0609 -2.9500 34 1 2.2719 2.1231 1.9979 35 1 -1.9861 4.0338 2.1819 36 1 -1.9027 4.9646 4.6837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604014822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:24 Heat of formation + Delta-G solvation = 125.302178 kcal Electronic energy + Delta-G solvation = -22221.175952 eV Core-core repulsion = 18744.091477 eV Total energy + Delta-G solvation = -3477.084475 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.70191 -41.16185 -38.62304 -35.13102 -34.60660 -33.61685 -32.53203 -31.31329 -30.82462 -29.17361 -27.00274 -24.90475 -24.59620 -23.12388 -21.91262 -20.65425 -19.90270 -19.67960 -19.43727 -18.44452 -17.41658 -16.46610 -15.68686 -15.25197 -14.95786 -14.53891 -14.30806 -13.93644 -13.85350 -13.39193 -12.92833 -12.80017 -12.57994 -12.25314 -12.05123 -11.66793 -11.55134 -11.43100 -11.26839 -11.13231 -11.02714 -10.84353 -10.36916 -10.21854 -9.67117 -9.31746 -9.09850 -9.08046 -8.53538 -8.16102 -7.86106 -6.15240 -4.25289 0.66558 1.09485 1.89240 2.09235 2.82329 2.92311 3.24537 3.30102 3.31086 3.55728 3.88744 3.95848 4.06034 4.34822 4.99033 5.16207 5.18430 5.25347 5.29492 5.46624 5.97301 6.09895 6.15850 6.38175 6.44680 6.59956 6.64198 6.82228 7.01773 7.15335 7.23955 7.28962 7.36280 7.58219 7.68392 7.85404 7.85890 8.13613 8.53779 8.71094 8.97115 9.41748 10.89990 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.003804 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.486986 B = 7358.474402 C = 8484.692024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.704 5.704 14 C 0.569 3.431 15 O -0.528 6.528 16 C 0.006 3.994 17 C -0.127 4.127 18 C -0.139 4.139 19 C 0.085 3.915 20 C 0.250 3.750 21 N -0.277 5.277 22 N -0.046 5.046 23 N -0.227 5.227 24 H 0.476 0.524 25 N -0.284 5.284 26 N -0.514 5.514 27 H 0.424 0.576 28 H 0.039 0.961 29 H 0.024 0.976 30 H 0.051 0.949 31 H 0.031 0.969 32 H 0.101 0.899 33 H 0.266 0.734 34 H 0.383 0.617 35 H 0.157 0.843 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.468 8.027 18.009 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.071 0.929 5 C -0.576 4.576 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.351 5.351 14 C 0.354 3.646 15 O -0.405 6.405 16 C -0.112 4.112 17 C -0.152 4.152 18 C -0.167 4.167 19 C -0.034 4.034 20 C -0.029 4.029 21 N -0.150 5.150 22 N -0.041 5.041 23 N -0.073 5.073 24 H 0.331 0.669 25 N -0.136 5.136 26 N -0.111 5.111 27 H 0.263 0.737 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.215 0.785 35 H 0.174 0.826 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.362 7.796 17.586 20.261 hybrid contribution 1.362 0.092 0.661 1.517 sum -4.999 7.888 18.247 20.498 Atomic orbital electron populations 1.21856 0.98216 0.98242 1.01319 1.21946 0.92731 0.99604 1.02410 1.18858 0.94354 0.89270 0.80514 0.92896 1.21169 0.90572 1.39440 1.06457 0.92154 1.24867 0.98644 0.94687 0.95312 1.69874 1.35284 1.37321 1.09301 0.86511 0.84769 0.78353 0.77495 1.20140 1.21084 1.20164 1.46503 1.14097 1.55729 1.18765 1.16995 0.83196 0.79218 0.85199 1.90839 1.51486 1.59949 1.38239 1.21243 0.93712 1.08172 0.88111 1.21226 0.96880 1.00823 0.96305 1.21075 0.95384 1.04998 0.95247 1.16805 0.93935 1.07365 0.85294 1.22514 0.88378 0.97483 0.94538 1.76198 1.18694 1.19659 1.00473 1.78885 1.06407 1.07787 1.11040 1.47734 1.08140 1.37301 1.14164 0.66918 1.74995 1.21703 1.21613 0.95335 1.41962 1.15747 1.42938 1.10460 0.73664 0.94238 0.95717 0.92998 0.95002 0.88127 0.92415 0.78513 0.82577 0.83081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.64 2.24 -69.08 -0.15 6.48 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.89 8.73 -34.44 -0.30 -14.19 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.23 11.29 55.43 0.63 -23.61 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 13 N -0.70 -14.12 5.02 -56.27 -0.28 -14.40 16 14 C 0.57 11.11 6.35 -12.89 -0.08 11.02 16 15 O -0.53 -11.94 14.00 5.18 0.07 -11.87 16 16 C 0.01 0.09 7.04 -81.95 -0.58 -0.48 16 17 C -0.13 -1.78 10.60 -39.23 -0.42 -2.19 16 18 C -0.14 -1.68 10.79 -39.33 -0.42 -2.10 16 19 C 0.08 1.08 7.12 -82.05 -0.58 0.49 16 20 C 0.25 3.02 8.21 -156.23 -1.28 1.74 16 21 N -0.28 -3.46 12.54 32.09 0.40 -3.06 16 22 N -0.05 -0.47 13.46 60.35 0.81 0.34 16 23 N -0.23 -1.64 7.89 60.35 0.48 -1.16 16 24 H 0.48 0.99 8.96 -340.33 -3.05 -2.06 16 25 N -0.28 -2.82 12.39 32.10 0.40 -2.43 16 26 N -0.51 -6.86 6.03 -5.80 -0.03 -6.90 16 27 H 0.42 5.07 8.16 -40.82 -0.33 4.74 16 28 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 1.20 7.84 -51.93 -0.41 0.80 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.38 6.65 7.64 -40.82 -0.31 6.34 16 35 H 0.16 2.05 8.06 -52.49 -0.42 1.63 16 36 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 314.07 15.07 4.73 4.73 Total: -1.00 -31.60 314.07 -7.89 -39.49 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.33 Total: 6.97 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -3.75 Total: -3.44 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 2.40 Total: -51.22 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.07 Total: -11.87 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.60 -7.89 -39.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.796 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds