Wall clock time and date at job start Tue Mar 31 2020 06:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21709 * 119.99976 * 0.02562 * 14 13 3 16 16 C 1.46604 * 120.00221 * 180.02562 * 14 13 3 17 17 C 1.38034 * 126.01253 * 179.69272 * 16 14 13 18 18 C 1.39392 * 107.43005 * 179.87624 * 17 16 14 19 19 C 1.37755 * 107.65390 * 0.38379 * 18 17 16 20 20 C 1.47914 * 125.81941 * 179.78099 * 19 18 17 21 21 N 1.34209 * 126.70194 * 179.66645 * 20 19 18 22 22 N 1.28986 * 107.25015 * 179.89201 * 21 20 19 23 23 N 1.28721 * 108.99318 * 0.37231 * 22 21 20 24 24 H 0.97001 * 125.31290 * 179.79214 * 23 22 21 25 25 N 1.28864 * 109.37000 * 359.76363 * 23 22 21 26 26 N 1.36391 * 108.36200 * 359.76181 * 19 18 17 27 27 H 0.96992 * 125.71343 * 179.97438 * 26 19 18 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 35 35 H 1.08002 * 126.28051 * 0.02562 * 17 16 14 36 36 H 1.08002 * 126.17191 * 180.14643 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3423 2.6318 0.4312 16 6 0.0475 3.3202 2.6196 17 6 -1.1589 3.9424 2.8703 18 6 -1.1148 4.4280 4.1762 19 6 0.1172 4.1045 4.7008 20 6 0.5916 4.4333 6.0627 21 7 1.7842 4.1220 6.5936 22 7 1.8017 4.5898 7.7955 23 7 0.6770 5.1676 8.0366 24 1 0.4354 5.5981 8.8715 25 7 -0.0776 5.0853 6.9952 26 7 0.8249 3.4290 3.7504 27 1 1.7253 3.0836 3.8539 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.8292 -0.0609 -2.9500 34 1 2.2719 2.1231 1.9979 35 1 -1.9861 4.0338 2.1819 36 1 -1.9027 4.9646 4.6837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604014822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:23 Heat of formation + Delta-G solvation = 101.572795 kcal Electronic energy + Delta-G solvation = -22222.204936 eV Core-core repulsion = 18744.091477 eV Total energy + Delta-G solvation = -3478.113458 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.50904 -42.29374 -40.20593 -36.94944 -35.42984 -34.54127 -34.30704 -32.95764 -32.08347 -30.37620 -28.83589 -25.87783 -25.65186 -24.84461 -23.21706 -21.91790 -21.18257 -21.03347 -20.59757 -19.74299 -18.21090 -18.15213 -17.26985 -16.90315 -16.44308 -16.02008 -15.43769 -15.24617 -14.95283 -14.88194 -14.57262 -13.99073 -13.84676 -13.63677 -13.45774 -13.16376 -13.13298 -12.91936 -12.65693 -12.48109 -12.26783 -12.19180 -12.06906 -12.00006 -11.57918 -11.07810 -10.96606 -10.52794 -10.11476 -9.76087 -9.12580 -8.16008 -6.33447 -0.22033 0.17195 0.96869 1.23030 1.45691 1.46879 1.54638 1.88399 1.93629 2.32730 2.45487 2.56342 2.64518 3.13647 3.19263 3.95741 4.06012 4.24397 4.32028 4.42129 4.51552 4.59613 4.77299 4.94810 5.07342 5.16849 5.27881 5.43841 5.51672 5.53642 5.58723 5.59493 5.75955 5.81554 5.91576 6.16143 6.19797 6.72331 6.89368 7.03988 7.29798 7.45583 8.89089 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.003804 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.486986 B = 7358.474402 C = 8484.692024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.280 3.720 4 H 0.005 0.995 5 C -0.552 4.552 6 H 0.070 0.930 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.702 5.702 14 C 0.572 3.428 15 O -0.567 6.567 16 C -0.024 4.024 17 C -0.118 4.118 18 C -0.134 4.134 19 C 0.098 3.902 20 C 0.234 3.766 21 N -0.301 5.301 22 N -0.051 5.051 23 N -0.193 5.193 24 H 0.497 0.503 25 N -0.273 5.273 26 N -0.509 5.509 27 H 0.429 0.571 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.029 0.971 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.266 0.734 34 H 0.397 0.603 35 H 0.161 0.839 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 8.961 20.829 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.023 0.977 5 C -0.590 4.590 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.350 5.350 14 C 0.359 3.641 15 O -0.447 6.447 16 C -0.142 4.142 17 C -0.144 4.144 18 C -0.161 4.161 19 C -0.021 4.021 20 C -0.046 4.046 21 N -0.174 5.174 22 N -0.046 5.046 23 N -0.045 5.045 24 H 0.357 0.643 25 N -0.127 5.127 26 N -0.106 5.106 27 H 0.269 0.731 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.231 0.769 35 H 0.179 0.821 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.195 8.743 20.464 23.100 hybrid contribution 1.244 -0.086 -0.030 1.248 sum -4.950 8.657 20.434 22.738 Atomic orbital electron populations 1.21697 0.96814 0.99315 1.00438 1.21796 0.93905 0.98970 1.01378 1.18429 0.93705 0.89274 0.80912 0.97667 1.21529 0.91385 1.39289 1.06835 0.91183 1.25716 1.03140 0.94310 0.94986 1.70024 1.37091 1.38089 1.09793 0.85461 0.79286 0.78399 0.77569 1.19041 1.21110 1.19777 1.46214 1.14990 1.55963 1.17865 1.17377 0.82230 0.78383 0.86105 1.90810 1.52404 1.61380 1.40074 1.20585 0.95133 1.10803 0.87632 1.21436 0.96167 0.99624 0.97206 1.21336 0.95811 1.04725 0.94262 1.17059 0.93870 1.05801 0.85412 1.22420 0.88784 0.98779 0.94639 1.76192 1.19250 1.20629 1.01337 1.78846 1.07166 1.08194 1.10396 1.47820 1.06922 1.35430 1.14363 0.64258 1.74961 1.21604 1.20705 0.95399 1.41868 1.15873 1.42948 1.09943 0.73141 0.93809 0.93519 0.95135 0.94182 0.90762 0.92503 0.76886 0.82122 0.80248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 8.51 71.98 0.61 -4.99 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.77 16 3 C 0.28 14.17 2.24 44.24 0.10 14.27 16 4 H 0.01 0.33 7.58 -2.39 -0.02 0.31 16 5 C -0.55 -28.92 8.73 25.60 0.22 -28.70 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 7 C 0.02 1.02 5.29 84.66 0.45 1.46 16 8 N -0.91 -51.59 11.29 21.45 0.24 -51.35 16 9 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 10 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 11 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 N -0.70 -28.78 5.02 -450.14 -2.26 -31.04 16 14 C 0.57 22.79 6.35 86.43 0.55 23.34 16 15 O -0.57 -26.61 14.00 -4.38 -0.06 -26.67 16 16 C -0.02 -0.75 7.04 40.36 0.28 -0.47 16 17 C -0.12 -3.16 10.60 22.50 0.24 -2.92 16 18 C -0.13 -2.90 10.79 22.43 0.24 -2.65 16 19 C 0.10 2.29 7.12 40.89 0.29 2.58 16 20 C 0.23 5.05 8.21 137.11 1.13 6.18 16 21 N -0.30 -6.92 12.54 -52.40 -0.66 -7.58 16 22 N -0.05 -0.92 13.46 37.02 0.50 -0.42 16 23 N -0.19 -2.16 7.89 37.02 0.29 -1.87 16 24 H 0.50 0.25 8.96 -347.51 -3.12 -2.87 16 25 N -0.27 -4.53 12.39 -52.35 -0.65 -5.18 16 26 N -0.51 -13.03 6.03 -172.28 -1.04 -14.07 16 27 H 0.43 9.89 8.16 -92.71 -0.76 9.14 16 28 H 0.04 1.89 5.64 -2.39 -0.01 1.88 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.03 1.46 7.84 -2.38 -0.02 1.44 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 4.05 5.95 -2.39 -0.01 4.03 16 33 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 34 H 0.40 13.85 7.64 -92.71 -0.71 13.14 16 35 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 36 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -69.43 314.07 -0.73 -70.16 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -3.40 Total: 21.83 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 4.28 Total: 2.33 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -3.57 Total: -111.51 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.06 Total: -26.67 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -69.43 -0.73 -70.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.728 kcal (2) G-P(sol) polarization free energy of solvation -69.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds