Wall clock time and date at job start Tue Mar 31 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21707 * 120.00025 * 359.97438 * 14 13 3 16 16 C 1.46606 * 119.99875 * 179.97438 * 14 13 3 17 17 C 1.38030 * 126.00931 * 179.68864 * 16 14 13 18 18 C 1.39395 * 107.42730 * 179.87714 * 17 16 14 19 19 C 1.37749 * 107.65399 * 0.38262 * 18 17 16 20 20 C 1.47918 * 125.81967 * 179.78016 * 19 18 17 21 21 N 1.34201 * 126.70586 * 179.65892 * 20 19 18 22 22 N 1.28985 * 107.25606 * 179.89394 * 21 20 19 23 23 N 1.28715 * 108.99095 * 0.38319 * 22 21 20 24 24 H 0.97003 * 125.31700 * 179.79488 * 23 22 21 25 25 N 1.28867 * 109.36874 * 359.75758 * 23 22 21 26 26 N 1.36382 * 108.36482 * 359.76254 * 19 18 17 27 27 H 0.96995 * 125.71748 * 179.97438 * 26 19 18 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 35 35 H 1.07995 * 126.28341 * 0.02562 * 17 16 14 36 36 H 1.08003 * 126.17301 * 180.14798 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3423 2.6318 -0.4312 16 6 0.0475 3.3202 -2.6196 17 6 -1.1634 3.9319 -2.8744 18 6 -1.1153 4.4265 -4.1768 19 6 0.1169 4.1036 -4.7011 20 6 0.5914 4.4328 -6.0628 21 7 1.7889 4.1331 -6.5893 22 7 1.8030 4.5927 -7.7944 23 7 0.6775 5.1684 -8.0363 24 1 0.4355 5.5981 -8.8716 25 7 -0.0780 5.0841 -6.9957 26 7 0.8249 3.4290 -3.7505 27 1 1.7253 3.0835 -3.8540 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 5.8770 0.4827 2.1133 34 1 2.2720 2.1231 -1.9978 35 1 -1.9943 4.0144 -2.1896 36 1 -1.9036 4.9625 -4.6846 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604014823.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:26 Heat of formation + Delta-G solvation = 133.619065 kcal Electronic energy + Delta-G solvation = -22295.296525 eV Core-core repulsion = 18818.572697 eV Total energy + Delta-G solvation = -3476.723828 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.72195 -41.24255 -38.84523 -35.40426 -34.62748 -33.64685 -32.53876 -31.75219 -31.02736 -29.28858 -27.49913 -24.93541 -24.66509 -22.85164 -22.11268 -20.84622 -20.03556 -19.75396 -19.68209 -18.56939 -17.43509 -16.69740 -15.74035 -15.72727 -15.07081 -14.56535 -14.43177 -14.00046 -13.93857 -13.48411 -13.14981 -12.95869 -12.72076 -12.38746 -12.28621 -11.96411 -11.80934 -11.67461 -11.44828 -11.19347 -11.09167 -10.94907 -10.65530 -9.95925 -9.70796 -9.36589 -9.27171 -9.14195 -8.79787 -8.30166 -8.03795 -6.23921 -4.27341 0.63604 1.05924 1.87159 2.01570 2.77271 2.87181 3.22124 3.34440 3.38829 3.52299 3.73351 3.79473 4.03323 4.29175 4.95982 5.09594 5.14040 5.18914 5.20285 5.37160 5.91308 5.94231 6.00559 6.07210 6.08408 6.15642 6.51866 6.62766 6.67273 6.76427 6.79140 6.93224 7.11625 7.20230 7.25907 7.44421 7.84090 8.06495 8.41686 8.68215 8.78605 9.35852 10.87983 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.024280 B = 0.003726 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.947115 B = 7512.565321 C = 8335.116563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.243 3.757 4 H 0.053 0.947 5 C -0.539 4.539 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.697 5.697 14 C 0.573 3.427 15 O -0.530 6.530 16 C 0.002 3.998 17 C -0.123 4.123 18 C -0.140 4.140 19 C 0.090 3.910 20 C 0.249 3.751 21 N -0.275 5.275 22 N -0.045 5.045 23 N -0.227 5.227 24 H 0.477 0.523 25 N -0.283 5.283 26 N -0.513 5.513 27 H 0.426 0.574 28 H 0.033 0.967 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.268 0.732 34 H 0.390 0.610 35 H 0.157 0.843 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.649 7.080 -16.910 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.140 3.860 4 H 0.071 0.929 5 C -0.576 4.576 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.183 1.183 13 N -0.344 5.344 14 C 0.358 3.642 15 O -0.407 6.407 16 C -0.116 4.116 17 C -0.149 4.149 18 C -0.168 4.168 19 C -0.029 4.029 20 C -0.031 4.031 21 N -0.149 5.149 22 N -0.040 5.040 23 N -0.073 5.073 24 H 0.331 0.669 25 N -0.136 5.136 26 N -0.110 5.110 27 H 0.265 0.735 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.223 0.777 35 H 0.174 0.826 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.383 6.914 -16.575 21.262 hybrid contribution 0.037 -0.375 -0.020 0.378 sum -11.346 6.538 -16.594 21.139 Atomic orbital electron populations 1.21892 0.96800 0.99230 1.02348 1.22297 0.94485 0.99766 1.01252 1.19218 0.95809 0.88585 0.82358 0.92900 1.21023 0.88465 1.40134 1.08015 0.90208 1.24829 0.94884 0.95059 0.97661 1.69863 1.08714 1.44289 1.29815 0.86898 0.80995 0.79977 0.80865 1.20191 1.22123 1.18326 1.46151 1.14345 1.55719 1.18207 1.17004 0.82924 0.78957 0.85343 1.90834 1.51564 1.60007 1.38299 1.21075 0.93707 1.08771 0.88053 1.21220 0.96655 1.00675 0.96357 1.21080 0.95425 1.04995 0.95318 1.16814 0.93885 1.06939 0.85282 1.22502 0.88300 0.97738 0.94565 1.76207 1.18484 1.19788 1.00403 1.78897 1.06346 1.07909 1.10847 1.47740 1.08153 1.37244 1.14164 0.66888 1.74989 1.21757 1.21380 0.95454 1.41965 1.15810 1.42914 1.10339 0.73524 0.94839 0.92880 0.92724 0.92607 0.92255 0.92213 0.77736 0.82552 0.83006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.51 37.16 0.32 -2.54 16 2 C -0.14 -3.02 5.11 -26.73 -0.14 -3.16 16 3 C 0.24 5.60 1.83 -69.08 -0.13 5.47 16 4 H 0.05 1.34 6.63 -51.93 -0.34 1.00 16 5 C -0.54 -14.24 9.31 -34.44 -0.32 -14.56 16 6 H 0.08 2.22 7.98 -52.48 -0.42 1.80 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 9 Si 0.88 21.39 24.41 -169.99 -4.15 17.24 16 10 H -0.28 -6.46 6.83 56.52 0.39 -6.08 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 13 N -0.70 -13.31 5.02 -56.26 -0.28 -13.60 16 14 C 0.57 10.51 6.35 -12.88 -0.08 10.42 16 15 O -0.53 -11.17 14.00 5.18 0.07 -11.10 16 16 C 0.00 0.03 7.04 -81.95 -0.58 -0.55 16 17 C -0.12 -1.63 10.60 -39.23 -0.42 -2.05 16 18 C -0.14 -1.61 10.79 -39.33 -0.42 -2.04 16 19 C 0.09 1.10 7.12 -82.06 -0.58 0.52 16 20 C 0.25 2.93 8.21 -156.24 -1.28 1.65 16 21 N -0.28 -3.41 12.54 32.08 0.40 -3.01 16 22 N -0.04 -0.45 13.46 60.35 0.81 0.36 16 23 N -0.23 -1.60 7.89 60.35 0.48 -1.12 16 24 H 0.48 0.92 8.96 -340.34 -3.05 -2.13 16 25 N -0.28 -2.74 12.39 32.10 0.40 -2.35 16 26 N -0.51 -6.58 6.03 -5.81 -0.04 -6.62 16 27 H 0.43 4.93 8.16 -40.82 -0.33 4.60 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 1.02 5.64 -51.93 -0.29 0.73 16 30 H 0.05 1.13 7.84 -51.93 -0.41 0.72 16 31 H 0.06 1.28 3.21 -51.93 -0.17 1.11 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.39 6.55 7.64 -40.82 -0.31 6.24 16 35 H 0.16 1.92 8.06 -52.49 -0.42 1.49 16 36 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 307.30 15.07 4.63 4.63 Total: -1.00 -32.84 307.30 -6.83 -39.67 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.20 Total: 5.92 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -3.73 Total: -4.71 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 2.55 Total: -51.64 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.15 Total: 17.24 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.84 -6.83 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014823.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.289 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds