Wall clock time and date at job start Tue Mar 31 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21707 * 120.00025 * 359.97438 * 14 13 3 16 16 C 1.46606 * 119.99875 * 179.97438 * 14 13 3 17 17 C 1.38030 * 126.00931 * 179.68864 * 16 14 13 18 18 C 1.39395 * 107.42730 * 179.87714 * 17 16 14 19 19 C 1.37749 * 107.65399 * 0.38262 * 18 17 16 20 20 C 1.47918 * 125.81967 * 179.78016 * 19 18 17 21 21 N 1.34201 * 126.70586 * 179.65892 * 20 19 18 22 22 N 1.28985 * 107.25606 * 179.89394 * 21 20 19 23 23 N 1.28715 * 108.99095 * 0.38319 * 22 21 20 24 24 H 0.97003 * 125.31700 * 179.79488 * 23 22 21 25 25 N 1.28867 * 109.36874 * 359.75758 * 23 22 21 26 26 N 1.36382 * 108.36482 * 359.76254 * 19 18 17 27 27 H 0.96995 * 125.71748 * 179.97438 * 26 19 18 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 35 35 H 1.07995 * 126.28341 * 0.02562 * 17 16 14 36 36 H 1.08003 * 126.17301 * 180.14798 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3423 2.6318 -0.4312 16 6 0.0475 3.3202 -2.6196 17 6 -1.1634 3.9319 -2.8744 18 6 -1.1153 4.4265 -4.1768 19 6 0.1169 4.1036 -4.7011 20 6 0.5914 4.4328 -6.0628 21 7 1.7889 4.1331 -6.5893 22 7 1.8030 4.5927 -7.7944 23 7 0.6775 5.1684 -8.0363 24 1 0.4355 5.5981 -8.8716 25 7 -0.0780 5.0841 -6.9957 26 7 0.8249 3.4290 -3.7505 27 1 1.7253 3.0835 -3.8540 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 5.8770 0.4827 2.1133 34 1 2.2720 2.1231 -1.9978 35 1 -1.9943 4.0144 -2.1896 36 1 -1.9036 4.9625 -4.6846 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604014823.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:26 Heat of formation + Delta-G solvation = 107.455439 kcal Electronic energy + Delta-G solvation = -22296.431065 eV Core-core repulsion = 18818.572697 eV Total energy + Delta-G solvation = -3477.858368 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.123 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.51493 -42.31869 -40.33033 -37.12097 -35.43600 -34.55804 -34.38457 -33.38129 -32.10810 -30.44079 -29.26693 -25.87374 -25.65038 -24.56892 -23.39006 -22.08716 -21.27688 -21.07911 -20.62795 -19.83099 -18.43642 -18.21679 -17.49938 -17.06752 -16.48988 -16.06115 -15.45770 -15.36094 -15.03946 -14.88272 -14.85991 -14.15508 -13.92451 -13.83822 -13.68901 -13.51828 -13.14749 -12.95492 -12.76156 -12.48855 -12.39002 -12.27191 -12.01325 -11.84689 -11.41611 -11.24948 -11.00241 -10.85533 -10.12124 -9.89445 -9.14906 -8.38076 -6.44449 -0.23145 0.16271 0.94867 1.22710 1.28946 1.37125 1.46916 1.87467 1.92881 2.26781 2.33943 2.40292 2.63886 2.98009 3.18731 3.87733 4.05635 4.24008 4.24880 4.30004 4.33893 4.40223 4.49014 4.83731 4.94396 5.02367 5.12244 5.16481 5.23956 5.36875 5.52239 5.54414 5.58040 5.59509 5.78924 6.10481 6.18825 6.56425 6.78113 7.03585 7.16167 7.32112 8.77026 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.024280 B = 0.003726 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.947115 B = 7512.565321 C = 8335.116563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.138 4.138 3 C 0.251 3.749 4 H 0.030 0.970 5 C -0.537 4.537 6 H 0.055 0.945 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.937 3.063 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.256 1.256 13 N -0.699 5.699 14 C 0.577 3.423 15 O -0.561 6.561 16 C -0.026 4.026 17 C -0.113 4.113 18 C -0.134 4.134 19 C 0.099 3.901 20 C 0.233 3.767 21 N -0.303 5.303 22 N -0.052 5.052 23 N -0.193 5.193 24 H 0.498 0.502 25 N -0.273 5.273 26 N -0.511 5.511 27 H 0.428 0.572 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.270 0.730 34 H 0.400 0.600 35 H 0.165 0.835 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.709 7.391 -18.655 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.177 4.177 3 C 0.146 3.854 4 H 0.047 0.953 5 C -0.575 4.575 6 H 0.073 0.927 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.764 3.236 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.180 1.180 13 N -0.347 5.347 14 C 0.365 3.635 15 O -0.440 6.440 16 C -0.144 4.144 17 C -0.140 4.140 18 C -0.162 4.162 19 C -0.021 4.021 20 C -0.047 4.047 21 N -0.175 5.175 22 N -0.047 5.047 23 N -0.045 5.045 24 H 0.357 0.643 25 N -0.126 5.126 26 N -0.108 5.108 27 H 0.268 0.732 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.234 0.766 35 H 0.182 0.818 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -13.442 7.231 -18.370 23.884 hybrid contribution 0.669 -0.318 0.283 0.793 sum -12.774 6.913 -18.087 23.197 Atomic orbital electron populations 1.21780 0.94976 1.00737 1.01785 1.22218 0.96053 0.98265 1.01130 1.18850 0.93287 0.89791 0.83423 0.95253 1.21273 0.90302 1.38821 1.07071 0.92711 1.25560 0.95757 0.95794 0.99882 1.69977 1.10364 1.46028 1.30854 0.86024 0.79451 0.79981 0.78156 1.18515 1.22166 1.18009 1.45946 1.15287 1.56144 1.17313 1.17310 0.81913 0.78110 0.86192 1.90806 1.52242 1.61171 1.39793 1.20534 0.95019 1.11203 0.87603 1.21446 0.95995 0.99400 0.97124 1.21351 0.95711 1.04624 0.94480 1.17077 0.93949 1.05689 0.85366 1.22458 0.88603 0.98914 0.94767 1.76199 1.19176 1.20864 1.01292 1.78854 1.07167 1.08386 1.10243 1.47826 1.06937 1.35371 1.14386 0.64254 1.74955 1.21635 1.20528 0.95498 1.41905 1.15917 1.42992 1.09983 0.73199 0.92212 0.92740 0.94015 0.93591 0.91429 0.92059 0.76592 0.81764 0.80244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 8.51 71.98 0.61 -4.50 16 2 C -0.14 -5.86 5.11 30.60 0.16 -5.71 16 3 C 0.25 11.64 1.83 44.25 0.08 11.73 16 4 H 0.03 1.52 6.63 -2.39 -0.02 1.50 16 5 C -0.54 -29.02 9.31 25.60 0.24 -28.79 16 6 H 0.05 3.16 7.98 -2.91 -0.02 3.14 16 7 C 0.03 1.68 5.45 84.66 0.46 2.14 16 8 N -0.93 -55.92 13.96 21.45 0.30 -55.62 16 9 Si 0.94 44.31 24.41 68.60 1.67 45.99 16 10 H -0.26 -11.54 6.83 99.48 0.68 -10.86 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 12 H -0.26 -11.88 6.53 99.48 0.65 -11.23 16 13 N -0.70 -26.93 5.02 -450.11 -2.26 -29.19 16 14 C 0.58 21.11 6.35 86.43 0.55 21.66 16 15 O -0.56 -23.63 14.00 -4.37 -0.06 -23.70 16 16 C -0.03 -0.77 7.04 40.36 0.28 -0.48 16 17 C -0.11 -2.79 10.60 22.50 0.24 -2.55 16 18 C -0.13 -2.73 10.79 22.43 0.24 -2.49 16 19 C 0.10 2.24 7.12 40.89 0.29 2.53 16 20 C 0.23 4.99 8.21 137.11 1.13 6.12 16 21 N -0.30 -7.05 12.54 -52.40 -0.66 -7.70 16 22 N -0.05 -0.94 13.46 37.02 0.50 -0.45 16 23 N -0.19 -2.17 7.89 37.02 0.29 -1.88 16 24 H 0.50 0.28 8.96 -347.51 -3.12 -2.83 16 25 N -0.27 -4.47 12.39 -52.36 -0.65 -5.12 16 26 N -0.51 -12.63 6.03 -172.29 -1.04 -13.67 16 27 H 0.43 9.80 8.16 -92.71 -0.76 9.04 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 2.03 5.64 -2.39 -0.01 2.01 16 30 H 0.04 1.67 7.84 -2.38 -0.02 1.65 16 31 H 0.05 2.04 3.21 -2.39 -0.01 2.03 16 32 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.40 13.67 7.64 -92.71 -0.71 12.96 16 35 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 36 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -70.98 307.30 -1.10 -72.08 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -3.48 Total: 19.60 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 4.28 Total: -0.34 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -3.51 Total: -113.63 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.06 Total: -23.70 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.67 Total: 45.99 kcal Total: -70.98 -1.10 -72.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014823.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.534 kcal (2) G-P(sol) polarization free energy of solvation -70.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds