Wall clock time and date at job start Tue Mar 31 2020 06:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47275 * 2 1 4 4 F 1.39901 * 109.47214 * 120.00350 * 2 1 3 5 5 C 1.53004 * 109.46858 * 240.00072 * 2 1 3 6 6 C 1.53007 * 109.46843 * 174.99776 * 5 2 1 7 7 N 1.46902 * 109.46666 * 179.97438 * 6 5 2 8 8 C 1.47486 * 110.99695 * 170.00221 * 7 6 5 9 9 C 1.53506 * 87.93221 * 138.70374 * 8 7 6 10 10 N 1.46500 * 114.17233 * 220.32962 * 9 8 7 11 11 C 1.34777 * 120.00032 * 205.00126 * 10 9 8 12 12 O 1.21287 * 119.99814 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00030 * 180.02562 * 11 10 9 14 14 S 1.81002 * 109.47255 * 180.02562 * 13 11 10 15 15 C 1.76197 * 99.99882 * 179.97438 * 14 13 11 16 16 H 1.07996 * 119.99869 * 0.02562 * 15 14 13 17 17 C 1.38801 * 119.99627 * 179.97438 * 15 14 13 18 18 N 1.31627 * 120.00210 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99798 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47208 * 60.00168 * 19 17 15 21 21 H 1.48500 * 109.47070 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47127 * 300.00073 * 19 17 15 23 23 C 1.47474 * 111.00271 * 265.97157 * 7 6 5 24 24 H 1.09001 * 109.47275 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47086 * 299.99941 * 1 2 3 26 26 H 1.09000 * 109.47090 * 59.99601 * 1 2 3 27 27 H 1.08998 * 109.47218 * 55.00537 * 5 2 1 28 28 H 1.08999 * 109.47000 * 294.99815 * 5 2 1 29 29 H 1.08998 * 109.46592 * 60.00377 * 6 5 2 30 30 H 1.08997 * 109.47468 * 300.00356 * 6 5 2 31 31 H 1.09000 * 113.47378 * 253.47583 * 8 7 6 32 32 H 1.08999 * 113.47621 * 23.93774 * 8 7 6 33 33 H 1.09007 * 114.17026 * 87.61940 * 9 8 7 34 34 H 0.97000 * 120.00191 * 25.00150 * 10 9 8 35 35 H 1.09004 * 109.46765 * 299.99800 * 13 11 10 36 36 H 1.08998 * 109.46854 * 59.99742 * 13 11 10 37 37 H 0.96998 * 120.00418 * 179.97438 * 18 17 15 38 38 H 1.09008 * 113.47654 * 336.07031 * 23 7 6 39 39 H 1.08996 * 113.47706 * 106.53139 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6596 1.1422 5 6 2.0399 -0.7213 -1.2493 6 6 3.5648 -0.6132 -1.3138 7 7 4.0544 -1.3063 -2.5129 8 6 5.4845 -1.0252 -2.7389 9 6 5.6604 -2.5055 -3.1054 10 7 6.8892 -3.1104 -2.5854 11 6 7.4274 -4.1804 -3.2034 12 8 6.8942 -4.6427 -4.1897 13 6 8.6911 -4.8029 -2.6681 14 16 9.1582 -6.2091 -3.7077 15 6 10.6226 -6.7300 -2.8778 16 1 10.9631 -6.2008 -2.0001 17 6 11.3379 -7.8211 -3.3515 18 7 10.9226 -8.4663 -4.4210 19 14 12.8901 -8.3738 -2.4713 20 1 12.5606 -8.7415 -1.0708 21 1 13.4632 -9.5516 -3.1710 22 1 13.8806 -7.2674 -2.4727 23 6 4.4343 -2.6968 -2.2017 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6054 -0.2617 -2.1370 28 1 1.7516 -1.7715 -1.2056 29 1 3.9994 -1.0728 -0.4261 30 1 3.8532 0.4370 -1.3574 31 1 5.6673 -0.3468 -3.5721 32 1 6.0184 -0.7356 -1.8338 33 1 5.4792 -2.7295 -4.1567 34 1 7.3155 -2.7408 -1.7964 35 1 9.4921 -4.0636 -2.6763 36 1 8.5232 -5.1454 -1.6471 37 1 11.4226 -9.2286 -4.7523 38 1 4.6879 -2.8534 -1.1531 39 1 3.7272 -3.4351 -2.5797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753370904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:33 Heat of formation + Delta-G solvation = -63.099348 kcal Electronic energy + Delta-G solvation = -20023.977658 eV Core-core repulsion = 16621.954718 eV Total energy + Delta-G solvation = -3402.022940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.98599 -40.69470 -38.62971 -35.13321 -33.56560 -32.43241 -30.89711 -29.16058 -26.58682 -26.17522 -25.46586 -22.89071 -21.54574 -20.45159 -20.34700 -17.82437 -17.15537 -16.74903 -16.50844 -16.04638 -15.59395 -15.22452 -15.15213 -14.80882 -14.53519 -14.31415 -13.67353 -13.44032 -13.22481 -13.01836 -12.87356 -12.71211 -12.57519 -12.40458 -12.01669 -11.80430 -11.39697 -11.15414 -11.05312 -11.04197 -10.95731 -10.81445 -10.72423 -9.83227 -9.58841 -9.21368 -9.06783 -8.91953 -8.25013 -6.50761 -6.21858 -3.92723 2.95411 3.00973 3.23333 3.26032 3.29143 3.51884 3.81115 4.11874 4.20086 4.26899 4.31549 4.38306 4.47116 4.64297 4.68021 4.91709 5.00905 5.07063 5.12133 5.13152 5.14756 5.25112 5.28408 5.42539 5.53476 5.58750 5.61366 5.69155 5.73533 5.86763 5.95352 5.98770 6.12050 6.54467 6.68983 7.58760 7.64604 8.34578 8.56325 9.23224 10.85476 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.002323 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.658931 B =12052.937018 C =12371.676702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.087 3.913 3 H 0.082 0.918 4 F -0.216 7.216 5 C -0.138 4.138 6 C 0.019 3.981 7 N -0.467 5.467 8 C -0.011 4.011 9 C 0.126 3.874 10 N -0.729 5.729 11 C 0.534 3.466 12 O -0.514 6.514 13 C -0.154 4.154 14 S -0.059 6.059 15 C -0.537 4.537 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.019 4.019 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.399 0.601 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.269 0.731 38 H 0.074 0.926 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.722 19.471 8.845 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.050 3.950 3 H 0.100 0.900 4 F -0.197 7.197 5 C -0.176 4.176 6 C -0.110 4.110 7 N -0.190 5.190 8 C -0.141 4.141 9 C 0.019 3.981 10 N -0.382 5.382 11 C 0.321 3.679 12 O -0.387 6.387 13 C -0.305 4.305 14 S 0.167 5.833 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.149 4.149 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.147 0.853 34 H 0.233 0.767 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.083 18.686 6.580 26.822 hybrid contribution 2.327 0.270 2.966 3.780 sum -15.756 18.955 9.546 26.432 Atomic orbital electron populations 1.22366 0.94171 1.03752 1.03437 1.21595 0.94966 0.96214 0.82223 0.90003 1.92824 1.90279 1.83409 1.53162 1.22094 0.95680 1.02371 0.97438 1.22684 0.95840 0.99891 0.92584 1.68822 1.15594 1.03912 1.30634 1.24278 0.89813 0.97982 1.02006 1.22478 0.83740 0.91640 1.00246 1.45964 1.27139 1.32720 1.32409 1.20372 0.85289 0.79119 0.83160 1.90708 1.62020 1.60831 1.25151 1.23544 0.96811 1.04743 1.05395 1.85405 1.31827 1.29319 1.36704 1.22824 1.11218 1.18297 1.16147 0.90973 1.24995 0.98121 0.95379 0.95097 1.70003 1.38968 1.19633 1.21649 0.86221 0.81651 0.78172 0.79433 1.19943 1.20805 1.19943 1.24547 0.97973 0.92557 0.99860 0.91304 0.91467 0.90555 0.89251 0.90527 0.92983 0.90734 0.88799 0.90910 0.85301 0.76732 0.89153 0.89185 0.92108 0.90777 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.91 9.65 37.16 0.36 -0.55 16 2 C 0.09 0.55 3.96 -26.73 -0.11 0.45 16 3 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 4 F -0.22 -2.05 16.76 2.25 0.04 -2.01 16 5 C -0.14 -0.96 5.31 -26.73 -0.14 -1.10 16 6 C 0.02 0.15 4.73 -3.82 -0.02 0.13 16 7 N -0.47 -4.40 6.33 -244.66 -1.55 -5.95 16 8 C -0.01 -0.10 7.45 -7.55 -0.06 -0.15 16 9 C 0.13 1.46 4.59 -67.72 -0.31 1.15 16 10 N -0.73 -9.38 5.39 -53.54 -0.29 -9.67 16 11 C 0.53 9.75 7.85 -10.98 -0.09 9.66 16 12 O -0.51 -11.49 15.46 5.55 0.09 -11.40 16 13 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 14 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 15 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 16 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 19 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 C -0.02 -0.20 7.52 -7.55 -0.06 -0.26 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.44 7.09 -51.93 -0.37 0.07 16 30 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 33 H 0.13 1.78 7.46 -51.93 -0.39 1.40 16 34 H 0.40 3.94 8.75 -40.82 -0.36 3.58 16 35 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 36 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.07 0.74 7.42 -51.92 -0.39 0.35 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 345.05 15.07 5.20 5.20 Total: -1.00 -33.94 345.05 -9.11 -43.05 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.10 Total: 0.10 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 0.00 Total: -6.45 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -1.10 Total: -41.01 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.94 -9.11 -43.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753370904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.049 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds