Wall clock time and date at job start Tue Mar 31 2020 06:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47275 * 2 1 4 4 F 1.39901 * 109.47214 * 120.00350 * 2 1 3 5 5 C 1.53004 * 109.46858 * 240.00072 * 2 1 3 6 6 C 1.53007 * 109.46843 * 174.99776 * 5 2 1 7 7 N 1.46902 * 109.46666 * 179.97438 * 6 5 2 8 8 C 1.47486 * 110.99695 * 170.00221 * 7 6 5 9 9 C 1.53506 * 87.93221 * 138.70374 * 8 7 6 10 10 N 1.46500 * 114.17233 * 220.32962 * 9 8 7 11 11 C 1.34777 * 120.00032 * 205.00126 * 10 9 8 12 12 O 1.21287 * 119.99814 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00030 * 180.02562 * 11 10 9 14 14 S 1.81002 * 109.47255 * 180.02562 * 13 11 10 15 15 C 1.76197 * 99.99882 * 179.97438 * 14 13 11 16 16 H 1.07996 * 119.99869 * 0.02562 * 15 14 13 17 17 C 1.38801 * 119.99627 * 179.97438 * 15 14 13 18 18 N 1.31627 * 120.00210 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99798 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47208 * 60.00168 * 19 17 15 21 21 H 1.48500 * 109.47070 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47127 * 300.00073 * 19 17 15 23 23 C 1.47474 * 111.00271 * 265.97157 * 7 6 5 24 24 H 1.09001 * 109.47275 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47086 * 299.99941 * 1 2 3 26 26 H 1.09000 * 109.47090 * 59.99601 * 1 2 3 27 27 H 1.08998 * 109.47218 * 55.00537 * 5 2 1 28 28 H 1.08999 * 109.47000 * 294.99815 * 5 2 1 29 29 H 1.08998 * 109.46592 * 60.00377 * 6 5 2 30 30 H 1.08997 * 109.47468 * 300.00356 * 6 5 2 31 31 H 1.09000 * 113.47378 * 253.47583 * 8 7 6 32 32 H 1.08999 * 113.47621 * 23.93774 * 8 7 6 33 33 H 1.09007 * 114.17026 * 87.61940 * 9 8 7 34 34 H 0.97000 * 120.00191 * 25.00150 * 10 9 8 35 35 H 1.09004 * 109.46765 * 299.99800 * 13 11 10 36 36 H 1.08998 * 109.46854 * 59.99742 * 13 11 10 37 37 H 0.96998 * 120.00418 * 179.97438 * 18 17 15 38 38 H 1.09008 * 113.47654 * 336.07031 * 23 7 6 39 39 H 1.08996 * 113.47706 * 106.53139 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6596 1.1422 5 6 2.0399 -0.7213 -1.2493 6 6 3.5648 -0.6132 -1.3138 7 7 4.0544 -1.3063 -2.5129 8 6 5.4845 -1.0252 -2.7389 9 6 5.6604 -2.5055 -3.1054 10 7 6.8892 -3.1104 -2.5854 11 6 7.4274 -4.1804 -3.2034 12 8 6.8942 -4.6427 -4.1897 13 6 8.6911 -4.8029 -2.6681 14 16 9.1582 -6.2091 -3.7077 15 6 10.6226 -6.7300 -2.8778 16 1 10.9631 -6.2008 -2.0001 17 6 11.3379 -7.8211 -3.3515 18 7 10.9226 -8.4663 -4.4210 19 14 12.8901 -8.3738 -2.4713 20 1 12.5606 -8.7415 -1.0708 21 1 13.4632 -9.5516 -3.1710 22 1 13.8806 -7.2674 -2.4727 23 6 4.4343 -2.6968 -2.2017 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6054 -0.2617 -2.1370 28 1 1.7516 -1.7715 -1.2056 29 1 3.9994 -1.0728 -0.4261 30 1 3.8532 0.4370 -1.3574 31 1 5.6673 -0.3468 -3.5721 32 1 6.0184 -0.7356 -1.8338 33 1 5.4792 -2.7295 -4.1567 34 1 7.3155 -2.7408 -1.7964 35 1 9.4921 -4.0636 -2.6763 36 1 8.5232 -5.1454 -1.6471 37 1 11.4226 -9.2286 -4.7523 38 1 4.6879 -2.8534 -1.1531 39 1 3.7272 -3.4351 -2.5797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753370904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:33 Heat of formation + Delta-G solvation = -88.572481 kcal Electronic energy + Delta-G solvation = -20025.082256 eV Core-core repulsion = 16621.954718 eV Total energy + Delta-G solvation = -3403.127538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.60031 -41.62758 -39.96827 -35.87986 -34.63886 -34.56220 -31.75334 -30.43584 -27.74099 -27.29324 -26.93508 -23.61392 -22.14482 -21.72301 -21.26985 -19.78456 -18.01403 -17.77305 -17.53043 -16.89594 -16.86896 -16.50717 -16.20603 -16.11685 -15.78146 -15.47457 -14.97950 -14.59598 -14.25162 -14.01358 -13.79841 -13.72390 -13.48883 -13.16851 -13.10690 -12.96472 -12.85883 -12.63566 -12.49229 -12.24354 -11.76317 -11.72272 -11.59094 -11.42306 -11.12519 -11.02171 -10.27827 -10.13257 -9.98756 -8.66481 -8.34068 -6.12325 1.26635 1.44317 1.46825 1.56398 1.56789 2.19081 2.28286 2.92483 2.99870 3.32642 3.40078 3.62313 3.73261 3.82406 3.89708 3.92941 3.98447 4.11207 4.25599 4.31085 4.32672 4.46209 4.51292 4.60332 4.66926 4.68371 4.80399 4.85545 4.92785 5.06801 5.20303 5.21462 5.35667 5.41998 5.43836 5.95140 6.20017 6.47571 7.06997 7.22227 8.74823 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.002323 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.658931 B =12052.937018 C =12371.676702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.083 3.917 3 H 0.102 0.898 4 F -0.235 7.235 5 C -0.134 4.134 6 C 0.019 3.981 7 N -0.474 5.474 8 C 0.005 3.995 9 C 0.112 3.888 10 N -0.701 5.701 11 C 0.537 3.463 12 O -0.563 6.563 13 C -0.130 4.130 14 S -0.152 6.152 15 C -0.547 4.547 16 H 0.084 0.916 17 C 0.012 3.988 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.262 1.262 23 C -0.014 4.014 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.418 0.582 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.271 0.729 38 H 0.084 0.916 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.304 21.662 10.917 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.046 3.954 3 H 0.120 0.880 4 F -0.216 7.216 5 C -0.172 4.172 6 C -0.110 4.110 7 N -0.197 5.197 8 C -0.125 4.125 9 C 0.006 3.994 10 N -0.355 5.355 11 C 0.323 3.677 12 O -0.441 6.441 13 C -0.281 4.281 14 S 0.075 5.925 15 C -0.695 4.695 16 H 0.102 0.898 17 C -0.193 4.193 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.187 1.187 21 H -0.205 1.205 22 H -0.186 1.186 23 C -0.144 4.144 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.255 0.745 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.683 20.934 8.697 28.750 hybrid contribution 2.078 -0.290 2.343 3.145 sum -15.606 20.644 11.040 28.135 Atomic orbital electron populations 1.22369 0.93267 1.03528 1.04445 1.21801 0.95767 0.96800 0.81004 0.88018 1.92787 1.90596 1.83940 1.54305 1.22058 0.95322 1.01643 0.98180 1.22742 0.96196 1.00547 0.91504 1.68835 1.16028 1.03185 1.31641 1.24246 0.89508 0.95476 1.03229 1.22565 0.83419 0.94117 0.99268 1.45664 1.27008 1.30693 1.32105 1.20120 0.84778 0.80050 0.82761 1.90700 1.63248 1.62689 1.27459 1.23381 0.98298 1.01997 1.04421 1.85598 1.32786 1.33890 1.40259 1.23174 1.11239 1.18678 1.16371 0.89835 1.26143 1.01949 0.95347 0.95823 1.70176 1.40746 1.20290 1.23540 0.84999 0.76816 0.77869 0.78280 1.18675 1.20463 1.18609 1.24472 0.96826 0.93250 0.99846 0.92169 0.91074 0.88963 0.88399 0.92087 0.93407 0.88980 0.87930 0.88603 0.87875 0.74472 0.86986 0.87149 0.92001 0.89837 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.65 71.98 0.69 -0.81 16 2 C 0.08 0.90 3.96 30.59 0.12 1.02 16 3 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 4 F -0.24 -4.16 16.76 44.97 0.75 -3.41 16 5 C -0.13 -1.63 5.31 30.60 0.16 -1.47 16 6 C 0.02 0.24 4.73 86.31 0.41 0.65 16 7 N -0.47 -8.00 6.33 -927.96 -5.88 -13.87 16 8 C 0.00 0.07 7.45 83.57 0.62 0.69 16 9 C 0.11 2.50 4.59 45.44 0.21 2.71 16 10 N -0.70 -16.85 5.39 -441.69 -2.38 -19.23 16 11 C 0.54 19.38 7.85 87.66 0.69 20.07 16 12 O -0.56 -25.95 15.46 -3.05 -0.05 -25.99 16 13 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 14 S -0.15 -8.44 20.57 -56.49 -1.16 -9.61 16 15 C -0.55 -31.11 9.50 67.95 0.65 -30.46 16 16 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 17 C 0.01 0.69 5.49 84.86 0.47 1.16 16 18 N -0.91 -56.06 13.22 21.65 0.29 -55.78 16 19 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 23 C -0.01 -0.27 7.52 83.57 0.63 0.36 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.69 7.09 -2.39 -0.02 0.67 16 30 H 0.09 0.91 8.08 -2.39 -0.02 0.89 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 1.03 7.90 -2.39 -0.02 1.01 16 33 H 0.10 2.91 7.46 -2.38 -0.02 2.89 16 34 H 0.42 6.94 8.75 -92.71 -0.81 6.12 16 35 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 36 H 0.11 3.83 8.14 -2.40 -0.02 3.82 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.08 1.50 7.42 -2.38 -0.02 1.49 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -76.16 345.05 -1.08 -77.24 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.23 Total: 15.83 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 5.08 Total: -10.68 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -7.97 Total: -88.88 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.05 Total: -25.99 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.75 Total: -3.41 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.61 kcal Total: -76.16 -1.08 -77.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753370904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.328 kcal (2) G-P(sol) polarization free energy of solvation -76.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds