Wall clock time and date at job start Tue Mar 31 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.99766 * 2 1 4 4 C 1.54325 * 109.88503 * 121.10164 * 2 1 3 5 5 C 1.55154 * 102.94046 * 141.60828 * 4 2 1 6 6 H 1.09004 * 111.00349 * 82.57183 * 5 4 2 7 7 N 1.46904 * 111.00265 * 206.38467 * 5 4 2 8 8 C 1.46904 * 110.99931 * 205.00327 * 7 5 4 9 9 C 1.52997 * 109.47097 * 179.97438 * 8 7 5 10 10 F 1.39901 * 109.47139 * 179.97438 * 9 8 7 11 11 C 1.55128 * 101.48987 * 324.33396 * 5 4 2 12 12 N 1.47023 * 109.87755 * 238.91043 * 2 1 3 13 13 C 1.34777 * 125.65065 * 61.60768 * 12 2 1 14 14 O 1.21274 * 120.00135 * 0.27097 * 13 12 2 15 15 C 1.50706 * 119.99766 * 179.97438 * 13 12 2 16 16 S 1.81003 * 109.46851 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99843 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00031 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99637 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00514 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99567 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46945 * 60.00520 * 21 19 17 23 23 H 1.48497 * 109.46774 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47349 * 299.99969 * 21 19 17 25 25 H 1.09005 * 109.46622 * 179.63844 * 1 2 3 26 26 H 1.08997 * 109.46962 * 299.63556 * 1 2 3 27 27 H 1.08991 * 109.47337 * 59.63847 * 1 2 3 28 28 H 1.08994 * 110.71826 * 259.97518 * 4 2 1 29 29 H 1.09005 * 110.71959 * 23.24711 * 4 2 1 30 30 H 1.00894 * 110.99750 * 81.05089 * 7 5 4 31 31 H 1.08995 * 109.47226 * 300.00107 * 8 7 5 32 32 H 1.08998 * 109.47019 * 59.99827 * 8 7 5 33 33 H 1.09004 * 109.46962 * 300.00185 * 9 8 7 34 34 H 1.08998 * 109.47314 * 60.00024 * 9 8 7 35 35 H 1.08999 * 110.49560 * 278.45217 * 11 5 4 36 36 H 1.08992 * 110.34389 * 156.06287 * 11 5 4 37 37 H 1.09000 * 109.47161 * 299.99737 * 15 13 12 38 38 H 1.09001 * 109.46740 * 59.99879 * 15 13 12 39 39 H 0.96995 * 120.00407 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 1.2426 5 6 3.2876 -1.5143 0.6921 6 1 4.1654 -0.8688 0.6601 7 7 3.5545 -2.7225 1.4840 8 6 4.9674 -3.1132 1.3883 9 6 5.2062 -4.3720 2.2245 10 9 6.5516 -4.7444 2.1329 11 6 2.8099 -1.8824 -0.7371 12 7 2.0299 -0.7140 -1.1840 13 6 1.8073 -0.3618 -2.4658 14 8 1.1473 0.6239 -2.7180 15 6 2.3840 -1.1892 -3.5856 16 16 1.9117 -0.4651 -5.1758 17 6 2.6957 -1.5990 -6.2732 18 1 3.2575 -2.4323 -5.8778 19 6 2.5921 -1.4205 -7.6458 20 7 1.9086 -0.4040 -8.1277 21 14 3.4239 -2.6223 -8.8092 22 1 2.8817 -3.9861 -8.5828 23 1 3.1632 -2.2132 -10.2127 24 1 4.8873 -2.6231 -8.5570 25 1 -0.3633 -1.0277 -0.0065 26 1 -0.3633 0.5082 0.8932 27 1 -0.3633 0.5194 -0.8866 28 1 2.3530 -0.0462 2.0200 29 1 1.3052 -1.4461 1.6181 30 1 2.9501 -3.4799 1.2028 31 1 5.2188 -3.3151 0.3471 32 1 5.5943 -2.3041 1.7631 33 1 4.9548 -4.1696 3.2657 34 1 4.5793 -5.1813 1.8501 35 1 2.1802 -2.7717 -0.7118 36 1 3.6655 -2.0411 -1.3935 37 1 3.4707 -1.2064 -3.5022 38 1 1.9986 -2.2067 -3.5212 39 1 1.8366 -0.2791 -9.0868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755669428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:06 Heat of formation + Delta-G solvation = -89.303279 kcal Electronic energy + Delta-G solvation = -20767.909341 eV Core-core repulsion = 17364.750113 eV Total energy + Delta-G solvation = -3403.159228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.97761 -40.18721 -37.87066 -35.68364 -32.45466 -32.18839 -31.19196 -28.78408 -27.69647 -25.87049 -25.50126 -22.96556 -22.21275 -21.14504 -19.01098 -17.69897 -17.24604 -16.69639 -16.60751 -15.94787 -15.86161 -14.99537 -14.82840 -14.60533 -14.54648 -14.22640 -13.88359 -13.51762 -13.11287 -13.06928 -12.88113 -12.63850 -12.49917 -12.06924 -11.95760 -11.75968 -11.43616 -11.22361 -11.08782 -11.06198 -11.03620 -10.80932 -10.78101 -9.85128 -9.44000 -9.08292 -8.97035 -8.55047 -8.26909 -6.53134 -6.23816 -3.94947 2.82386 3.02739 3.21589 3.21911 3.26948 3.41312 3.64703 4.17668 4.17922 4.28376 4.38520 4.46815 4.65600 4.70729 4.93590 4.99639 5.03429 5.07168 5.11159 5.18417 5.32134 5.38638 5.39670 5.53028 5.58818 5.61497 5.68273 5.75400 5.84778 6.05953 6.08447 6.26825 6.43379 6.52358 6.78442 7.56456 7.63753 8.32371 8.53568 9.21197 10.83566 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.003801 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.389125 B = 7365.358742 C = 9204.498694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 H 0.075 0.925 4 C -0.113 4.113 5 C 0.076 3.924 6 H 0.097 0.903 7 N -0.673 5.673 8 C 0.023 3.977 9 C 0.063 3.937 10 F -0.216 7.216 11 C 0.075 3.925 12 N -0.620 5.620 13 C 0.549 3.451 14 O -0.511 6.511 15 C -0.147 4.147 16 S -0.059 6.059 17 C -0.537 4.537 18 H 0.071 0.929 19 C 0.075 3.925 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.274 1.274 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.346 0.654 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 -6.127 22.350 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.030 3.970 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.035 4.035 6 H 0.115 0.885 7 N -0.303 5.303 8 C -0.107 4.107 9 C 0.008 3.992 10 F -0.197 7.197 11 C -0.051 4.051 12 N -0.358 5.358 13 C 0.337 3.663 14 O -0.384 6.384 15 C -0.298 4.298 16 S 0.168 5.832 17 C -0.685 4.685 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.199 1.199 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.166 0.834 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.399 -4.201 22.307 22.825 hybrid contribution 1.417 -2.392 -1.432 3.128 sum 3.816 -6.594 20.875 22.221 Atomic orbital electron populations 1.22132 0.94671 1.02218 1.03006 1.21547 0.94883 0.96487 0.84053 0.90664 1.22726 0.96856 0.99183 0.96430 1.22841 0.98946 0.92030 0.89675 0.88533 1.60421 1.04436 1.07600 1.57880 1.22586 0.90624 0.98016 0.99471 1.21877 0.78030 0.96934 1.02386 1.92780 1.36319 1.92806 1.97814 1.23028 0.95817 0.89668 0.96546 1.48491 1.54033 1.28251 1.05014 1.20012 0.79776 0.85089 0.81386 1.90695 1.38594 1.26689 1.82471 1.23520 1.03511 1.02601 1.00161 1.85393 1.69549 1.37761 0.90491 1.22813 1.38389 1.14192 0.93130 0.91051 1.24985 0.95202 0.95973 0.97319 1.70001 1.38402 1.28064 1.13773 0.86229 0.79651 0.80531 0.79128 1.19931 1.20747 1.19922 0.92664 0.91932 0.90832 0.89791 0.89912 0.83443 0.93442 0.89547 0.89786 0.90817 0.91406 0.90496 0.89501 0.89508 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.10 37.16 0.34 -1.58 16 2 C 0.13 1.56 3.46 -66.95 -0.23 1.33 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.11 -0.92 6.17 -24.90 -0.15 -1.07 16 5 C 0.08 0.60 3.39 -65.45 -0.22 0.38 16 6 H 0.10 0.80 7.83 -51.93 -0.41 0.39 16 7 N -0.67 -4.28 6.41 -104.34 -0.67 -4.95 16 8 C 0.02 0.15 6.00 -3.82 -0.02 0.12 16 9 C 0.06 0.38 7.81 37.16 0.29 0.67 16 10 F -0.22 -1.98 17.36 2.25 0.04 -1.94 16 11 C 0.08 0.77 6.29 -2.41 -0.02 0.76 16 12 N -0.62 -8.70 3.06 -162.88 -0.50 -9.20 16 13 C 0.55 10.50 7.66 -10.98 -0.08 10.42 16 14 O -0.51 -11.65 14.91 5.56 0.08 -11.57 16 15 C -0.15 -3.02 5.16 36.01 0.19 -2.84 16 16 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 17 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 18 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 21 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.12 6.89 -51.93 -0.36 0.76 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.62 7.85 -51.93 -0.41 0.22 16 30 H 0.35 1.87 8.19 -39.29 -0.32 1.54 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.63 7.76 -51.93 -0.40 0.23 16 36 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 37 H 0.09 1.66 7.85 -51.92 -0.41 1.26 16 38 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 339.63 15.07 5.12 5.12 Total: -1.00 -33.88 339.63 -8.19 -42.06 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.04 Total: -1.83 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 0.28 Total: -4.81 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: -0.43 Total: -39.57 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.88 -8.19 -42.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755669428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.240 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds