Wall clock time and date at job start Tue Mar 31 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.99766 * 2 1 4 4 C 1.54325 * 109.88503 * 121.10164 * 2 1 3 5 5 C 1.55154 * 102.94046 * 141.60828 * 4 2 1 6 6 H 1.09004 * 111.00349 * 82.57183 * 5 4 2 7 7 N 1.46904 * 111.00265 * 206.38467 * 5 4 2 8 8 C 1.46904 * 110.99931 * 205.00327 * 7 5 4 9 9 C 1.52997 * 109.47097 * 179.97438 * 8 7 5 10 10 F 1.39901 * 109.47139 * 179.97438 * 9 8 7 11 11 C 1.55128 * 101.48987 * 324.33396 * 5 4 2 12 12 N 1.47023 * 109.87755 * 238.91043 * 2 1 3 13 13 C 1.34777 * 125.65065 * 61.60768 * 12 2 1 14 14 O 1.21274 * 120.00135 * 0.27097 * 13 12 2 15 15 C 1.50706 * 119.99766 * 179.97438 * 13 12 2 16 16 S 1.81003 * 109.46851 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99843 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00031 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99637 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00514 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99567 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46945 * 60.00520 * 21 19 17 23 23 H 1.48497 * 109.46774 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47349 * 299.99969 * 21 19 17 25 25 H 1.09005 * 109.46622 * 179.63844 * 1 2 3 26 26 H 1.08997 * 109.46962 * 299.63556 * 1 2 3 27 27 H 1.08991 * 109.47337 * 59.63847 * 1 2 3 28 28 H 1.08994 * 110.71826 * 259.97518 * 4 2 1 29 29 H 1.09005 * 110.71959 * 23.24711 * 4 2 1 30 30 H 1.00894 * 110.99750 * 81.05089 * 7 5 4 31 31 H 1.08995 * 109.47226 * 300.00107 * 8 7 5 32 32 H 1.08998 * 109.47019 * 59.99827 * 8 7 5 33 33 H 1.09004 * 109.46962 * 300.00185 * 9 8 7 34 34 H 1.08998 * 109.47314 * 60.00024 * 9 8 7 35 35 H 1.08999 * 110.49560 * 278.45217 * 11 5 4 36 36 H 1.08992 * 110.34389 * 156.06287 * 11 5 4 37 37 H 1.09000 * 109.47161 * 299.99737 * 15 13 12 38 38 H 1.09001 * 109.46740 * 59.99879 * 15 13 12 39 39 H 0.96995 * 120.00407 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7496 1.2426 5 6 3.2876 -1.5143 0.6921 6 1 4.1654 -0.8688 0.6601 7 7 3.5545 -2.7225 1.4840 8 6 4.9674 -3.1132 1.3883 9 6 5.2062 -4.3720 2.2245 10 9 6.5516 -4.7444 2.1329 11 6 2.8099 -1.8824 -0.7371 12 7 2.0299 -0.7140 -1.1840 13 6 1.8073 -0.3618 -2.4658 14 8 1.1473 0.6239 -2.7180 15 6 2.3840 -1.1892 -3.5856 16 16 1.9117 -0.4651 -5.1758 17 6 2.6957 -1.5990 -6.2732 18 1 3.2575 -2.4323 -5.8778 19 6 2.5921 -1.4205 -7.6458 20 7 1.9086 -0.4040 -8.1277 21 14 3.4239 -2.6223 -8.8092 22 1 2.8817 -3.9861 -8.5828 23 1 3.1632 -2.2132 -10.2127 24 1 4.8873 -2.6231 -8.5570 25 1 -0.3633 -1.0277 -0.0065 26 1 -0.3633 0.5082 0.8932 27 1 -0.3633 0.5194 -0.8866 28 1 2.3530 -0.0462 2.0200 29 1 1.3052 -1.4461 1.6181 30 1 2.9501 -3.4799 1.2028 31 1 5.2188 -3.3151 0.3471 32 1 5.5943 -2.3041 1.7631 33 1 4.9548 -4.1696 3.2657 34 1 4.5793 -5.1813 1.8501 35 1 2.1802 -2.7717 -0.7118 36 1 3.6655 -2.0411 -1.3935 37 1 3.4707 -1.2064 -3.5022 38 1 1.9986 -2.2067 -3.5212 39 1 1.8366 -0.2791 -9.0868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755669428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:06 Heat of formation + Delta-G solvation = -113.127276 kcal Electronic energy + Delta-G solvation = -20768.942427 eV Core-core repulsion = 17364.750113 eV Total energy + Delta-G solvation = -3404.192314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.56624 -41.31194 -39.02995 -36.49076 -34.61727 -33.37471 -31.92463 -30.27673 -28.35246 -27.69143 -26.76771 -23.65009 -23.09662 -21.91872 -20.39087 -19.52964 -18.27472 -17.65630 -17.27087 -16.91188 -16.78094 -16.70040 -16.32701 -15.95764 -15.43015 -15.24915 -15.00891 -14.59892 -14.31794 -14.18353 -13.95385 -13.71860 -13.54029 -13.22635 -13.18523 -12.98497 -12.88885 -12.62488 -12.57269 -12.11654 -11.84723 -11.77780 -11.69037 -11.56838 -11.15707 -10.93463 -10.32791 -9.78776 -9.51954 -8.71522 -8.37322 -6.16628 1.20702 1.41996 1.42390 1.52777 1.53864 2.01780 2.24692 2.84900 2.96714 3.23055 3.46270 3.54795 3.83813 3.88997 3.96943 4.02523 4.11783 4.19535 4.21828 4.28665 4.36651 4.41825 4.51934 4.57212 4.66882 4.71124 4.80430 4.91350 5.01353 5.06428 5.17316 5.30733 5.37828 5.48151 5.84732 6.16264 6.30122 6.37668 7.03457 7.10349 8.71785 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.003801 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.389125 B = 7365.358742 C = 9204.498694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.126 3.874 3 H 0.064 0.936 4 C -0.098 4.098 5 C 0.088 3.912 6 H 0.096 0.904 7 N -0.662 5.662 8 C 0.025 3.975 9 C 0.061 3.939 10 F -0.235 7.235 11 C 0.066 3.934 12 N -0.610 5.610 13 C 0.545 3.455 14 O -0.560 6.560 15 C -0.120 4.120 16 S -0.148 6.148 17 C -0.549 4.549 18 H 0.081 0.919 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.262 1.262 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.031 0.969 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.356 0.644 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 -8.369 24.337 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 H 0.083 0.917 4 C -0.136 4.136 5 C -0.023 4.023 6 H 0.114 0.886 7 N -0.293 5.293 8 C -0.105 4.105 9 C 0.006 3.994 10 F -0.217 7.217 11 C -0.059 4.059 12 N -0.346 5.346 13 C 0.333 3.667 14 O -0.438 6.438 15 C -0.271 4.271 16 S 0.079 5.921 17 C -0.697 4.697 18 H 0.100 0.900 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.202 1.202 24 H -0.187 1.187 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.051 0.949 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.176 0.824 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.486 -6.481 24.359 25.447 hybrid contribution 1.073 -1.701 -1.891 2.761 sum 4.560 -8.182 22.468 24.342 Atomic orbital electron populations 1.22081 0.94793 1.02323 1.02333 1.21813 0.94880 0.96508 0.84464 0.91738 1.22669 0.96923 0.99347 0.94669 1.22708 0.98811 0.92714 0.88080 0.88597 1.60402 1.04599 1.07431 1.56917 1.22547 0.90482 0.98218 0.99220 1.22025 0.77033 0.97184 1.03161 1.92742 1.38029 1.92986 1.97916 1.23391 0.95652 0.88754 0.98059 1.48419 1.53071 1.29146 1.03937 1.19737 0.79643 0.84452 0.82829 1.90678 1.40911 1.28644 1.83526 1.23313 1.04383 1.02823 0.96631 1.85570 1.70744 1.40103 0.95653 1.23152 1.38481 1.14320 0.93735 0.90046 1.26131 0.95666 0.97921 0.99257 1.70170 1.40004 1.30255 1.14270 0.85006 0.78757 0.77946 0.76306 1.18581 1.20249 1.18652 0.92057 0.89199 0.94936 0.87921 0.88467 0.82383 0.94065 0.89861 0.88562 0.89202 0.89635 0.90621 0.87976 0.87903 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.10 71.98 0.66 -2.92 16 2 C 0.13 2.75 3.46 45.34 0.16 2.91 16 3 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 4 C -0.10 -1.24 6.17 31.78 0.20 -1.04 16 5 C 0.09 1.12 3.39 46.38 0.16 1.28 16 6 H 0.10 1.31 7.83 -2.39 -0.02 1.29 16 7 N -0.66 -6.01 6.41 -484.02 -3.10 -9.12 16 8 C 0.03 0.25 6.00 86.30 0.52 0.77 16 9 C 0.06 0.56 7.81 71.98 0.56 1.12 16 10 F -0.24 -3.90 17.36 44.97 0.78 -3.12 16 11 C 0.07 1.18 6.29 86.93 0.55 1.73 16 12 N -0.61 -16.49 3.06 -787.62 -2.41 -18.90 16 13 C 0.55 21.13 7.66 87.66 0.67 21.81 16 14 O -0.56 -26.69 14.91 -3.01 -0.04 -26.74 16 15 C -0.12 -4.95 5.16 71.24 0.37 -4.58 16 16 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 17 C -0.55 -31.63 9.50 67.96 0.65 -30.99 16 18 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 19 C 0.02 0.87 5.49 84.86 0.47 1.34 16 20 N -0.91 -56.22 13.22 21.65 0.29 -55.94 16 21 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 25 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.03 1.01 6.89 -2.39 -0.02 0.99 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.10 1.03 7.85 -2.38 -0.02 1.01 16 30 H 0.36 2.38 8.19 -89.70 -0.73 1.64 16 31 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 33 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 0.54 8.14 -2.39 -0.02 0.53 16 35 H 0.09 1.30 7.76 -2.39 -0.02 1.28 16 36 H 0.08 1.42 7.48 -2.39 -0.02 1.40 16 37 H 0.10 3.85 7.85 -2.39 -0.02 3.84 16 38 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 39 H 0.27 15.59 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -76.93 339.63 1.62 -75.31 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.31 Total: 10.99 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 4.94 Total: -8.58 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -5.23 Total: -83.96 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.04 Total: -26.74 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.78 Total: -3.12 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -76.93 1.62 -75.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755669428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.821 kcal (2) G-P(sol) polarization free energy of solvation -76.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds