Wall clock time and date at job start Tue Mar 31 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.32604 * 2 1 4 4 C 1.54918 * 110.36626 * 237.64894 * 2 1 3 5 5 C 1.55149 * 101.58249 * 204.15111 * 4 2 1 6 6 H 1.09001 * 110.72168 * 276.95859 * 5 4 2 7 7 N 1.46899 * 110.72291 * 153.86372 * 5 4 2 8 8 C 1.46898 * 111.00105 * 155.00035 * 7 5 4 9 9 C 1.53008 * 109.47048 * 180.02562 * 8 7 5 10 10 F 1.39895 * 109.47056 * 179.97438 * 9 8 7 11 11 C 1.54339 * 103.02101 * 35.30750 * 5 4 2 12 12 N 1.47017 * 107.26385 * 338.14015 * 11 5 4 13 13 C 1.34776 * 125.65013 * 178.85116 * 12 11 5 14 14 O 1.21280 * 120.00458 * 179.69084 * 13 12 11 15 15 C 1.50702 * 119.99564 * 359.69320 * 13 12 11 16 16 S 1.81008 * 109.46925 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99767 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00286 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99642 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00322 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99881 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 239.99700 * 21 19 17 24 24 H 1.48500 * 109.47454 * 119.99693 * 21 19 17 25 25 H 1.08996 * 109.47250 * 299.21176 * 1 2 3 26 26 H 1.08999 * 109.47138 * 59.21801 * 1 2 3 27 27 H 1.09007 * 109.47207 * 179.21475 * 1 2 3 28 28 H 1.09002 * 111.00305 * 322.22877 * 4 2 1 29 29 H 1.08999 * 111.00238 * 86.03889 * 4 2 1 30 30 H 1.00905 * 110.99884 * 31.04720 * 7 5 4 31 31 H 1.09000 * 109.47076 * 299.99496 * 8 7 5 32 32 H 1.08993 * 109.47427 * 60.00144 * 8 7 5 33 33 H 1.08997 * 109.46684 * 300.00039 * 9 8 7 34 34 H 1.09004 * 109.46750 * 59.99977 * 9 8 7 35 35 H 1.08999 * 109.99047 * 218.66441 * 11 5 4 36 36 H 1.09000 * 109.77745 * 97.49745 * 11 5 4 37 37 H 1.08998 * 109.47573 * 60.00437 * 15 13 12 38 38 H 1.09000 * 109.46955 * 299.99406 * 15 13 12 39 39 H 0.97004 * 120.00251 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0691 -0.7772 -1.2269 5 6 3.4777 -1.2005 -0.7331 6 1 4.1951 -0.3922 -0.8748 7 7 3.9262 -2.4176 -1.4226 8 6 5.3926 -2.5026 -1.4406 9 6 5.8206 -3.7800 -2.1659 10 9 7.2171 -3.8606 -2.1835 11 6 3.2525 -1.4718 0.7695 12 7 2.0431 -0.7373 1.1689 13 6 1.4973 -0.7340 2.4012 14 8 0.4967 -0.0842 2.6195 15 6 2.1302 -1.5376 3.5078 16 16 1.1713 -1.3296 5.0289 17 6 2.1069 -2.3471 6.1218 18 1 2.9845 -2.8628 5.7610 19 6 1.7159 -2.4856 7.4463 20 7 0.6466 -1.8565 7.8862 21 14 2.7080 -3.5636 8.6052 22 1 3.8554 -4.1549 7.8708 23 1 1.8442 -4.6510 9.1312 24 1 3.2130 -2.7424 9.7347 25 1 -0.3633 0.5015 0.8969 26 1 -0.3633 0.5259 -0.8829 27 1 -0.3634 -1.0276 -0.0141 28 1 1.4510 -1.6495 -1.4393 29 1 2.1392 -0.1286 -2.1002 30 1 3.5498 -2.4629 -2.3578 31 1 5.8004 -1.6359 -1.9608 32 1 5.7680 -2.5221 -0.4175 33 1 5.4128 -4.6469 -1.6460 34 1 5.4452 -3.7600 -3.1890 35 1 4.1081 -1.1177 1.3444 36 1 3.1090 -2.5397 0.9340 37 1 3.1506 -1.1908 3.6709 38 1 2.1447 -2.5913 3.2291 39 1 0.1315 -1.2964 7.2845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755669429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:08 Heat of formation + Delta-G solvation = -91.042330 kcal Electronic energy + Delta-G solvation = -20811.751016 eV Core-core repulsion = 17408.516377 eV Total energy + Delta-G solvation = -3403.234638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.00061 -40.22191 -37.91731 -35.69298 -32.51797 -32.29996 -31.22123 -28.86371 -27.74315 -25.92748 -24.82861 -23.06340 -22.07330 -21.13875 -19.03390 -18.13088 -17.22940 -16.83917 -16.56408 -16.22508 -15.85216 -15.24274 -14.90378 -14.54039 -14.45106 -13.95921 -13.85455 -13.70587 -13.26781 -13.06440 -12.84066 -12.40218 -12.27848 -12.16825 -11.97034 -11.75036 -11.61491 -11.52454 -11.27216 -11.16065 -10.91392 -10.89034 -10.19695 -9.56867 -9.30774 -9.03403 -8.99941 -8.55155 -8.20703 -6.65838 -6.61325 -3.98884 2.76758 2.97825 3.28358 3.37633 3.41404 3.52965 3.59031 4.03596 4.22927 4.28279 4.31726 4.39935 4.63429 4.72833 4.89057 4.94494 4.97607 5.09534 5.20330 5.23467 5.27370 5.36031 5.38983 5.49649 5.53103 5.57622 5.66995 5.69129 5.81564 6.04152 6.07042 6.25782 6.43559 6.59746 6.76273 7.62008 7.94771 8.49493 8.51503 9.28222 10.82852 Molecular weight = 290.12amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.003810 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.183137 B = 7347.971055 C = 9195.121598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.139 3.861 3 H 0.073 0.927 4 C -0.132 4.132 5 C 0.077 3.923 6 H 0.066 0.934 7 N -0.676 5.676 8 C 0.025 3.975 9 C 0.063 3.937 10 F -0.216 7.216 11 C 0.110 3.890 12 N -0.621 5.621 13 C 0.550 3.450 14 O -0.513 6.513 15 C -0.124 4.124 16 S -0.117 6.117 17 C -0.606 4.606 18 H 0.066 0.934 19 C 0.035 3.965 20 N -0.886 5.886 21 Si 1.090 2.910 22 H -0.288 1.288 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.348 0.652 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.246 -0.297 -23.715 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.090 0.910 4 C -0.171 4.171 5 C -0.034 4.034 6 H 0.084 0.916 7 N -0.309 5.309 8 C -0.105 4.105 9 C 0.008 3.992 10 F -0.197 7.197 11 C -0.014 4.014 12 N -0.359 5.359 13 C 0.339 3.661 14 O -0.387 6.387 15 C -0.275 4.275 16 S 0.109 5.891 17 C -0.754 4.754 18 H 0.084 0.916 19 C -0.175 4.175 20 N -0.520 5.520 21 Si 0.916 3.084 22 H -0.214 1.214 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.167 0.833 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.761 -0.273 -21.195 22.249 hybrid contribution 1.677 0.302 -2.534 3.054 sum 8.438 0.029 -23.729 25.184 Atomic orbital electron populations 1.22176 0.93576 1.02888 1.03688 1.21767 0.95676 0.95141 0.83872 0.90953 1.23101 0.95291 1.01102 0.97566 1.22512 0.96370 0.90414 0.94067 0.91586 1.60216 1.08007 1.39073 1.23557 1.22597 0.88611 0.96896 1.02401 1.21882 0.75742 0.99747 1.01876 1.92777 1.31372 1.97540 1.98039 1.21984 0.87577 0.98024 0.93814 1.48488 1.28391 1.49770 1.09275 1.19933 0.83678 0.81270 0.81230 1.90641 1.24584 1.42542 1.80960 1.23304 1.03837 1.02104 0.98294 1.84783 1.38593 1.65237 1.00464 1.23760 1.16655 1.35904 0.99121 0.91556 1.26050 0.97243 0.98117 0.96101 1.70735 1.15124 1.27058 1.39080 0.83252 0.74785 0.75488 0.74860 1.21397 1.20875 1.20886 0.89036 0.92406 0.92530 0.89345 0.89971 0.83329 0.93813 0.89392 0.89558 0.90939 0.91605 0.89986 0.89205 0.89059 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 8.71 37.16 0.32 -1.76 16 2 C 0.14 1.60 3.76 -66.42 -0.25 1.35 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -1.03 5.89 -24.58 -0.14 -1.17 16 5 C 0.08 0.60 3.27 -65.87 -0.22 0.39 16 6 H 0.07 0.48 7.82 -51.93 -0.41 0.08 16 7 N -0.68 -4.46 6.32 -104.79 -0.66 -5.12 16 8 C 0.02 0.16 6.01 -3.82 -0.02 0.14 16 9 C 0.06 0.38 7.81 37.16 0.29 0.67 16 10 F -0.22 -1.97 17.36 2.25 0.04 -1.93 16 11 C 0.11 1.24 6.25 -3.06 -0.02 1.22 16 12 N -0.62 -8.91 3.24 -163.04 -0.53 -9.44 16 13 C 0.55 10.58 7.65 -10.98 -0.08 10.49 16 14 O -0.51 -11.47 13.52 5.56 0.08 -11.39 16 15 C -0.12 -2.61 5.35 36.01 0.19 -2.41 16 16 S -0.12 -3.19 19.60 -107.50 -2.11 -5.30 16 17 C -0.61 -17.67 9.50 30.94 0.29 -17.38 16 18 H 0.07 1.86 7.80 -52.49 -0.41 1.46 16 19 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 20 N -0.89 -27.74 13.67 55.49 0.76 -26.98 16 21 Si 1.09 25.27 29.92 -169.99 -5.09 20.18 16 22 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H 0.09 1.47 5.89 -51.93 -0.31 1.17 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.09 0.71 8.06 -51.93 -0.42 0.30 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.35 1.66 8.43 -39.29 -0.33 1.33 16 31 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.98 8.03 -51.93 -0.42 0.56 16 37 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 38 H 0.09 1.82 8.14 -51.92 -0.42 1.39 16 39 H 0.28 8.90 7.13 -40.82 -0.29 8.61 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -34.59 337.29 -8.18 -42.77 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.02 Total: -0.35 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 0.27 Total: -7.52 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -0.43 Total: -41.54 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.09 Total: 20.18 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.11 Total: -5.30 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.59 -8.18 -42.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755669429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.272 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds