Wall clock time and date at job start Tue Mar 31 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00113 * 2 1 4 4 H 1.48506 * 109.46975 * 270.00266 * 3 2 1 5 5 H 1.48506 * 109.47334 * 29.99748 * 3 2 1 6 6 H 1.48496 * 109.47411 * 149.99823 * 3 2 1 7 7 C 1.38803 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99518 * 174.43562 * 7 2 1 9 9 N 1.36936 * 120.00661 * 354.43090 * 7 2 1 10 10 C 1.46923 * 120.63303 * 145.35258 * 9 7 2 11 11 C 1.53197 * 108.89188 * 126.30227 * 10 9 7 12 12 C 1.53358 * 109.14881 * 54.57788 * 11 10 9 13 13 C 1.50696 * 109.41786 * 178.67475 * 12 11 10 14 14 O 1.21294 * 120.00075 * 120.12642 * 13 12 11 15 15 N 1.34782 * 120.00193 * 300.12876 * 13 12 11 16 16 C 1.40106 * 119.99994 * 185.54791 * 15 13 12 17 17 C 1.38848 * 120.01268 * 214.35637 * 16 15 13 18 18 C 1.38091 * 119.98157 * 179.72096 * 17 16 15 19 19 C 1.38721 * 120.01537 * 0.55434 * 18 17 16 20 20 O 1.35975 * 119.98689 * 179.69604 * 19 18 17 21 21 C 1.38719 * 120.02973 * 359.72427 * 19 18 17 22 22 C 1.38090 * 120.01502 * 359.97438 * 21 19 18 23 23 C 1.53035 * 109.60571 * 298.71364 * 12 11 10 24 24 C 1.46925 * 120.62834 * 325.33517 * 9 7 2 25 25 H 0.97003 * 119.99302 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.58881 * 246.15999 * 10 9 7 27 27 H 1.08997 * 109.58709 * 6.44672 * 10 9 7 28 28 H 1.08993 * 109.49806 * 174.65689 * 11 10 9 29 29 H 1.09004 * 109.49812 * 294.75680 * 11 10 9 30 30 H 1.09001 * 109.42043 * 58.75154 * 12 11 10 31 31 H 0.97002 * 119.99466 * 5.55096 * 15 13 12 32 32 H 1.07997 * 120.00863 * 359.97438 * 17 16 15 33 33 H 1.08004 * 119.99123 * 180.27565 * 18 17 16 34 34 H 0.96699 * 114.00144 * 270.02541 * 20 19 18 35 35 H 1.08002 * 119.99349 * 179.97438 * 21 19 18 36 36 H 1.08001 * 120.00346 * 179.97438 * 22 21 19 37 37 H 1.09007 * 109.50252 * 301.41817 * 23 12 11 38 38 H 1.09003 * 109.49723 * 181.32628 * 23 12 11 39 39 H 1.09002 * 109.58966 * 353.41299 * 24 9 7 40 40 H 1.09007 * 109.59021 * 113.69482 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0865 -1.2043 -0.0912 9 7 1.3304 -2.3853 0.1140 10 6 1.7969 -3.5879 -0.5894 11 6 1.9525 -4.7263 0.4239 12 6 0.6315 -4.9099 1.1809 13 6 0.7677 -6.0501 2.1569 14 8 0.6093 -5.8549 3.3435 15 7 1.0656 -7.2867 1.7112 16 6 1.0780 -8.3682 2.6019 17 6 1.9893 -9.4011 2.4275 18 6 2.0048 -10.4639 3.3090 19 6 1.1025 -10.5053 4.3619 20 8 1.1142 -11.5552 5.2260 21 6 0.1880 -9.4765 4.5333 22 6 0.1755 -8.4101 3.6561 23 6 0.2925 -3.6258 1.9411 24 6 0.1208 -2.4764 0.9430 25 1 -0.4849 0.8401 -0.0004 26 1 1.0691 -3.8721 -1.3494 27 1 2.7581 -3.3852 -1.0617 28 1 2.2065 -5.6476 -0.1001 29 1 2.7448 -4.4787 1.1304 30 1 -0.1651 -5.1327 0.4710 31 1 1.2715 -7.4279 0.7739 32 1 2.6886 -9.3714 1.6050 33 1 2.7166 -11.2653 3.1761 34 1 0.5396 -12.2872 4.9633 35 1 -0.5145 -9.5096 5.3530 36 1 -0.5369 -7.6094 3.7895 37 1 1.1004 -3.3887 2.6335 38 1 -0.6344 -3.7662 2.4973 39 1 -0.0227 -1.5411 1.4841 40 1 -0.7441 -2.6674 0.3078 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299540821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:41 Heat of formation + Delta-G solvation = -36.150905 kcal Electronic energy + Delta-G solvation = -22625.555169 eV Core-core repulsion = 19212.717155 eV Total energy + Delta-G solvation = -3412.838014 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70269 -39.33431 -37.37350 -36.59006 -34.31356 -33.16148 -31.19545 -30.64187 -29.92186 -28.57828 -25.74445 -23.53524 -23.05548 -22.34056 -21.87192 -20.32291 -19.15950 -18.61244 -17.87517 -16.89840 -16.75180 -15.73264 -15.57219 -14.85108 -14.77739 -14.45663 -14.07641 -13.76777 -13.58650 -13.51327 -13.09586 -12.98374 -12.68757 -12.41746 -12.23546 -12.16308 -11.60568 -11.05957 -10.94882 -10.78711 -10.74799 -10.32716 -10.27208 -10.25561 -10.04048 -9.85616 -9.62612 -9.37800 -9.15023 -8.49549 -8.11262 -6.59749 -5.80627 -3.32596 0.98500 1.16359 2.68193 3.04427 3.36496 3.43174 3.44922 3.50391 4.03807 4.46878 4.64814 4.75720 4.87846 5.12809 5.23339 5.27246 5.37645 5.39595 5.42502 5.53846 5.72958 5.81224 5.87998 5.99466 6.16554 6.22181 6.24219 6.28874 6.32126 6.57269 6.63365 6.69657 6.74238 6.78886 6.88130 7.34298 7.41179 7.43724 7.69942 7.78021 8.20453 8.48791 9.21448 9.81011 10.40350 11.27498 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.045018 B = 0.002937 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.817703 B = 9530.356659 C = 9759.460880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.008 3.992 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.063 0.937 9 N -0.592 5.592 10 C 0.147 3.853 11 C -0.125 4.125 12 C -0.095 4.095 13 C 0.518 3.482 14 O -0.519 6.519 15 N -0.681 5.681 16 C 0.149 3.851 17 C -0.134 4.134 18 C -0.125 4.125 19 C 0.079 3.921 20 O -0.500 6.500 21 C -0.123 4.123 22 C -0.107 4.107 23 C -0.121 4.121 24 C 0.172 3.828 25 H 0.255 0.745 26 H 0.020 0.980 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.411 0.589 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.386 0.614 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.195 -21.239 2.705 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.080 0.920 9 N -0.315 5.315 10 C 0.020 3.980 11 C -0.165 4.165 12 C -0.116 4.116 13 C 0.307 3.693 14 O -0.393 6.393 15 N -0.327 5.327 16 C 0.055 3.945 17 C -0.155 4.155 18 C -0.144 4.144 19 C 0.034 3.966 20 O -0.309 6.309 21 C -0.143 4.143 22 C -0.127 4.127 23 C -0.160 4.160 24 C 0.046 3.954 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.247 0.753 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.241 0.759 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 0.344 -20.486 3.841 20.846 hybrid contribution 0.216 0.388 -0.704 0.832 sum 0.560 -20.098 3.137 20.349 Atomic orbital electron populations 1.69944 1.05312 1.25571 1.53989 1.25273 0.95487 0.98451 0.99929 0.86260 0.79121 0.83457 0.77701 1.21285 1.21553 1.20407 1.19135 0.90142 0.83413 1.45881 0.91971 1.43992 1.29672 1.05915 1.51951 1.20883 0.98061 0.87056 0.91965 1.22139 0.95228 0.99656 0.99449 1.21407 1.00378 0.93234 0.96573 1.21533 0.74325 0.83112 0.90299 1.90687 1.47742 1.83457 1.17384 1.43839 1.70525 1.06452 1.11861 1.17861 0.95108 0.88515 0.93045 1.20796 0.98487 0.94907 1.01300 1.21167 0.99922 0.99334 0.93966 1.18419 0.97037 0.89992 0.91150 1.84869 1.69521 1.28292 1.48238 1.21314 0.98986 0.94275 0.99681 1.21076 0.98437 0.98370 0.94807 1.22103 1.00999 0.93967 0.98957 1.20843 0.87904 0.95935 0.90722 0.93512 0.96218 0.92424 0.92923 0.91712 0.88824 0.75253 0.85197 0.85191 0.75907 0.85170 0.84398 0.91983 0.92594 0.89065 0.96269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.93 11.02 55.49 0.61 -25.32 16 2 C 0.01 0.21 5.14 -17.43 -0.09 0.12 16 3 Si 0.91 21.55 29.56 -169.99 -5.02 16.53 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.26 -6.93 9.56 -15.06 -0.14 -7.08 16 8 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 9 N -0.59 -14.50 2.98 -172.32 -0.51 -15.01 16 10 C 0.15 2.88 6.50 -3.71 -0.02 2.85 16 11 C -0.13 -1.98 5.29 -26.44 -0.14 -2.12 16 12 C -0.09 -1.52 2.50 -91.57 -0.23 -1.75 16 13 C 0.52 8.04 6.88 -10.98 -0.08 7.97 16 14 O -0.52 -9.79 13.77 5.54 0.08 -9.72 16 15 N -0.68 -8.18 5.27 -9.83 -0.05 -8.23 16 16 C 0.15 1.83 6.26 -83.62 -0.52 1.31 16 17 C -0.13 -1.36 9.96 -39.41 -0.39 -1.75 16 18 C -0.12 -1.22 9.98 -39.46 -0.39 -1.61 16 19 C 0.08 0.83 6.70 -39.23 -0.26 0.57 16 20 O -0.50 -4.56 13.50 -19.66 -0.27 -4.82 16 21 C -0.12 -1.40 9.98 -39.46 -0.39 -1.79 16 22 C -0.11 -1.39 8.65 -39.41 -0.34 -1.73 16 23 C -0.12 -2.38 4.65 -26.62 -0.12 -2.50 16 24 C 0.17 4.04 5.22 -3.71 -0.02 4.02 16 25 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 1.11 7.93 -51.93 -0.41 0.69 16 28 H 0.05 0.63 7.42 -51.93 -0.39 0.24 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.41 3.69 8.07 -40.82 -0.33 3.36 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.39 1.53 9.06 45.56 0.41 1.94 16 35 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.14 1.98 6.52 -52.49 -0.34 1.63 16 37 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 38 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 39 H 0.09 2.44 6.20 -51.93 -0.32 2.12 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -32.86 328.99 -8.09 -40.95 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.72 Total: 4.16 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -3.15 Total: -3.50 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.05 Total: -48.56 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.19 Total: -14.54 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.86 -8.09 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299540821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.800 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds