Wall clock time and date at job start Tue Mar 31 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00113 * 2 1 4 4 H 1.48506 * 109.46975 * 270.00266 * 3 2 1 5 5 H 1.48506 * 109.47334 * 29.99748 * 3 2 1 6 6 H 1.48496 * 109.47411 * 149.99823 * 3 2 1 7 7 C 1.38803 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99518 * 174.43562 * 7 2 1 9 9 N 1.36936 * 120.00661 * 354.43090 * 7 2 1 10 10 C 1.46923 * 120.63303 * 145.35258 * 9 7 2 11 11 C 1.53197 * 108.89188 * 126.30227 * 10 9 7 12 12 C 1.53358 * 109.14881 * 54.57788 * 11 10 9 13 13 C 1.50696 * 109.41786 * 178.67475 * 12 11 10 14 14 O 1.21294 * 120.00075 * 120.12642 * 13 12 11 15 15 N 1.34782 * 120.00193 * 300.12876 * 13 12 11 16 16 C 1.40106 * 119.99994 * 185.54791 * 15 13 12 17 17 C 1.38848 * 120.01268 * 214.35637 * 16 15 13 18 18 C 1.38091 * 119.98157 * 179.72096 * 17 16 15 19 19 C 1.38721 * 120.01537 * 0.55434 * 18 17 16 20 20 O 1.35975 * 119.98689 * 179.69604 * 19 18 17 21 21 C 1.38719 * 120.02973 * 359.72427 * 19 18 17 22 22 C 1.38090 * 120.01502 * 359.97438 * 21 19 18 23 23 C 1.53035 * 109.60571 * 298.71364 * 12 11 10 24 24 C 1.46925 * 120.62834 * 325.33517 * 9 7 2 25 25 H 0.97003 * 119.99302 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.58881 * 246.15999 * 10 9 7 27 27 H 1.08997 * 109.58709 * 6.44672 * 10 9 7 28 28 H 1.08993 * 109.49806 * 174.65689 * 11 10 9 29 29 H 1.09004 * 109.49812 * 294.75680 * 11 10 9 30 30 H 1.09001 * 109.42043 * 58.75154 * 12 11 10 31 31 H 0.97002 * 119.99466 * 5.55096 * 15 13 12 32 32 H 1.07997 * 120.00863 * 359.97438 * 17 16 15 33 33 H 1.08004 * 119.99123 * 180.27565 * 18 17 16 34 34 H 0.96699 * 114.00144 * 270.02541 * 20 19 18 35 35 H 1.08002 * 119.99349 * 179.97438 * 21 19 18 36 36 H 1.08001 * 120.00346 * 179.97438 * 22 21 19 37 37 H 1.09007 * 109.50252 * 301.41817 * 23 12 11 38 38 H 1.09003 * 109.49723 * 181.32628 * 23 12 11 39 39 H 1.09002 * 109.58966 * 353.41299 * 24 9 7 40 40 H 1.09007 * 109.59021 * 113.69482 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0865 -1.2043 -0.0912 9 7 1.3304 -2.3853 0.1140 10 6 1.7969 -3.5879 -0.5894 11 6 1.9525 -4.7263 0.4239 12 6 0.6315 -4.9099 1.1809 13 6 0.7677 -6.0501 2.1569 14 8 0.6093 -5.8549 3.3435 15 7 1.0656 -7.2867 1.7112 16 6 1.0780 -8.3682 2.6019 17 6 1.9893 -9.4011 2.4275 18 6 2.0048 -10.4639 3.3090 19 6 1.1025 -10.5053 4.3619 20 8 1.1142 -11.5552 5.2260 21 6 0.1880 -9.4765 4.5333 22 6 0.1755 -8.4101 3.6561 23 6 0.2925 -3.6258 1.9411 24 6 0.1208 -2.4764 0.9430 25 1 -0.4849 0.8401 -0.0004 26 1 1.0691 -3.8721 -1.3494 27 1 2.7581 -3.3852 -1.0617 28 1 2.2065 -5.6476 -0.1001 29 1 2.7448 -4.4787 1.1304 30 1 -0.1651 -5.1327 0.4710 31 1 1.2715 -7.4279 0.7739 32 1 2.6886 -9.3714 1.6050 33 1 2.7166 -11.2653 3.1761 34 1 0.5396 -12.2872 4.9633 35 1 -0.5145 -9.5096 5.3530 36 1 -0.5369 -7.6094 3.7895 37 1 1.1004 -3.3887 2.6335 38 1 -0.6344 -3.7662 2.4973 39 1 -0.0227 -1.5411 1.4841 40 1 -0.7441 -2.6674 0.3078 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299540821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:40 Heat of formation + Delta-G solvation = -59.216143 kcal Electronic energy + Delta-G solvation = -22626.555353 eV Core-core repulsion = 19212.717155 eV Total energy + Delta-G solvation = -3413.838198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77685 -40.29386 -38.74628 -37.67041 -35.40548 -34.88780 -32.43694 -31.99758 -31.54807 -29.60308 -27.47500 -24.93172 -24.03891 -23.83312 -23.08656 -21.61054 -20.68061 -19.35233 -19.00404 -18.52579 -18.04787 -16.89741 -16.57170 -16.36032 -15.91765 -15.81880 -15.32667 -15.21448 -15.05357 -14.74137 -14.42515 -14.19767 -14.01988 -13.74287 -13.34536 -13.18399 -12.98749 -12.86808 -12.72042 -12.59488 -12.05583 -12.03350 -11.86740 -11.56720 -11.41116 -11.30655 -11.19497 -10.73352 -10.55341 -9.99136 -9.00161 -8.56954 -7.86828 -5.41277 0.13748 0.34855 1.46588 1.47803 1.52768 1.56780 2.01106 2.50478 2.69123 3.29933 3.34142 3.62406 3.72529 3.87833 3.95095 3.96611 4.00065 4.34773 4.38771 4.49557 4.54003 4.59278 4.70699 4.85095 4.96041 5.01017 5.06505 5.09156 5.11760 5.18638 5.31358 5.37645 5.43215 5.45203 5.54242 5.65488 5.76004 5.89999 6.39682 6.44816 6.89460 7.10902 7.17766 7.86641 8.39768 9.18923 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.045018 B = 0.002937 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.817703 B = 9530.356659 C = 9759.460880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.968 3.032 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.265 4.265 8 H 0.064 0.936 9 N -0.614 5.614 10 C 0.141 3.859 11 C -0.111 4.111 12 C -0.088 4.088 13 C 0.524 3.476 14 O -0.560 6.560 15 N -0.660 5.660 16 C 0.125 3.875 17 C -0.123 4.123 18 C -0.125 4.125 19 C 0.083 3.917 20 O -0.509 6.509 21 C -0.137 4.137 22 C -0.126 4.126 23 C -0.107 4.107 24 C 0.181 3.819 25 H 0.250 0.750 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.048 0.952 30 H 0.114 0.886 31 H 0.428 0.572 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.410 0.590 35 H 0.136 0.864 36 H 0.115 0.885 37 H 0.039 0.961 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 -24.023 1.831 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.243 4.243 3 Si 0.796 3.204 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.395 4.395 8 H 0.082 0.918 9 N -0.338 5.338 10 C 0.016 3.984 11 C -0.150 4.150 12 C -0.109 4.109 13 C 0.314 3.686 14 O -0.437 6.437 15 N -0.307 5.307 16 C 0.031 3.969 17 C -0.143 4.143 18 C -0.144 4.144 19 C 0.038 3.962 20 O -0.322 6.322 21 C -0.156 4.156 22 C -0.146 4.146 23 C -0.147 4.147 24 C 0.056 3.944 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.067 0.933 30 H 0.132 0.868 31 H 0.268 0.732 32 H 0.177 0.823 33 H 0.174 0.826 34 H 0.268 0.732 35 H 0.154 0.846 36 H 0.133 0.867 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 2.010 -23.350 2.927 23.619 hybrid contribution -0.297 1.098 -0.392 1.203 sum 1.713 -22.253 2.535 22.462 Atomic orbital electron populations 1.70109 1.06637 1.25808 1.55502 1.26011 0.96266 1.01604 1.00436 0.85274 0.77975 0.79500 0.77684 1.20722 1.22090 1.19637 1.19464 0.90522 0.84767 1.44788 0.91845 1.44261 1.29596 1.06876 1.53022 1.21092 0.98169 0.86262 0.92878 1.22000 0.94314 1.00368 0.98327 1.21258 1.01371 0.91697 0.96567 1.21193 0.74204 0.83958 0.89294 1.90686 1.49890 1.84207 1.18890 1.43503 1.69216 1.05227 1.12783 1.18018 0.96239 0.89254 0.93353 1.21086 0.97743 0.93656 1.01809 1.21493 0.99834 0.99820 0.93228 1.18536 0.96510 0.89993 0.91135 1.84806 1.70304 1.28749 1.48326 1.21425 0.99862 0.94415 0.99855 1.21025 0.98989 0.98505 0.96118 1.21814 1.00311 0.94795 0.97804 1.20550 0.87599 0.95500 0.90789 0.94077 0.95215 0.92114 0.87672 0.93271 0.86817 0.73221 0.82273 0.82558 0.73160 0.84590 0.86700 0.94228 0.92450 0.93117 0.97543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.38 11.02 21.65 0.24 -55.14 16 2 C -0.05 -2.67 5.14 84.86 0.44 -2.23 16 3 Si 0.97 45.05 29.56 68.60 2.03 47.08 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.26 -14.53 9.56 84.03 0.80 -13.73 16 8 H 0.06 3.39 7.83 -2.91 -0.02 3.36 16 9 N -0.61 -30.32 2.98 -699.10 -2.08 -32.41 16 10 C 0.14 5.30 6.50 86.36 0.56 5.86 16 11 C -0.11 -3.22 5.29 30.78 0.16 -3.06 16 12 C -0.09 -2.70 2.50 -11.41 -0.03 -2.73 16 13 C 0.52 15.61 6.88 87.65 0.60 16.21 16 14 O -0.56 -21.29 13.77 -3.07 -0.04 -21.33 16 15 N -0.66 -14.15 5.27 -303.39 -1.60 -15.75 16 16 C 0.13 2.81 6.26 38.11 0.24 3.05 16 17 C -0.12 -2.04 9.96 22.38 0.22 -1.82 16 18 C -0.12 -1.98 9.98 22.35 0.22 -1.76 16 19 C 0.08 1.56 6.70 22.50 0.15 1.71 16 20 O -0.51 -7.90 13.50 -93.27 -1.26 -9.16 16 21 C -0.14 -2.98 9.98 22.35 0.22 -2.76 16 22 C -0.13 -3.23 8.65 22.38 0.19 -3.04 16 23 C -0.11 -4.34 4.65 30.67 0.14 -4.20 16 24 C 0.18 8.84 5.22 86.36 0.45 9.29 16 25 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 26 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 28 H 0.11 1.99 7.42 -2.39 -0.02 1.98 16 29 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.43 5.91 8.07 -92.71 -0.75 5.16 16 32 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 33 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 34 H 0.41 2.04 9.06 -74.06 -0.67 1.37 16 35 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 36 H 0.11 3.43 6.52 -2.91 -0.02 3.41 16 37 H 0.04 1.75 8.13 -2.38 -0.02 1.73 16 38 H 0.06 2.26 8.07 -2.39 -0.02 2.24 16 39 H 0.05 2.86 6.20 -2.39 -0.01 2.85 16 40 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 Total: -1.00 -73.98 328.99 1.32 -72.66 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -0.35 Total: 13.23 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 4.38 Total: 0.82 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -3.44 Total: -103.30 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -1.30 Total: -30.50 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -73.98 1.32 -72.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299540821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.447 kcal (2) G-P(sol) polarization free energy of solvation -73.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds