Wall clock time and date at job start Tue Mar 31 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99971 * 2 1 4 4 H 1.48502 * 109.47406 * 272.93129 * 3 2 1 5 5 H 1.48504 * 109.47139 * 32.93270 * 3 2 1 6 6 H 1.48494 * 109.47265 * 152.92998 * 3 2 1 7 7 C 1.38809 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99509 * 339.36644 * 7 2 1 9 9 N 1.36934 * 120.00302 * 159.37131 * 7 2 1 10 10 C 1.46920 * 120.62867 * 332.60590 * 9 7 2 11 11 C 1.53169 * 108.76394 * 233.63260 * 10 9 7 12 12 C 1.53040 * 109.32747 * 305.35342 * 11 10 9 13 13 C 1.53032 * 109.52632 * 61.37144 * 12 11 10 14 14 H 1.08998 * 109.49697 * 58.59972 * 13 12 11 15 15 N 1.46501 * 109.49843 * 178.69149 * 13 12 11 16 16 C 1.34776 * 120.00089 * 205.00391 * 15 13 12 17 17 O 1.21592 * 120.00011 * 0.02562 * 16 15 13 18 18 C 1.47543 * 120.00153 * 179.97438 * 16 15 13 19 19 C 1.39713 * 120.18840 * 0.02562 * 18 16 15 20 20 C 1.37781 * 119.90629 * 179.97438 * 19 18 16 21 21 C 1.38552 * 120.30198 * 0.02562 * 20 19 18 22 22 C 1.38057 * 120.39025 * 359.97438 * 21 20 19 23 23 C 1.38715 * 120.08303 * 359.74523 * 22 21 20 24 24 O 1.35647 * 120.15083 * 180.27658 * 23 22 21 25 25 C 1.46924 * 120.63094 * 152.62364 * 9 7 2 26 26 H 0.97003 * 120.00155 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.59216 * 353.41259 * 10 9 7 28 28 H 1.08997 * 109.59165 * 113.84343 * 10 9 7 29 29 H 1.09008 * 109.47730 * 185.40840 * 11 10 9 30 30 H 1.08997 * 109.50673 * 65.31812 * 11 10 9 31 31 H 1.09004 * 109.45828 * 301.35964 * 12 11 10 32 32 H 1.08997 * 109.45893 * 181.39249 * 12 11 10 33 33 H 0.97004 * 120.00171 * 24.99996 * 15 13 12 34 34 H 1.08004 * 120.04334 * 359.95450 * 19 18 16 35 35 H 1.08000 * 119.85080 * 180.02562 * 20 19 18 36 36 H 1.07998 * 119.80667 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.95743 * 180.02562 * 22 21 20 38 38 H 0.96707 * 114.00597 * 270.23485 * 24 23 22 39 39 H 1.08998 * 109.58870 * 6.58664 * 25 9 7 40 40 H 1.09002 * 109.59198 * 246.15567 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4357 2.0823 -1.3982 5 1 1.4800 2.6340 0.7612 6 1 3.5773 1.4231 0.6371 7 6 2.0103 -1.2021 -0.0005 8 1 1.5222 -2.1075 0.3287 9 7 3.3137 -1.2399 -0.4183 10 6 3.8177 -0.2583 -1.3884 11 6 4.4619 -1.0079 -2.5585 12 6 5.5286 -1.9648 -2.0212 13 6 4.8746 -2.9902 -1.0923 14 1 4.1079 -3.5393 -1.6389 15 7 5.8911 -3.9249 -0.6030 16 6 5.5337 -5.1629 -0.2079 17 8 4.3677 -5.5042 -0.2580 18 6 6.5574 -6.1045 0.2844 19 6 7.8984 -5.7167 0.3432 20 6 8.8495 -6.6004 0.8044 21 6 8.4826 -7.8734 1.2102 22 6 7.1612 -8.2695 1.1573 23 6 6.1896 -7.3908 0.7012 24 8 4.8900 -7.7767 0.6540 25 6 4.2349 -2.2632 0.0946 26 1 -0.4850 0.8401 0.0004 27 1 2.9913 0.3505 -1.7552 28 1 4.5603 0.3801 -0.9101 29 1 4.9245 -0.2921 -3.2382 30 1 3.6991 -1.5756 -3.0913 31 1 6.2780 -1.3992 -1.4675 32 1 6.0056 -2.4814 -2.8540 33 1 6.8213 -3.6529 -0.5634 34 1 8.1890 -4.7256 0.0272 35 1 9.8858 -6.2996 0.8498 36 1 9.2348 -8.5598 1.5699 37 1 6.8829 -9.2633 1.4758 38 1 4.6321 -8.1889 -0.1820 39 1 3.6837 -2.9773 0.7065 40 1 5.0116 -1.7883 0.6940 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006777533.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:50 Heat of formation + Delta-G solvation = -23.893589 kcal Electronic energy + Delta-G solvation = -23103.293096 eV Core-core repulsion = 19690.986600 eV Total energy + Delta-G solvation = -3412.306497 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.50834 -38.91134 -37.40309 -36.81247 -34.39681 -32.61776 -31.52259 -30.81711 -30.03098 -28.92351 -25.29554 -24.31006 -22.93457 -22.20904 -21.92456 -20.30411 -19.75471 -18.55807 -17.55048 -16.80290 -16.19012 -15.81589 -15.40542 -15.08939 -15.07383 -14.71015 -14.30340 -13.92564 -13.67801 -13.59735 -13.20503 -12.82255 -12.57605 -12.41115 -12.33533 -12.05808 -11.93470 -11.51734 -11.13314 -10.90146 -10.83297 -10.74122 -10.14703 -9.96719 -9.73611 -9.59636 -9.42215 -9.31959 -8.99984 -8.88651 -8.48519 -6.94008 -5.89454 -3.25993 0.60975 0.97485 2.86648 3.25288 3.33651 3.50437 3.53441 3.62698 4.04743 4.51410 4.55966 4.57187 4.70229 4.99561 5.06021 5.09167 5.18693 5.28762 5.44138 5.46848 5.53279 5.55456 5.83207 5.90624 5.94803 6.01419 6.07293 6.09556 6.20609 6.31202 6.42558 6.44958 6.55673 6.64469 6.66859 6.80597 6.95876 7.59428 7.68449 8.00996 8.38177 8.43311 8.99378 9.76596 10.12232 11.26591 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027184 B = 0.003846 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.767549 B = 7278.845238 C = 7782.016561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.258 4.258 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.122 3.878 11 C -0.132 4.132 12 C -0.116 4.116 13 C 0.126 3.874 14 H 0.091 0.909 15 N -0.721 5.721 16 C 0.551 3.449 17 O -0.513 6.513 18 C -0.160 4.160 19 C -0.072 4.072 20 C -0.140 4.140 21 C -0.082 4.082 22 C -0.158 4.158 23 C 0.168 3.832 24 O -0.476 6.476 25 C 0.144 3.856 26 H 0.262 0.738 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.392 0.608 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.396 0.604 39 H 0.068 0.932 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.201 -13.299 -2.366 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.197 1.197 7 C -0.386 4.386 8 H 0.105 0.895 9 N -0.325 5.325 10 C -0.004 4.004 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.021 3.979 14 H 0.109 0.891 15 N -0.373 5.373 16 C 0.338 3.662 17 O -0.389 6.389 18 C -0.164 4.164 19 C -0.091 4.091 20 C -0.158 4.158 21 C -0.101 4.101 22 C -0.177 4.177 23 C 0.121 3.879 24 O -0.287 6.287 25 C 0.017 3.983 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.227 0.773 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.254 0.746 39 H 0.086 0.914 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 20.109 -13.220 -1.821 24.134 hybrid contribution 0.970 0.988 -0.376 1.435 sum 21.080 -12.232 -2.197 24.470 Atomic orbital electron populations 1.69845 1.05709 1.26461 1.53074 1.25265 0.95218 0.97474 0.99582 0.86947 0.80016 0.84746 0.76930 1.21625 1.23172 1.19668 1.18969 0.84780 0.94933 1.39967 0.89538 1.44292 1.08713 1.32701 1.46794 1.21398 0.97417 0.92110 0.89460 1.21996 0.97836 0.98322 0.98990 1.21681 0.98404 0.97011 0.98312 1.21699 0.89947 0.89360 0.96887 0.89071 1.46030 1.11354 1.13450 1.66429 1.18039 0.88135 0.81823 0.78252 1.90860 1.18439 1.76748 1.52835 1.20582 0.94214 0.96085 1.05501 1.21270 0.91447 0.99572 0.96835 1.21092 0.99781 0.93997 1.00956 1.21206 0.95674 0.96183 0.97017 1.21481 0.92670 1.00315 1.03220 1.18553 0.84240 0.90705 0.94387 1.84775 1.22011 1.81095 1.40812 1.21223 0.92698 0.91322 0.93069 0.92792 0.90732 0.95671 0.92234 0.91361 0.92131 0.92439 0.77330 0.85253 0.85247 0.85281 0.84803 0.74631 0.91363 0.96035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.60 13.97 55.49 0.78 -27.83 16 2 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 3 Si 0.88 22.72 24.34 -169.99 -4.14 18.58 16 4 H -0.29 -7.08 6.62 56.52 0.37 -6.71 16 5 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 6 H -0.27 -6.85 6.63 56.52 0.37 -6.48 16 7 C -0.26 -7.55 10.03 -15.06 -0.15 -7.70 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 9 N -0.60 -14.82 2.77 -172.34 -0.48 -15.30 16 10 C 0.12 2.66 4.20 -3.73 -0.02 2.64 16 11 C -0.13 -2.27 6.08 -26.62 -0.16 -2.43 16 12 C -0.12 -1.71 5.36 -26.69 -0.14 -1.85 16 13 C 0.13 2.18 2.60 -67.81 -0.18 2.01 16 14 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 15 N -0.72 -10.12 5.03 -54.73 -0.28 -10.40 16 16 C 0.55 8.72 7.73 -12.47 -0.10 8.62 16 17 O -0.51 -10.31 14.82 -16.59 -0.25 -10.56 16 18 C -0.16 -2.01 5.89 -104.84 -0.62 -2.63 16 19 C -0.07 -0.67 9.54 -39.20 -0.37 -1.04 16 20 C -0.14 -1.05 10.02 -39.63 -0.40 -1.45 16 21 C -0.08 -0.61 10.03 -39.53 -0.40 -1.01 16 22 C -0.16 -1.45 9.98 -39.47 -0.39 -1.85 16 23 C 0.17 2.04 6.72 -38.69 -0.26 1.78 16 24 O -0.48 -6.36 11.58 -40.52 -0.47 -6.83 16 25 C 0.14 3.06 6.09 -3.71 -0.02 3.03 16 26 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 27 H 0.07 1.79 4.49 -51.93 -0.23 1.55 16 28 H 0.03 0.54 7.08 -51.93 -0.37 0.17 16 29 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.39 4.11 6.63 -40.82 -0.27 3.84 16 34 H 0.13 0.89 6.40 -52.48 -0.34 0.56 16 35 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.40 3.71 9.06 45.56 0.41 4.12 16 39 H 0.07 1.61 7.93 -51.93 -0.41 1.19 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 322.80 15.07 4.86 4.86 Total: -1.00 -36.00 322.80 -7.86 -43.85 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.59 Total: 4.88 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -3.30 Total: -1.27 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.02 Total: -53.52 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.71 Total: -17.39 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.14 Total: 18.58 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.00 -7.86 -43.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006777533.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.961 kcal (2) G-P(sol) polarization free energy of solvation -35.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds