Wall clock time and date at job start Tue Mar 31 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99971 * 2 1 4 4 H 1.48502 * 109.47406 * 272.93129 * 3 2 1 5 5 H 1.48504 * 109.47139 * 32.93270 * 3 2 1 6 6 H 1.48494 * 109.47265 * 152.92998 * 3 2 1 7 7 C 1.38809 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99509 * 339.36644 * 7 2 1 9 9 N 1.36934 * 120.00302 * 159.37131 * 7 2 1 10 10 C 1.46920 * 120.62867 * 332.60590 * 9 7 2 11 11 C 1.53169 * 108.76394 * 233.63260 * 10 9 7 12 12 C 1.53040 * 109.32747 * 305.35342 * 11 10 9 13 13 C 1.53032 * 109.52632 * 61.37144 * 12 11 10 14 14 H 1.08998 * 109.49697 * 58.59972 * 13 12 11 15 15 N 1.46501 * 109.49843 * 178.69149 * 13 12 11 16 16 C 1.34776 * 120.00089 * 205.00391 * 15 13 12 17 17 O 1.21592 * 120.00011 * 0.02562 * 16 15 13 18 18 C 1.47543 * 120.00153 * 179.97438 * 16 15 13 19 19 C 1.39713 * 120.18840 * 0.02562 * 18 16 15 20 20 C 1.37781 * 119.90629 * 179.97438 * 19 18 16 21 21 C 1.38552 * 120.30198 * 0.02562 * 20 19 18 22 22 C 1.38057 * 120.39025 * 359.97438 * 21 20 19 23 23 C 1.38715 * 120.08303 * 359.74523 * 22 21 20 24 24 O 1.35647 * 120.15083 * 180.27658 * 23 22 21 25 25 C 1.46924 * 120.63094 * 152.62364 * 9 7 2 26 26 H 0.97003 * 120.00155 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.59216 * 353.41259 * 10 9 7 28 28 H 1.08997 * 109.59165 * 113.84343 * 10 9 7 29 29 H 1.09008 * 109.47730 * 185.40840 * 11 10 9 30 30 H 1.08997 * 109.50673 * 65.31812 * 11 10 9 31 31 H 1.09004 * 109.45828 * 301.35964 * 12 11 10 32 32 H 1.08997 * 109.45893 * 181.39249 * 12 11 10 33 33 H 0.97004 * 120.00171 * 24.99996 * 15 13 12 34 34 H 1.08004 * 120.04334 * 359.95450 * 19 18 16 35 35 H 1.08000 * 119.85080 * 180.02562 * 20 19 18 36 36 H 1.07998 * 119.80667 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.95743 * 180.02562 * 22 21 20 38 38 H 0.96707 * 114.00597 * 270.23485 * 24 23 22 39 39 H 1.08998 * 109.58870 * 6.58664 * 25 9 7 40 40 H 1.09002 * 109.59198 * 246.15567 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4357 2.0823 -1.3982 5 1 1.4800 2.6340 0.7612 6 1 3.5773 1.4231 0.6371 7 6 2.0103 -1.2021 -0.0005 8 1 1.5222 -2.1075 0.3287 9 7 3.3137 -1.2399 -0.4183 10 6 3.8177 -0.2583 -1.3884 11 6 4.4619 -1.0079 -2.5585 12 6 5.5286 -1.9648 -2.0212 13 6 4.8746 -2.9902 -1.0923 14 1 4.1079 -3.5393 -1.6389 15 7 5.8911 -3.9249 -0.6030 16 6 5.5337 -5.1629 -0.2079 17 8 4.3677 -5.5042 -0.2580 18 6 6.5574 -6.1045 0.2844 19 6 7.8984 -5.7167 0.3432 20 6 8.8495 -6.6004 0.8044 21 6 8.4826 -7.8734 1.2102 22 6 7.1612 -8.2695 1.1573 23 6 6.1896 -7.3908 0.7012 24 8 4.8900 -7.7767 0.6540 25 6 4.2349 -2.2632 0.0946 26 1 -0.4850 0.8401 0.0004 27 1 2.9913 0.3505 -1.7552 28 1 4.5603 0.3801 -0.9101 29 1 4.9245 -0.2921 -3.2382 30 1 3.6991 -1.5756 -3.0913 31 1 6.2780 -1.3992 -1.4675 32 1 6.0056 -2.4814 -2.8540 33 1 6.8213 -3.6529 -0.5634 34 1 8.1890 -4.7256 0.0272 35 1 9.8858 -6.2996 0.8498 36 1 9.2348 -8.5598 1.5699 37 1 6.8829 -9.2633 1.4758 38 1 4.6321 -8.1889 -0.1820 39 1 3.6837 -2.9773 0.7065 40 1 5.0116 -1.7883 0.6940 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006777533.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:49 Heat of formation + Delta-G solvation = -51.565707 kcal Electronic energy + Delta-G solvation = -23104.493049 eV Core-core repulsion = 19690.986600 eV Total energy + Delta-G solvation = -3413.506450 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53256 -40.08687 -38.87318 -37.66502 -35.97234 -34.35617 -32.77156 -32.46160 -30.80662 -30.29375 -27.24731 -25.37304 -23.95370 -23.75456 -23.21164 -21.51170 -21.25355 -19.48325 -18.81566 -18.52129 -17.48496 -17.17003 -16.66668 -16.29427 -16.04946 -15.94822 -15.65148 -15.43018 -15.05340 -14.90800 -14.72186 -14.35494 -14.10621 -13.73818 -13.32961 -13.27753 -13.13357 -12.81445 -12.62698 -12.59444 -12.45609 -11.87877 -11.72147 -11.66257 -11.50374 -11.37313 -10.90679 -10.70951 -10.25803 -9.98391 -9.65297 -8.94970 -8.19791 -5.54227 -0.19418 0.29355 1.28544 1.40839 1.51529 1.87485 2.08428 2.39618 2.76928 3.02948 3.27969 3.32417 3.69195 3.80983 3.90394 4.02021 4.08006 4.13148 4.30290 4.37394 4.42329 4.45136 4.63450 4.68338 4.74609 4.89689 4.92322 4.97878 5.03136 5.07920 5.18912 5.26256 5.34736 5.37582 5.45397 5.52967 5.81752 5.82833 6.07939 6.57137 6.79264 6.87283 7.27267 7.57250 7.94810 9.00861 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027184 B = 0.003846 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.767549 B = 7278.845238 C = 7782.016561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.037 4.037 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.310 1.310 6 H -0.257 1.257 7 C -0.260 4.260 8 H 0.031 0.969 9 N -0.617 5.617 10 C 0.112 3.888 11 C -0.126 4.126 12 C -0.105 4.105 13 C 0.139 3.861 14 H 0.052 0.948 15 N -0.703 5.703 16 C 0.546 3.454 17 O -0.572 6.572 18 C -0.189 4.189 19 C -0.068 4.068 20 C -0.133 4.133 21 C -0.070 4.070 22 C -0.163 4.163 23 C 0.138 3.862 24 O -0.504 6.504 25 C 0.145 3.855 26 H 0.264 0.736 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.101 0.899 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.415 0.585 34 H 0.155 0.845 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.148 0.852 38 H 0.404 0.596 39 H 0.023 0.977 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.946 -12.353 -3.099 29.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.232 4.232 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.239 1.239 6 H -0.181 1.181 7 C -0.390 4.390 8 H 0.049 0.951 9 N -0.342 5.342 10 C -0.012 4.012 11 C -0.166 4.166 12 C -0.142 4.142 13 C 0.033 3.967 14 H 0.070 0.930 15 N -0.356 5.356 16 C 0.335 3.665 17 O -0.452 6.452 18 C -0.193 4.193 19 C -0.087 4.087 20 C -0.150 4.150 21 C -0.088 4.088 22 C -0.181 4.181 23 C 0.092 3.908 24 O -0.316 6.316 25 C 0.019 3.981 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.254 0.746 34 H 0.172 0.828 35 H 0.185 0.815 36 H 0.183 0.817 37 H 0.166 0.834 38 H 0.263 0.737 39 H 0.042 0.958 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 25.955 -12.282 -2.578 28.830 hybrid contribution -0.791 0.516 -0.099 0.949 sum 25.165 -11.766 -2.677 27.908 Atomic orbital electron populations 1.70005 1.07797 1.27547 1.55242 1.26026 0.95963 1.01564 0.99609 0.85690 0.78591 0.78730 0.78087 1.18980 1.23853 1.18089 1.18772 0.87063 0.93311 1.39808 0.95067 1.44349 1.07473 1.34268 1.48121 1.21573 0.97193 0.91965 0.90427 1.21928 0.98088 0.99058 0.97516 1.21649 0.97848 0.95869 0.98874 1.21261 0.90316 0.89848 0.95288 0.92996 1.45751 1.11784 1.12417 1.65670 1.18709 0.88172 0.82513 0.77138 1.90830 1.21165 1.77911 1.55312 1.20451 0.94900 0.95693 1.08256 1.21572 0.89905 1.01100 0.96082 1.21559 1.01113 0.93366 0.99011 1.21702 0.95340 0.96845 0.94880 1.21687 0.93020 1.00522 1.02903 1.18981 0.84238 0.91585 0.96006 1.84729 1.23667 1.81479 1.41769 1.21271 0.92131 0.90146 0.94591 0.92734 0.93139 0.93611 0.88075 0.93391 0.89169 0.88901 0.74650 0.82767 0.81482 0.81682 0.83433 0.73704 0.95783 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.53 13.97 21.65 0.30 -63.23 16 2 C -0.04 -2.29 5.23 84.86 0.44 -1.84 16 3 Si 0.96 47.51 24.34 68.60 1.67 49.18 16 4 H -0.26 -11.92 6.62 99.48 0.66 -11.26 16 5 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 6 H -0.26 -11.94 6.63 99.48 0.66 -11.28 16 7 C -0.26 -16.15 10.03 84.03 0.84 -15.31 16 8 H 0.03 2.22 8.06 -2.91 -0.02 2.19 16 9 N -0.62 -31.07 2.77 -699.17 -1.94 -33.01 16 10 C 0.11 4.69 4.20 86.36 0.36 5.05 16 11 C -0.13 -3.96 6.08 30.66 0.19 -3.78 16 12 C -0.10 -2.67 5.36 30.62 0.16 -2.50 16 13 C 0.14 4.78 2.60 45.07 0.12 4.90 16 14 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 15 N -0.70 -19.01 5.03 -445.33 -2.24 -21.25 16 16 C 0.55 17.84 7.73 86.70 0.67 18.51 16 17 O -0.57 -25.08 14.82 16.91 0.25 -24.83 16 18 C -0.19 -4.67 5.89 -20.01 -0.12 -4.79 16 19 C -0.07 -1.03 9.54 22.52 0.21 -0.81 16 20 C -0.13 -1.36 10.02 22.24 0.22 -1.14 16 21 C -0.07 -0.75 10.03 22.30 0.22 -0.53 16 22 C -0.16 -2.72 9.98 22.34 0.22 -2.50 16 23 C 0.14 3.42 6.72 22.84 0.15 3.58 16 24 O -0.50 -14.73 11.58 -68.70 -0.80 -15.53 16 25 C 0.15 6.31 6.09 86.36 0.53 6.83 16 26 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 27 H 0.05 2.34 4.49 -2.39 -0.01 2.33 16 28 H 0.05 1.75 7.08 -2.39 -0.02 1.73 16 29 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.41 7.28 6.63 -92.71 -0.62 6.66 16 34 H 0.15 1.42 6.40 -2.91 -0.02 1.40 16 35 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 36 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 37 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.40 8.85 9.06 -74.05 -0.67 8.17 16 39 H 0.02 1.22 7.93 -2.39 -0.02 1.20 16 40 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -87.65 322.80 1.18 -86.47 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -0.31 Total: 16.51 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 4.23 Total: 5.68 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -3.87 Total: -117.48 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.54 Total: -40.35 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.67 Total: 49.18 kcal Total: -87.65 1.18 -86.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006777533.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.903 kcal (2) G-P(sol) polarization free energy of solvation -87.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds