Wall clock time and date at job start Tue Mar 31 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00144 * 2 1 4 4 H 1.48500 * 109.47058 * 269.99989 * 3 2 1 5 5 H 1.48496 * 109.46813 * 29.99998 * 3 2 1 6 6 H 1.48501 * 109.46801 * 150.00093 * 3 2 1 7 7 C 1.38809 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00338 * 197.35646 * 7 2 1 9 9 N 1.36942 * 120.00069 * 17.36071 * 7 2 1 10 10 C 1.46928 * 120.62760 * 27.67695 * 9 7 2 11 11 C 1.53191 * 108.77295 * 126.39590 * 10 9 7 12 12 C 1.53045 * 109.31493 * 54.63067 * 11 10 9 13 13 C 1.53031 * 109.53790 * 298.63592 * 12 11 10 14 14 H 1.08999 * 109.50325 * 301.37647 * 13 12 11 15 15 N 1.46507 * 109.49706 * 181.31477 * 13 12 11 16 16 C 1.34777 * 120.00219 * 155.06671 * 15 13 12 17 17 O 1.21587 * 119.99648 * 0.02562 * 16 15 13 18 18 C 1.47532 * 120.00007 * 180.02562 * 16 15 13 19 19 C 1.39712 * 120.19239 * 359.97438 * 18 16 15 20 20 C 1.37784 * 119.90710 * 179.97438 * 19 18 16 21 21 C 1.38547 * 120.30241 * 359.97438 * 20 19 18 22 22 C 1.38055 * 120.38816 * 0.02562 * 21 20 19 23 23 C 1.38709 * 120.08873 * 359.97438 * 22 21 20 24 24 O 1.35648 * 120.15310 * 179.97438 * 23 22 21 25 25 C 1.46932 * 120.60637 * 207.65967 * 9 7 2 26 26 H 0.97001 * 119.99729 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.58491 * 6.60784 * 10 9 7 28 28 H 1.08997 * 109.70116 * 246.25020 * 10 9 7 29 29 H 1.09002 * 109.49668 * 294.68347 * 11 10 9 30 30 H 1.08997 * 109.52628 * 174.60532 * 11 10 9 31 31 H 1.09002 * 109.45957 * 178.61375 * 12 11 10 32 32 H 1.09000 * 109.45552 * 58.66049 * 12 11 10 33 33 H 0.97004 * 119.99586 * 335.06605 * 15 13 12 34 34 H 1.08003 * 120.04342 * 0.25601 * 19 18 16 35 35 H 1.07996 * 119.84879 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.80654 * 180.02562 * 21 20 19 37 37 H 1.08002 * 119.96047 * 180.02562 * 22 21 20 38 38 H 0.96702 * 114.00290 * 90.00478 * 24 23 22 39 39 H 1.08996 * 109.56009 * 113.80025 * 25 9 7 40 40 H 1.09004 * 109.61335 * 353.37884 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0533 -1.2236 0.2785 9 7 1.3723 -2.3609 -0.3549 10 6 0.2278 -2.3338 -1.2759 11 6 0.5009 -3.3031 -2.4303 12 6 0.8190 -4.6886 -1.8635 13 6 2.0746 -4.6092 -0.9922 14 1 2.9086 -4.2393 -1.5886 15 7 2.3963 -5.9419 -0.4755 16 6 3.6630 -6.2416 -0.1262 17 8 4.5387 -5.4057 -0.2395 18 6 3.9870 -7.5837 0.3936 19 6 2.9837 -8.5470 0.5260 20 6 3.2930 -9.7988 1.0116 21 6 4.5953 -10.1077 1.3693 22 6 5.5963 -9.1653 1.2436 23 6 5.3031 -7.9001 0.7565 24 8 6.2855 -6.9730 0.6329 25 6 1.8201 -3.6546 0.1786 26 1 -0.4850 0.8401 0.0004 27 1 0.0985 -1.3252 -1.6684 28 1 -0.6757 -2.6393 -0.7483 29 1 1.3496 -2.9449 -3.0131 30 1 -0.3794 -3.3650 -3.0700 31 1 0.9896 -5.3861 -2.6836 32 1 -0.0201 -5.0357 -1.2606 33 1 1.6975 -6.6085 -0.3847 34 1 1.9680 -8.3121 0.2437 35 1 2.5168 -10.5428 1.1131 36 1 4.8288 -11.0916 1.7486 37 1 6.6093 -9.4137 1.5240 38 1 6.7307 -6.9836 -0.2255 39 1 1.0480 -4.0690 0.8268 40 1 2.7411 -3.5177 0.7453 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006777536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:54 Heat of formation + Delta-G solvation = -30.321694 kcal Electronic energy + Delta-G solvation = -23035.248893 eV Core-core repulsion = 19622.663653 eV Total energy + Delta-G solvation = -3412.585240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.45713 -38.79355 -37.14450 -36.77834 -34.25754 -32.55710 -31.38307 -30.42857 -29.98904 -28.43224 -25.25482 -24.16393 -22.79877 -22.12061 -21.75203 -20.20077 -19.46574 -18.48843 -17.46900 -16.75669 -16.11866 -15.76210 -15.15997 -15.04179 -14.67770 -14.62390 -14.21897 -13.91090 -13.51979 -13.36072 -13.06411 -12.54621 -12.37962 -12.36960 -12.33298 -11.90102 -11.79640 -11.06498 -10.89360 -10.78165 -10.76834 -10.23912 -10.18965 -9.88612 -9.87300 -9.60355 -9.42954 -9.28358 -8.91892 -8.74862 -8.36084 -6.64251 -5.74878 -3.16809 0.64589 1.00591 2.91005 3.33842 3.43328 3.49558 3.52905 3.67063 4.07417 4.54149 4.55253 4.62640 4.75077 5.08127 5.11503 5.30121 5.40440 5.49930 5.56022 5.58989 5.64553 5.73452 5.94288 6.06190 6.10767 6.11943 6.18593 6.26187 6.47063 6.54571 6.63106 6.70207 6.72467 6.87370 7.03410 7.38070 7.61216 7.67186 7.77247 7.87358 8.45769 8.52003 9.26004 9.88140 10.43667 11.33901 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024284 B = 0.003804 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.749857 B = 7359.778289 C = 8094.738401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.127 3.873 14 H 0.086 0.914 15 N -0.719 5.719 16 C 0.551 3.449 17 O -0.517 6.517 18 C -0.159 4.159 19 C -0.072 4.072 20 C -0.140 4.140 21 C -0.083 4.083 22 C -0.159 4.159 23 C 0.167 3.833 24 O -0.476 6.476 25 C 0.142 3.858 26 H 0.253 0.747 27 H 0.089 0.911 28 H 0.019 0.981 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.392 0.608 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.395 0.605 39 H 0.017 0.983 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.817 -21.823 -1.845 22.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.022 3.978 14 H 0.105 0.895 15 N -0.371 5.371 16 C 0.337 3.663 17 O -0.393 6.393 18 C -0.163 4.163 19 C -0.091 4.091 20 C -0.158 4.158 21 C -0.101 4.101 22 C -0.177 4.177 23 C 0.120 3.880 24 O -0.287 6.287 25 C 0.014 3.986 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.226 0.774 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.253 0.747 39 H 0.035 0.965 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.198 -20.859 -1.349 21.540 hybrid contribution 0.093 0.330 -0.340 0.483 sum 5.291 -20.529 -1.689 21.267 Atomic orbital electron populations 1.70042 1.05234 1.25448 1.54217 1.25016 0.95299 0.98383 1.00936 0.86262 0.79209 0.83496 0.77716 1.21416 1.21796 1.20336 1.19263 0.92880 0.84706 1.41091 0.91484 1.44009 1.35576 1.01053 1.50404 1.20836 0.88569 0.98588 0.87858 1.22181 1.00434 0.95167 1.00139 1.21679 0.96744 0.98622 0.98234 1.21748 0.97790 0.81108 0.97157 0.89544 1.46082 1.08978 1.15862 1.66160 1.18024 0.83080 0.86762 0.78414 1.90837 1.46762 1.48986 1.52734 1.20603 0.94737 0.95473 1.05497 1.21286 0.98500 0.92720 0.96606 1.21093 0.96906 0.96818 1.00972 1.21198 0.92617 0.99142 0.97188 1.21465 1.00736 0.92379 1.03125 1.18546 0.87213 0.87532 0.94713 1.84771 1.49172 1.55270 1.39493 1.21190 0.97975 0.86788 0.92616 0.93695 0.89246 0.96334 0.92414 0.92712 0.93114 0.92267 0.77382 0.85198 0.85234 0.85297 0.84850 0.74712 0.96530 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 11.19 55.49 0.62 -26.03 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 22.44 29.59 -169.99 -5.03 17.41 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -7.19 9.58 -15.06 -0.14 -7.33 16 8 H 0.07 1.95 7.89 -52.49 -0.41 1.54 16 9 N -0.59 -15.28 3.00 -172.31 -0.52 -15.79 16 10 C 0.17 4.00 5.31 -3.71 -0.02 3.98 16 11 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 12 C -0.11 -1.86 5.35 -26.69 -0.14 -2.00 16 13 C 0.13 2.34 2.60 -67.81 -0.18 2.16 16 14 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 15 N -0.72 -10.79 5.03 -54.73 -0.28 -11.07 16 16 C 0.55 9.06 7.73 -12.47 -0.10 8.96 16 17 O -0.52 -10.60 14.82 -16.59 -0.25 -10.85 16 18 C -0.16 -2.08 5.89 -104.84 -0.62 -2.70 16 19 C -0.07 -0.70 9.54 -39.20 -0.37 -1.08 16 20 C -0.14 -1.11 10.02 -39.63 -0.40 -1.51 16 21 C -0.08 -0.65 10.03 -39.53 -0.40 -1.04 16 22 C -0.16 -1.50 9.98 -39.47 -0.39 -1.89 16 23 C 0.17 2.08 6.72 -38.69 -0.26 1.82 16 24 O -0.48 -6.46 11.58 -40.52 -0.47 -6.93 16 25 C 0.14 3.20 6.09 -3.71 -0.02 3.18 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.39 4.53 6.63 -40.82 -0.27 4.26 16 34 H 0.13 0.99 6.40 -52.48 -0.34 0.65 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.39 3.77 9.06 45.56 0.41 4.18 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 1.44 7.93 -51.93 -0.41 1.03 16 LS Contribution 329.22 15.07 4.96 4.96 Total: -1.00 -34.60 329.22 -8.91 -43.51 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.67 Total: 5.05 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -3.29 Total: -0.26 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.17 Total: -52.89 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.71 Total: -17.78 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.60 -8.91 -43.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006777536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.189 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds