Wall clock time and date at job start Tue Mar 31 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00171 * 2 1 4 4 H 1.48504 * 109.47071 * 270.00057 * 3 2 1 5 5 H 1.48507 * 109.47079 * 29.99965 * 3 2 1 6 6 H 1.48500 * 109.47335 * 149.99766 * 3 2 1 7 7 C 1.37880 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00325 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47110 * 175.83811 * 9 7 2 11 11 C 1.46901 * 110.99840 * 75.59057 * 10 9 7 12 12 C 1.50703 * 109.47171 * 189.99843 * 11 10 9 13 13 C 1.38359 * 120.34620 * 270.01585 * 12 11 10 14 14 N 1.31932 * 121.09610 * 179.97438 * 13 12 11 15 15 C 1.31690 * 121.87891 * 0.02562 * 14 13 12 16 16 C 1.39572 * 120.56095 * 359.97438 * 15 14 13 17 17 C 1.47721 * 120.56353 * 179.97438 * 16 15 14 18 18 O 1.21472 * 120.00097 * 180.02562 * 17 16 15 19 19 O 1.34708 * 119.99871 * 0.02562 * 17 16 15 20 20 C 1.38338 * 120.34761 * 89.99919 * 12 11 10 21 21 C 1.46904 * 110.99915 * 199.53710 * 10 9 7 22 22 C 1.53001 * 109.47092 * 71.27973 * 21 10 9 23 23 C 1.53006 * 117.49753 * 244.21175 * 22 21 10 24 24 C 1.52991 * 117.50318 * 175.54978 * 22 21 10 25 25 H 0.97004 * 120.00054 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46550 * 55.84278 * 9 7 2 27 27 H 1.09000 * 109.47414 * 295.84363 * 9 7 2 28 28 H 1.08999 * 109.47522 * 69.99340 * 11 10 9 29 29 H 1.09007 * 109.46850 * 309.99654 * 11 10 9 30 30 H 1.08004 * 119.45310 * 359.96289 * 13 12 11 31 31 H 1.07994 * 119.71801 * 179.97438 * 15 14 13 32 32 H 0.96704 * 116.99837 * 180.02562 * 19 17 16 33 33 H 1.08006 * 120.85866 * 0.28791 * 20 12 11 34 34 H 1.09007 * 109.47314 * 191.27396 * 21 10 9 35 35 H 1.08990 * 109.47332 * 311.27558 * 21 10 9 36 36 H 1.09004 * 115.54795 * 29.86966 * 22 21 10 37 37 H 1.09000 * 117.49644 * 359.97438 * 23 22 21 38 38 H 1.08992 * 117.49898 * 145.01974 * 23 22 21 39 39 H 1.08998 * 117.50419 * 214.97792 * 24 22 21 40 40 H 1.09004 * 117.49832 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2024 -3.6140 -0.0984 11 6 2.8864 -3.8388 1.1820 12 6 4.0185 -4.8133 0.9824 13 6 3.8041 -6.1727 1.1252 14 7 4.7843 -7.0389 0.9534 15 6 6.0046 -6.6553 0.6406 16 6 6.3033 -5.3016 0.4784 17 6 7.6723 -4.8711 0.1281 18 8 7.9210 -3.6902 -0.0101 19 8 8.6449 -5.7882 -0.0379 20 6 5.2829 -4.3581 0.6541 21 6 1.5329 -4.8376 -0.5595 22 6 1.1638 -4.6911 -2.0371 23 6 -0.3232 -4.6929 -2.3974 24 6 0.5481 -5.9053 -2.7352 25 1 -0.4850 0.8401 0.0004 26 1 0.5693 -2.5259 -0.8484 27 1 0.6817 -2.5893 0.9268 28 1 2.1797 -4.2460 1.9050 29 1 3.2821 -2.8934 1.5535 30 1 2.8179 -6.5307 1.3818 31 1 6.7808 -7.3944 0.5086 32 1 9.5248 -5.4585 -0.2663 33 1 5.4794 -3.3021 0.5406 34 1 2.2038 -5.6877 -0.4352 35 1 0.6285 -4.9998 0.0265 36 1 1.8234 -4.0531 -2.6254 37 1 -1.0385 -4.7988 -1.5817 38 1 -0.6418 -4.0565 -3.2229 39 1 0.8022 -6.0660 -3.7829 40 1 0.4062 -6.8087 -2.1420 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:41 Heat of formation + Delta-G solvation = -26.929848 kcal Electronic energy + Delta-G solvation = -22757.051424 eV Core-core repulsion = 19344.613265 eV Total energy + Delta-G solvation = -3412.438159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.80589 -39.58994 -37.79195 -36.24794 -35.67124 -32.97520 -32.47862 -31.63001 -27.72190 -26.91188 -25.28855 -24.22164 -22.59583 -22.00590 -21.54650 -20.70445 -19.63753 -18.24865 -17.38661 -16.69094 -16.43004 -16.16191 -15.79965 -15.48231 -14.86844 -14.48448 -14.19021 -13.88956 -13.48344 -13.42927 -13.14583 -13.08206 -12.45715 -12.07933 -11.97445 -11.74903 -11.50961 -11.26865 -11.18988 -10.91035 -10.83598 -10.66716 -10.62419 -10.09095 -9.90578 -9.83839 -9.53412 -9.40121 -9.30803 -8.97096 -8.43381 -7.39057 -6.04152 -4.05498 0.45932 1.22807 2.43711 2.80935 3.31838 3.38220 3.41921 3.73188 4.18565 4.30969 4.41758 4.67386 4.77020 4.82377 4.97681 5.06299 5.19075 5.28935 5.30503 5.32553 5.53671 5.63538 5.80290 5.88100 5.92145 5.97968 6.03216 6.16668 6.23302 6.27106 6.28052 6.42605 6.45926 6.55254 6.74788 7.17729 7.28480 7.68960 7.77089 7.81494 8.04810 8.11252 8.47529 9.01669 9.58931 11.06164 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.005326 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.941052 B = 5255.852055 C = 6990.041293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.528 5.528 11 C 0.100 3.900 12 C -0.121 4.121 13 C 0.133 3.867 14 N -0.493 5.493 15 C 0.148 3.852 16 C -0.185 4.185 17 C 0.533 3.467 18 O -0.507 6.507 19 O -0.514 6.514 20 C 0.011 3.989 21 C 0.080 3.920 22 C -0.129 4.129 23 C -0.177 4.177 24 C -0.189 4.189 25 H 0.261 0.739 26 H 0.043 0.957 27 H -0.010 1.010 28 H 0.038 0.962 29 H 0.098 0.902 30 H 0.159 0.841 31 H 0.166 0.834 32 H 0.414 0.586 33 H 0.153 0.847 34 H 0.063 0.937 35 H 0.027 0.973 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.270 -13.944 0.427 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.252 5.252 11 C -0.029 4.029 12 C -0.123 4.123 13 C -0.023 4.023 14 N -0.201 5.201 15 C -0.011 4.011 16 C -0.189 4.189 17 C 0.376 3.624 18 O -0.395 6.395 19 O -0.326 6.326 20 C -0.015 4.015 21 C -0.048 4.048 22 C -0.148 4.148 23 C -0.214 4.214 24 C -0.227 4.227 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.008 0.992 28 H 0.057 0.943 29 H 0.116 0.884 30 H 0.176 0.824 31 H 0.184 0.816 32 H 0.273 0.727 33 H 0.170 0.830 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.129 0.871 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.941 -14.384 0.259 16.938 hybrid contribution 0.493 1.927 0.199 1.998 sum 9.433 -12.458 0.457 15.633 Atomic orbital electron populations 1.69951 1.06010 1.26745 1.51007 1.24953 0.94817 0.99190 0.95452 0.86554 0.79772 0.83263 0.78169 1.20672 1.21370 1.19818 1.21151 0.93484 0.89897 1.50017 0.91959 1.19801 0.90021 0.86883 0.96411 1.62161 1.32154 1.04992 1.25919 1.20956 0.92275 0.97576 0.92074 1.21086 0.95897 0.95818 0.99517 1.23027 0.97975 0.89193 0.92136 1.67784 1.00370 1.38672 1.13272 1.23082 0.94010 0.92989 0.91048 1.20059 0.91501 0.96177 1.11142 1.20677 0.85299 0.83293 0.73099 1.90931 1.82845 1.18587 1.47177 1.84535 1.22978 1.42370 1.82689 1.21713 0.90382 1.00810 0.88631 1.21706 0.96490 0.93536 0.93090 1.22211 0.95847 1.00112 0.96583 1.22972 0.94285 1.00698 1.03408 1.22947 1.06095 0.92862 1.00786 0.92954 0.93907 0.99230 0.94349 0.88367 0.82415 0.81639 0.72685 0.82973 0.91870 0.95470 0.87126 0.89179 0.89135 0.89370 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.66 8.60 -34.44 -0.30 -13.95 16 8 H 0.06 1.67 7.66 -52.49 -0.40 1.27 16 9 C 0.19 4.72 4.59 -4.98 -0.02 4.70 16 10 N -0.53 -10.45 4.38 -237.51 -1.04 -11.49 16 11 C 0.10 1.71 4.96 -4.97 -0.02 1.69 16 12 C -0.12 -1.78 4.94 -104.54 -0.52 -2.30 16 13 C 0.13 1.76 9.02 -17.46 -0.16 1.60 16 14 N -0.49 -6.53 10.35 -12.89 -0.13 -6.66 16 15 C 0.15 1.78 10.79 -17.12 -0.18 1.59 16 16 C -0.19 -2.45 5.89 -104.84 -0.62 -3.07 16 17 C 0.53 6.73 8.28 34.61 0.29 7.02 16 18 O -0.51 -8.06 17.21 -19.24 -0.33 -8.39 16 19 O -0.51 -4.42 12.71 -40.51 -0.51 -4.94 16 20 C 0.01 0.16 9.39 -38.86 -0.37 -0.21 16 21 C 0.08 1.36 5.08 -3.82 -0.02 1.34 16 22 C -0.13 -2.17 4.94 -90.62 -0.45 -2.61 16 23 C -0.18 -2.77 9.96 -26.69 -0.27 -3.03 16 24 C -0.19 -2.60 10.25 -26.70 -0.27 -2.87 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.04 1.13 6.91 -51.93 -0.36 0.77 16 27 H -0.01 -0.26 8.00 -51.93 -0.42 -0.68 16 28 H 0.04 0.62 8.07 -51.93 -0.42 0.20 16 29 H 0.10 1.84 7.27 -51.92 -0.38 1.46 16 30 H 0.16 1.81 7.74 -52.48 -0.41 1.40 16 31 H 0.17 1.56 7.62 -52.49 -0.40 1.16 16 32 H 0.41 1.70 9.11 45.56 0.42 2.12 16 33 H 0.15 2.43 7.74 -52.48 -0.41 2.02 16 34 H 0.06 0.96 5.18 -51.92 -0.27 0.70 16 35 H 0.03 0.46 7.80 -51.93 -0.40 0.06 16 36 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 37 H 0.09 1.41 8.03 -51.93 -0.42 0.99 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 342.96 15.07 5.17 5.17 Total: -1.00 -31.50 342.96 -8.82 -40.32 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.69 Total: 3.48 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -3.00 Total: -8.63 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.44 Total: -43.41 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.85 Total: -13.33 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.50 -8.82 -40.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.390 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds