Wall clock time and date at job start Tue Mar 31 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00171 * 2 1 4 4 H 1.48504 * 109.47071 * 270.00057 * 3 2 1 5 5 H 1.48507 * 109.47079 * 29.99965 * 3 2 1 6 6 H 1.48500 * 109.47335 * 149.99766 * 3 2 1 7 7 C 1.37880 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00325 * 359.97438 * 7 2 1 10 10 N 1.46893 * 109.47110 * 175.83811 * 9 7 2 11 11 C 1.46901 * 110.99840 * 75.59057 * 10 9 7 12 12 C 1.50703 * 109.47171 * 189.99843 * 11 10 9 13 13 C 1.38359 * 120.34620 * 270.01585 * 12 11 10 14 14 N 1.31932 * 121.09610 * 179.97438 * 13 12 11 15 15 C 1.31690 * 121.87891 * 0.02562 * 14 13 12 16 16 C 1.39572 * 120.56095 * 359.97438 * 15 14 13 17 17 C 1.47721 * 120.56353 * 179.97438 * 16 15 14 18 18 O 1.21472 * 120.00097 * 180.02562 * 17 16 15 19 19 O 1.34708 * 119.99871 * 0.02562 * 17 16 15 20 20 C 1.38338 * 120.34761 * 89.99919 * 12 11 10 21 21 C 1.46904 * 110.99915 * 199.53710 * 10 9 7 22 22 C 1.53001 * 109.47092 * 71.27973 * 21 10 9 23 23 C 1.53006 * 117.49753 * 244.21175 * 22 21 10 24 24 C 1.52991 * 117.50318 * 175.54978 * 22 21 10 25 25 H 0.97004 * 120.00054 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46550 * 55.84278 * 9 7 2 27 27 H 1.09000 * 109.47414 * 295.84363 * 9 7 2 28 28 H 1.08999 * 109.47522 * 69.99340 * 11 10 9 29 29 H 1.09007 * 109.46850 * 309.99654 * 11 10 9 30 30 H 1.08004 * 119.45310 * 359.96289 * 13 12 11 31 31 H 1.07994 * 119.71801 * 179.97438 * 15 14 13 32 32 H 0.96704 * 116.99837 * 180.02562 * 19 17 16 33 33 H 1.08006 * 120.85866 * 0.28791 * 20 12 11 34 34 H 1.09007 * 109.47314 * 191.27396 * 21 10 9 35 35 H 1.08990 * 109.47332 * 311.27558 * 21 10 9 36 36 H 1.09004 * 115.54795 * 29.86966 * 22 21 10 37 37 H 1.09000 * 117.49644 * 359.97438 * 23 22 21 38 38 H 1.08992 * 117.49898 * 145.01974 * 23 22 21 39 39 H 1.08998 * 117.50419 * 214.97792 * 24 22 21 40 40 H 1.09004 * 117.49832 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2024 -3.6140 -0.0984 11 6 2.8864 -3.8388 1.1820 12 6 4.0185 -4.8133 0.9824 13 6 3.8041 -6.1727 1.1252 14 7 4.7843 -7.0389 0.9534 15 6 6.0046 -6.6553 0.6406 16 6 6.3033 -5.3016 0.4784 17 6 7.6723 -4.8711 0.1281 18 8 7.9210 -3.6902 -0.0101 19 8 8.6449 -5.7882 -0.0379 20 6 5.2829 -4.3581 0.6541 21 6 1.5329 -4.8376 -0.5595 22 6 1.1638 -4.6911 -2.0371 23 6 -0.3232 -4.6929 -2.3974 24 6 0.5481 -5.9053 -2.7352 25 1 -0.4850 0.8401 0.0004 26 1 0.5693 -2.5259 -0.8484 27 1 0.6817 -2.5893 0.9268 28 1 2.1797 -4.2460 1.9050 29 1 3.2821 -2.8934 1.5535 30 1 2.8179 -6.5307 1.3818 31 1 6.7808 -7.3944 0.5086 32 1 9.5248 -5.4585 -0.2663 33 1 5.4794 -3.3021 0.5406 34 1 2.2038 -5.6877 -0.4352 35 1 0.6285 -4.9998 0.0265 36 1 1.8234 -4.0531 -2.6254 37 1 -1.0385 -4.7988 -1.5817 38 1 -0.6418 -4.0565 -3.2229 39 1 0.8022 -6.0660 -3.7829 40 1 0.4062 -6.8087 -2.1420 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601067607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:41 Heat of formation + Delta-G solvation = -47.835753 kcal Electronic energy + Delta-G solvation = -22757.957972 eV Core-core repulsion = 19344.613265 eV Total energy + Delta-G solvation = -3413.344707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.84544 -40.62390 -39.16147 -37.15863 -37.04322 -34.83184 -33.71419 -32.93552 -29.52927 -28.28184 -26.33068 -25.87340 -23.92974 -23.16720 -22.91952 -21.91364 -21.05152 -19.21437 -18.51605 -18.41232 -17.65704 -17.27929 -16.97839 -16.77298 -16.50893 -15.98835 -15.60462 -15.23032 -14.67238 -14.60737 -14.39104 -14.20528 -14.09154 -13.57834 -13.35589 -13.07051 -13.04780 -12.64386 -12.58845 -12.53525 -12.33824 -12.23516 -12.01458 -11.81115 -11.40682 -11.14404 -10.94400 -10.73793 -10.60172 -10.53135 -10.14036 -9.01565 -8.17610 -6.25915 -0.58095 0.11797 1.39821 1.40805 1.43240 1.51318 1.93502 2.40200 2.65788 2.95000 3.14646 3.31459 3.39726 3.59589 3.75191 3.84954 3.93310 3.98717 4.07941 4.16110 4.27853 4.53612 4.54588 4.58569 4.67976 4.79414 4.81169 4.86477 4.95422 5.04774 5.17394 5.24684 5.28001 5.34772 5.42601 5.46035 5.51456 5.69091 6.10657 6.36379 6.62892 6.73317 6.89291 6.92999 7.42939 8.92339 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011292 B = 0.005326 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.941052 B = 5255.852055 C = 6990.041293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.212 3.788 10 N -0.537 5.537 11 C 0.104 3.896 12 C -0.130 4.130 13 C 0.143 3.857 14 N -0.497 5.497 15 C 0.164 3.836 16 C -0.191 4.191 17 C 0.543 3.457 18 O -0.548 6.548 19 O -0.495 6.495 20 C -0.002 4.002 21 C 0.086 3.914 22 C -0.156 4.156 23 C -0.189 4.189 24 C -0.152 4.152 25 H 0.263 0.737 26 H 0.018 0.982 27 H -0.035 1.035 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.179 0.821 31 H 0.199 0.801 32 H 0.437 0.563 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.703 -16.240 0.251 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.086 3.914 10 N -0.261 5.261 11 C -0.024 4.024 12 C -0.132 4.132 13 C -0.013 4.013 14 N -0.205 5.205 15 C 0.005 3.995 16 C -0.194 4.194 17 C 0.387 3.613 18 O -0.440 6.440 19 O -0.309 6.309 20 C -0.028 4.028 21 C -0.042 4.042 22 C -0.175 4.175 23 C -0.226 4.226 24 C -0.189 4.189 25 H 0.072 0.928 26 H 0.036 0.964 27 H -0.017 1.017 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.196 0.804 31 H 0.216 0.784 32 H 0.299 0.701 33 H 0.149 0.851 34 H 0.104 0.896 35 H 0.045 0.955 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.415 -16.720 0.079 19.699 hybrid contribution 0.130 2.540 0.246 2.555 sum 10.545 -14.181 0.325 17.675 Atomic orbital electron populations 1.70061 1.07392 1.27608 1.52055 1.25742 0.95607 1.02559 0.95162 0.85570 0.78683 0.79262 0.78236 1.20301 1.20720 1.19231 1.21464 0.93415 0.91327 1.49445 0.92484 1.19369 0.89961 0.88092 0.93940 1.62030 1.31206 1.05317 1.27594 1.20826 0.93107 0.97400 0.91074 1.20768 0.94846 0.96082 1.01536 1.23245 0.98993 0.88194 0.90891 1.67912 1.00716 1.38280 1.13585 1.23571 0.94271 0.92856 0.88776 1.20118 0.91600 0.96418 1.11259 1.20527 0.85653 0.82933 0.72148 1.90926 1.83496 1.20354 1.49189 1.84473 1.23758 1.40900 1.81769 1.21633 0.91344 1.00414 0.89440 1.21732 0.96704 0.92702 0.93086 1.22159 0.96129 1.02688 0.96527 1.22995 0.93670 1.02571 1.03401 1.23033 1.02156 0.92087 1.01604 0.92836 0.96361 1.01698 0.93191 0.90841 0.80405 0.78404 0.70079 0.85073 0.89590 0.95468 0.89638 0.89435 0.89632 0.87700 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 2 C 0.01 0.42 5.46 84.66 0.46 0.89 16 3 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.52 -28.95 8.60 25.60 0.22 -28.73 16 8 H 0.06 3.18 7.66 -2.91 -0.02 3.15 16 9 C 0.21 10.85 4.59 85.56 0.39 11.25 16 10 N -0.54 -21.88 4.38 -905.35 -3.96 -25.85 16 11 C 0.10 3.66 4.96 85.56 0.42 4.09 16 12 C -0.13 -3.78 4.94 -19.81 -0.10 -3.88 16 13 C 0.14 3.46 9.02 84.71 0.76 4.23 16 14 N -0.50 -11.58 10.35 -194.71 -2.01 -13.60 16 15 C 0.16 3.41 10.79 85.04 0.92 4.33 16 16 C -0.19 -4.75 5.89 -20.00 -0.12 -4.86 16 17 C 0.54 12.85 8.28 70.33 0.58 13.43 16 18 O -0.55 -17.30 17.21 19.93 0.34 -16.96 16 19 O -0.49 -6.96 12.71 -56.18 -0.71 -7.68 16 20 C 0.00 -0.06 9.39 22.74 0.21 0.15 16 21 C 0.09 2.87 5.08 86.30 0.44 3.31 16 22 C -0.16 -5.24 4.94 -10.79 -0.05 -5.29 16 23 C -0.19 -5.91 9.96 30.62 0.31 -5.60 16 24 C -0.15 -3.81 10.25 30.62 0.31 -3.50 16 25 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 26 H 0.02 1.02 6.91 -2.39 -0.02 1.00 16 27 H -0.03 -1.90 8.00 -2.39 -0.02 -1.92 16 28 H 0.05 1.62 8.07 -2.39 -0.02 1.60 16 29 H 0.07 2.91 7.27 -2.38 -0.02 2.89 16 30 H 0.18 3.54 7.74 -2.91 -0.02 3.52 16 31 H 0.20 2.80 7.62 -2.91 -0.02 2.78 16 32 H 0.44 2.19 9.11 -74.05 -0.67 1.52 16 33 H 0.13 4.44 7.74 -2.91 -0.02 4.42 16 34 H 0.09 2.46 5.18 -2.38 -0.01 2.45 16 35 H 0.03 0.92 7.80 -2.39 -0.02 0.90 16 36 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 37 H 0.09 2.75 8.03 -2.39 -0.02 2.73 16 38 H 0.09 2.70 8.14 -2.39 -0.02 2.69 16 39 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -69.72 342.96 1.11 -68.61 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.39 Total: 13.94 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 4.77 Total: -10.20 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -5.69 Total: -94.53 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.37 Total: -24.63 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -69.72 1.11 -68.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.773 kcal (2) G-P(sol) polarization free energy of solvation -69.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds