Wall clock time and date at job start Tue Mar 31 2020 06:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.52064 * 2 1 4 4 O 1.21283 * 119.99753 * 240.12042 * 3 2 1 5 5 N 1.34773 * 120.00383 * 60.12700 * 3 2 1 6 6 C 1.39470 * 120.00219 * 175.31465 * 5 3 2 7 7 C 1.38593 * 119.57674 * 186.37392 * 6 5 3 8 8 C 1.40814 * 118.79434 * 179.97438 * 7 6 5 9 9 C 1.41538 * 120.99821 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00587 * 201.15026 * 9 8 7 11 11 C 1.40035 * 119.99845 * 21.16261 * 9 8 7 12 12 N 1.30743 * 119.99905 * 12.87331 * 11 9 8 13 13 Si 1.86800 * 119.99804 * 192.88287 * 11 9 8 14 14 H 1.48500 * 109.47522 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47135 * 119.99540 * 13 11 9 16 16 H 1.48507 * 109.46837 * 239.99511 * 13 11 9 17 17 C 1.41181 * 118.00682 * 0.02562 * 8 7 6 18 18 C 1.37589 * 119.01196 * 359.97438 * 17 8 7 19 19 N 1.32085 * 121.11156 * 359.72745 * 18 17 8 20 20 C 1.53182 * 109.57435 * 239.84212 * 2 1 3 21 21 C 1.53176 * 109.03398 * 183.08392 * 20 2 1 22 22 C 1.53093 * 109.16636 * 56.97975 * 21 20 2 23 23 O 1.42907 * 109.41297 * 302.38841 * 22 21 20 24 24 C 1.42903 * 114.09545 * 61.16123 * 23 22 21 25 25 H 1.09002 * 109.47204 * 299.87811 * 1 2 3 26 26 H 1.09005 * 109.47399 * 59.87449 * 1 2 3 27 27 H 1.09003 * 109.47167 * 179.87423 * 1 2 3 28 28 H 0.97002 * 119.99806 * 355.31246 * 5 3 2 29 29 H 1.07999 * 120.60599 * 0.02562 * 7 6 5 30 30 H 0.97003 * 119.99526 * 180.02562 * 12 11 9 31 31 H 1.08000 * 120.49415 * 180.02562 * 17 8 7 32 32 H 1.07999 * 119.44417 * 179.97438 * 18 17 8 33 33 H 1.09000 * 109.53657 * 302.94778 * 20 2 1 34 34 H 1.08996 * 109.54304 * 63.12821 * 20 2 1 35 35 H 1.08996 * 109.52468 * 176.88596 * 21 20 2 36 36 H 1.09002 * 109.52067 * 297.07350 * 21 20 2 37 37 H 1.09001 * 109.48060 * 62.37081 * 22 21 20 38 38 H 1.08995 * 109.48140 * 182.40896 * 22 21 20 39 39 H 1.09001 * 109.48266 * 178.85908 * 24 23 22 40 40 H 1.08999 * 109.48792 * 58.81959 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0335 1.4204 0.0000 4 8 2.7293 1.8171 -0.9107 5 7 1.7108 2.2498 1.0120 6 6 2.2554 3.5328 1.0629 7 6 2.0245 4.3305 2.1725 8 6 2.5827 5.6228 2.2068 9 6 2.3771 6.4764 3.3169 10 1 2.5005 7.5438 3.2077 11 6 2.0139 5.9370 4.5571 12 7 2.1077 4.6492 4.7626 13 14 1.3950 7.0573 5.9177 14 1 1.3831 8.4618 5.4356 15 1 0.0187 6.6542 6.3032 16 1 2.2917 6.9466 7.0963 17 6 3.3535 6.0416 1.1006 18 6 3.5275 5.1784 0.0434 19 7 2.9915 3.9712 0.0526 20 6 2.0432 -0.7251 -1.2479 21 6 3.5729 -0.7855 -1.1969 22 6 4.0056 -1.4794 0.0973 23 8 3.4695 -0.7722 1.2175 24 6 2.0416 -0.7242 1.2481 25 1 -0.3634 0.5119 0.8911 26 1 -0.3634 0.5158 -0.8889 27 1 -0.3634 -1.0277 -0.0023 28 1 1.0997 1.9545 1.7051 29 1 1.4280 3.9673 2.9963 30 1 1.8558 4.2756 5.6215 31 1 3.8006 7.0246 1.0848 32 1 4.1155 5.4917 -0.8066 33 1 1.6389 -1.7370 -1.2737 34 1 1.7279 -0.1836 -2.1398 35 1 3.9440 -1.3483 -2.0534 36 1 3.9784 0.2260 -1.2211 37 1 3.6337 -2.5040 0.1024 38 1 5.0938 -1.4871 0.1594 39 1 1.7149 -0.1879 2.1390 40 1 1.6439 -1.7388 1.2681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540968708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:02 Heat of formation + Delta-G solvation = -52.192486 kcal Electronic energy + Delta-G solvation = -23683.428550 eV Core-core repulsion = 20269.894921 eV Total energy + Delta-G solvation = -3413.533629 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.58766 -38.66318 -37.34368 -34.44777 -34.25949 -33.77849 -31.95385 -30.47536 -28.46438 -26.99386 -25.98828 -25.05726 -23.57238 -21.90530 -21.85596 -20.51953 -18.96771 -17.65688 -16.91970 -16.10379 -15.78764 -15.50968 -15.19864 -14.95016 -14.30808 -14.19207 -14.10434 -13.97913 -13.64457 -12.89900 -12.75764 -12.59872 -12.53983 -12.26703 -12.12849 -11.90526 -11.84600 -11.43361 -11.15123 -10.96258 -10.87524 -10.57434 -10.42814 -10.24929 -10.07704 -9.66806 -9.51695 -9.34971 -9.03821 -7.96923 -7.67707 -6.96487 -6.73873 -4.61016 2.60432 2.79427 3.01797 3.07316 3.22727 3.45939 3.67557 3.85134 3.99707 4.54035 4.68083 4.73183 4.83232 5.03650 5.13070 5.22494 5.38149 5.42908 5.54527 5.59032 5.64979 5.73848 5.78893 5.84666 5.94577 6.03945 6.12080 6.21239 6.55501 6.65545 6.71365 6.84683 6.97337 7.18053 7.22997 7.44435 7.51909 7.82360 7.99683 8.25813 8.47332 8.73897 8.77800 8.97404 9.74584 10.07841 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.004510 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.345740 B = 6206.756637 C = 6750.203244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.519 3.481 4 O -0.477 6.477 5 N -0.655 5.655 6 C 0.338 3.662 7 C -0.247 4.247 8 C 0.139 3.861 9 C -0.450 4.450 10 H 0.081 0.919 11 C 0.075 3.925 12 N -0.789 5.789 13 Si 0.913 3.087 14 H -0.260 1.260 15 H -0.271 1.271 16 H -0.273 1.273 17 C -0.286 4.286 18 C 0.117 3.883 19 N -0.554 5.554 20 C -0.092 4.092 21 C -0.168 4.168 22 C 0.060 3.940 23 O -0.373 6.373 24 C 0.075 3.925 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.404 0.596 29 H 0.138 0.862 30 H 0.280 0.720 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.045 0.955 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 -11.769 -3.723 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C 0.304 3.696 4 O -0.347 6.347 5 N -0.300 5.300 6 C 0.114 3.886 7 C -0.272 4.272 8 C 0.131 3.869 9 C -0.482 4.482 10 H 0.100 0.900 11 C -0.143 4.143 12 N -0.415 5.415 13 Si 0.738 3.262 14 H -0.183 1.183 15 H -0.197 1.197 16 H -0.199 1.199 17 C -0.310 4.310 18 C -0.037 4.037 19 N -0.273 5.273 20 C -0.130 4.130 21 C -0.205 4.205 22 C -0.016 4.016 23 O -0.292 6.292 24 C -0.003 4.003 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.239 0.761 29 H 0.155 0.845 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.221 -12.203 -4.817 13.509 hybrid contribution -0.864 0.717 1.632 1.981 sum -4.085 -11.486 -3.185 12.600 Atomic orbital electron populations 1.21781 0.92130 1.02690 1.03103 1.21585 0.97489 0.94457 0.98862 1.20131 0.81031 0.86076 0.82405 1.90695 1.34576 1.75647 1.33807 1.43388 1.47073 1.12698 1.26841 1.18218 0.94263 0.84456 0.91713 1.21793 1.09656 0.97267 0.98526 1.17588 0.86768 0.91284 0.91299 1.19643 1.40451 0.95062 0.93008 0.90043 1.25981 0.92783 0.95453 1.00122 1.69759 1.34572 1.12730 1.24480 0.86174 0.79018 0.81172 0.79871 1.18322 1.19653 1.19856 1.21871 1.08861 1.01450 0.98826 1.21739 0.96493 0.89040 0.96437 1.67204 1.16079 1.16593 1.27397 1.21382 0.95934 0.99108 0.96552 1.22396 0.96238 1.04405 0.97484 1.22612 0.99046 0.93896 0.86081 1.88031 1.19453 1.76424 1.45247 1.22612 0.81918 0.99284 0.96469 0.91765 0.91561 0.91474 0.76124 0.84475 0.90839 0.88114 0.86038 0.91739 0.90722 0.91327 0.88142 0.93692 0.89102 0.88530 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.38 37.16 0.31 -1.17 16 2 C -0.12 -1.64 0.63 -155.52 -0.10 -1.74 16 3 C 0.52 9.95 5.87 -10.99 -0.06 9.88 16 4 O -0.48 -10.93 12.11 5.55 0.07 -10.86 16 5 N -0.65 -13.20 5.15 -11.49 -0.06 -13.26 16 6 C 0.34 8.39 7.41 -154.71 -1.15 7.24 16 7 C -0.25 -6.38 8.66 -38.48 -0.33 -6.71 16 8 C 0.14 3.71 5.65 -106.55 -0.60 3.11 16 9 C -0.45 -11.68 9.15 -37.65 -0.34 -12.03 16 10 H 0.08 2.03 7.88 -52.49 -0.41 1.61 16 11 C 0.07 1.81 5.30 -17.34 -0.09 1.72 16 12 N -0.79 -19.50 10.54 55.55 0.59 -18.92 16 13 Si 0.91 17.97 29.58 -169.99 -5.03 12.94 16 14 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 15 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 17 C -0.29 -7.16 9.90 -38.70 -0.38 -7.55 16 18 C 0.12 2.88 11.15 -17.68 -0.20 2.69 16 19 N -0.55 -14.42 7.86 -12.52 -0.10 -14.51 16 20 C -0.09 -1.17 4.46 -26.55 -0.12 -1.29 16 21 C -0.17 -2.29 5.81 -26.59 -0.15 -2.45 16 22 C 0.06 0.78 6.84 37.21 0.25 1.03 16 23 O -0.37 -5.93 10.45 -35.23 -0.37 -6.30 16 24 C 0.07 0.96 5.47 37.21 0.20 1.17 16 25 H 0.06 0.64 7.48 -51.93 -0.39 0.25 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.40 6.82 7.54 -40.82 -0.31 6.51 16 29 H 0.14 3.51 5.84 -52.49 -0.31 3.20 16 30 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 31 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.02 8.02 -51.93 -0.42 0.60 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.10 1.80 5.82 -51.93 -0.30 1.50 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.10 1.21 7.62 -51.93 -0.40 0.82 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 323.29 15.07 4.87 4.87 Total: -1.00 -31.90 323.29 -8.26 -40.17 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -5.47 Total: 11.97 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.76 Total: -6.09 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.43 Total: -46.69 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.30 Total: -17.16 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.90 -8.26 -40.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540968708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.026 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds