Wall clock time and date at job start Tue Mar 31 2020 06:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.52064 * 2 1 4 4 O 1.21283 * 119.99753 * 240.12042 * 3 2 1 5 5 N 1.34773 * 120.00383 * 60.12700 * 3 2 1 6 6 C 1.39470 * 120.00219 * 175.31465 * 5 3 2 7 7 C 1.38593 * 119.57674 * 186.37392 * 6 5 3 8 8 C 1.40814 * 118.79434 * 179.97438 * 7 6 5 9 9 C 1.41538 * 120.99821 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00587 * 201.15026 * 9 8 7 11 11 C 1.40035 * 119.99845 * 21.16261 * 9 8 7 12 12 N 1.30743 * 119.99905 * 12.87331 * 11 9 8 13 13 Si 1.86800 * 119.99804 * 192.88287 * 11 9 8 14 14 H 1.48500 * 109.47522 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47135 * 119.99540 * 13 11 9 16 16 H 1.48507 * 109.46837 * 239.99511 * 13 11 9 17 17 C 1.41181 * 118.00682 * 0.02562 * 8 7 6 18 18 C 1.37589 * 119.01196 * 359.97438 * 17 8 7 19 19 N 1.32085 * 121.11156 * 359.72745 * 18 17 8 20 20 C 1.53182 * 109.57435 * 239.84212 * 2 1 3 21 21 C 1.53176 * 109.03398 * 183.08392 * 20 2 1 22 22 C 1.53093 * 109.16636 * 56.97975 * 21 20 2 23 23 O 1.42907 * 109.41297 * 302.38841 * 22 21 20 24 24 C 1.42903 * 114.09545 * 61.16123 * 23 22 21 25 25 H 1.09002 * 109.47204 * 299.87811 * 1 2 3 26 26 H 1.09005 * 109.47399 * 59.87449 * 1 2 3 27 27 H 1.09003 * 109.47167 * 179.87423 * 1 2 3 28 28 H 0.97002 * 119.99806 * 355.31246 * 5 3 2 29 29 H 1.07999 * 120.60599 * 0.02562 * 7 6 5 30 30 H 0.97003 * 119.99526 * 180.02562 * 12 11 9 31 31 H 1.08000 * 120.49415 * 180.02562 * 17 8 7 32 32 H 1.07999 * 119.44417 * 179.97438 * 18 17 8 33 33 H 1.09000 * 109.53657 * 302.94778 * 20 2 1 34 34 H 1.08996 * 109.54304 * 63.12821 * 20 2 1 35 35 H 1.08996 * 109.52468 * 176.88596 * 21 20 2 36 36 H 1.09002 * 109.52067 * 297.07350 * 21 20 2 37 37 H 1.09001 * 109.48060 * 62.37081 * 22 21 20 38 38 H 1.08995 * 109.48140 * 182.40896 * 22 21 20 39 39 H 1.09001 * 109.48266 * 178.85908 * 24 23 22 40 40 H 1.08999 * 109.48792 * 58.81959 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0335 1.4204 0.0000 4 8 2.7293 1.8171 -0.9107 5 7 1.7108 2.2498 1.0120 6 6 2.2554 3.5328 1.0629 7 6 2.0245 4.3305 2.1725 8 6 2.5827 5.6228 2.2068 9 6 2.3771 6.4764 3.3169 10 1 2.5005 7.5438 3.2077 11 6 2.0139 5.9370 4.5571 12 7 2.1077 4.6492 4.7626 13 14 1.3950 7.0573 5.9177 14 1 1.3831 8.4618 5.4356 15 1 0.0187 6.6542 6.3032 16 1 2.2917 6.9466 7.0963 17 6 3.3535 6.0416 1.1006 18 6 3.5275 5.1784 0.0434 19 7 2.9915 3.9712 0.0526 20 6 2.0432 -0.7251 -1.2479 21 6 3.5729 -0.7855 -1.1969 22 6 4.0056 -1.4794 0.0973 23 8 3.4695 -0.7722 1.2175 24 6 2.0416 -0.7242 1.2481 25 1 -0.3634 0.5119 0.8911 26 1 -0.3634 0.5158 -0.8889 27 1 -0.3634 -1.0277 -0.0023 28 1 1.0997 1.9545 1.7051 29 1 1.4280 3.9673 2.9963 30 1 1.8558 4.2756 5.6215 31 1 3.8006 7.0246 1.0848 32 1 4.1155 5.4917 -0.8066 33 1 1.6389 -1.7370 -1.2737 34 1 1.7279 -0.1836 -2.1398 35 1 3.9440 -1.3483 -2.0534 36 1 3.9784 0.2260 -1.2211 37 1 3.6337 -2.5040 0.1024 38 1 5.0938 -1.4871 0.1594 39 1 1.7149 -0.1879 2.1390 40 1 1.6439 -1.7388 1.2681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540968708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:01 Heat of formation + Delta-G solvation = -72.559415 kcal Electronic energy + Delta-G solvation = -23684.311726 eV Core-core repulsion = 20269.894921 eV Total energy + Delta-G solvation = -3414.416805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.91865 -40.30975 -38.86773 -36.18591 -35.62864 -35.36003 -33.06702 -32.41240 -30.28239 -27.94218 -27.88662 -26.06885 -24.97040 -23.80757 -23.12951 -22.08650 -20.45047 -19.47353 -18.29467 -17.52425 -17.18490 -16.92621 -16.63963 -16.20682 -16.04857 -15.81649 -15.48032 -15.32038 -15.08757 -14.60931 -14.37263 -14.20186 -13.60226 -13.48435 -13.15287 -13.14346 -12.98278 -12.89085 -12.85118 -12.69595 -12.07243 -12.00092 -11.88193 -11.55756 -11.54125 -11.36893 -11.13768 -10.76911 -10.39164 -9.94416 -9.55338 -8.83460 -8.59603 -6.58859 0.76141 0.99819 1.40994 1.54432 1.56711 1.90510 2.17453 2.20406 2.81330 2.98415 3.47202 3.58654 3.74853 3.83746 3.93192 4.09836 4.23965 4.27012 4.47637 4.52176 4.66522 4.69633 4.72574 4.76107 4.83798 4.88443 4.90248 4.95777 5.02481 5.09805 5.20282 5.24253 5.25623 5.46038 5.50455 5.68346 5.92615 6.14967 6.25307 6.48676 6.63472 6.79964 6.83251 7.37489 7.85869 8.26267 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.004510 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.345740 B = 6206.756637 C = 6750.203244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.510 3.490 4 O -0.520 6.520 5 N -0.651 5.651 6 C 0.334 3.666 7 C -0.267 4.267 8 C 0.109 3.891 9 C -0.480 4.480 10 H 0.083 0.917 11 C 0.036 3.964 12 N -0.812 5.812 13 Si 0.991 3.009 14 H -0.259 1.259 15 H -0.260 1.260 16 H -0.266 1.266 17 C -0.302 4.302 18 C 0.110 3.890 19 N -0.579 5.579 20 C -0.091 4.091 21 C -0.168 4.168 22 C 0.058 3.942 23 O -0.411 6.411 24 C 0.070 3.930 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.417 0.583 29 H 0.135 0.865 30 H 0.292 0.708 31 H 0.115 0.885 32 H 0.147 0.853 33 H 0.107 0.893 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.441 -13.623 -2.682 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 C 0.297 3.703 4 O -0.393 6.393 5 N -0.298 5.298 6 C 0.108 3.892 7 C -0.292 4.292 8 C 0.101 3.899 9 C -0.510 4.510 10 H 0.101 0.899 11 C -0.180 4.180 12 N -0.438 5.438 13 Si 0.811 3.189 14 H -0.182 1.182 15 H -0.184 1.184 16 H -0.190 1.190 17 C -0.325 4.325 18 C -0.043 4.043 19 N -0.299 5.299 20 C -0.129 4.129 21 C -0.205 4.205 22 C -0.018 4.018 23 O -0.330 6.330 24 C -0.007 4.007 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.124 0.876 28 H 0.254 0.746 29 H 0.153 0.847 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.164 0.836 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.711 -14.094 -3.781 15.334 hybrid contribution -0.351 1.256 1.283 1.829 sum -5.062 -12.838 -2.499 14.024 Atomic orbital electron populations 1.21827 0.89439 1.05176 1.02957 1.21635 0.99451 0.90095 1.00143 1.21316 0.79915 0.88045 0.81003 1.90677 1.36323 1.76965 1.35305 1.43481 1.47073 1.11364 1.27845 1.18515 0.93580 0.86043 0.91078 1.21798 1.10711 0.97679 0.99038 1.18037 0.87404 0.92138 0.92298 1.19937 1.41870 0.95215 0.93979 0.89870 1.26879 0.92087 0.97016 1.02040 1.69789 1.33893 1.14311 1.25788 0.85017 0.78759 0.78769 0.76312 1.18204 1.18407 1.19037 1.22054 1.09345 1.02283 0.98867 1.22186 0.96263 0.88765 0.97124 1.67335 1.17134 1.17294 1.28175 1.21454 0.95153 1.00975 0.95275 1.22335 0.97137 1.01894 0.99148 1.22758 0.99206 0.95210 0.84632 1.87983 1.21251 1.77328 1.46446 1.22834 0.80751 1.01416 0.95652 0.91282 0.92487 0.87604 0.74557 0.84734 0.89648 0.86735 0.83577 0.87449 0.92248 0.89095 0.93262 0.89992 0.89318 0.88760 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.38 71.98 0.60 -1.91 16 2 C -0.11 -2.80 0.63 -52.84 -0.03 -2.83 16 3 C 0.51 19.83 5.87 87.66 0.51 20.34 16 4 O -0.52 -24.79 12.11 -3.04 -0.04 -24.83 16 5 N -0.65 -26.86 5.15 -308.66 -1.59 -28.45 16 6 C 0.33 17.15 7.41 132.75 0.98 18.13 16 7 C -0.27 -14.26 8.66 22.98 0.20 -14.06 16 8 C 0.11 6.04 5.65 -21.11 -0.12 5.92 16 9 C -0.48 -25.34 9.15 23.52 0.22 -25.12 16 10 H 0.08 4.21 7.88 -2.91 -0.02 4.19 16 11 C 0.04 1.76 5.30 85.29 0.45 2.21 16 12 N -0.81 -40.21 10.54 21.84 0.23 -39.98 16 13 Si 0.99 36.14 29.58 68.60 2.03 38.17 16 14 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 15 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 16 H -0.27 -9.32 7.11 99.48 0.71 -8.62 16 17 C -0.30 -15.60 9.90 22.84 0.23 -15.37 16 18 C 0.11 5.60 11.15 84.50 0.94 6.55 16 19 N -0.58 -31.31 7.86 -193.54 -1.52 -32.83 16 20 C -0.09 -2.11 4.46 30.71 0.14 -1.97 16 21 C -0.17 -4.43 5.81 30.68 0.18 -4.25 16 22 C 0.06 1.39 6.84 72.01 0.49 1.88 16 23 O -0.41 -12.55 10.45 -148.98 -1.56 -14.11 16 24 C 0.07 1.63 5.47 72.01 0.39 2.03 16 25 H 0.07 1.20 7.48 -2.39 -0.02 1.19 16 26 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.42 14.25 7.54 -92.71 -0.70 13.55 16 29 H 0.14 7.11 5.84 -2.91 -0.02 7.09 16 30 H 0.29 12.82 8.29 -92.71 -0.77 12.05 16 31 H 0.11 5.40 8.06 -2.91 -0.02 5.38 16 32 H 0.15 6.43 8.06 -2.91 -0.02 6.41 16 33 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.56 8.02 -2.39 -0.02 1.54 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.05 1.83 5.82 -2.39 -0.01 1.82 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.09 2.19 7.62 -2.39 -0.02 2.17 16 40 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -72.96 323.29 3.10 -69.86 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: 0.36 Total: 40.63 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 5.19 Total: -8.46 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -2.88 Total: -101.26 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.59 Total: -38.94 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.17 kcal Total: -72.96 3.10 -69.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540968708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.699 kcal (2) G-P(sol) polarization free energy of solvation -72.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds