Wall clock time and date at job start Tue Mar 31 2020 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47124 * 2 1 4 4 N 1.46491 * 109.47129 * 179.97438 * 3 2 1 5 5 C 1.36876 * 120.00308 * 270.00132 * 4 3 2 6 6 H 1.07996 * 120.00356 * 112.74314 * 5 4 3 7 7 C 1.39050 * 119.99529 * 292.75080 * 5 4 3 8 8 N 1.31365 * 119.99533 * 183.79814 * 7 5 4 9 9 Si 1.86799 * 120.00515 * 3.79546 * 7 5 4 10 10 H 1.48501 * 109.46913 * 94.58239 * 9 7 5 11 11 H 1.48498 * 109.47371 * 214.58567 * 9 7 5 12 12 H 1.48502 * 109.46884 * 334.58378 * 9 7 5 13 13 C 1.34779 * 120.00273 * 90.00101 * 4 3 2 14 14 O 1.21590 * 119.99494 * 9.88902 * 13 4 3 15 15 C 1.47737 * 120.00307 * 189.89175 * 13 4 3 16 16 C 1.39692 * 120.11449 * 341.49708 * 15 13 4 17 17 C 1.37959 * 119.98650 * 179.97438 * 16 15 13 18 18 C 1.38274 * 120.23224 * 0.04396 * 17 16 15 19 19 C 1.38969 * 120.23489 * 359.97438 * 18 17 16 20 20 N 1.39952 * 119.99646 * 180.02562 * 19 18 17 21 21 C 1.34775 * 120.00073 * 323.83009 * 20 19 18 22 22 C 1.50699 * 119.99889 * 181.15020 * 21 20 19 23 23 O 1.21284 * 120.00065 * 1.15472 * 21 20 19 24 24 C 1.38622 * 120.00486 * 359.97438 * 19 18 17 25 25 H 1.08992 * 109.47127 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47437 * 300.00625 * 1 2 3 27 27 H 1.09008 * 109.46984 * 59.99863 * 1 2 3 28 28 H 1.08999 * 109.46871 * 240.00131 * 2 1 3 29 29 H 1.09000 * 109.46563 * 119.99648 * 2 1 3 30 30 H 1.09002 * 109.46884 * 59.99847 * 3 2 1 31 31 H 1.08995 * 109.47008 * 300.00036 * 3 2 1 32 32 H 0.97006 * 119.99433 * 180.02562 * 8 7 5 33 33 H 1.08001 * 120.00839 * 0.02562 * 16 15 13 34 34 H 1.08007 * 119.88461 * 180.02562 * 17 16 15 35 35 H 1.08002 * 119.88452 * 179.97438 * 18 17 16 36 36 H 0.96998 * 119.99604 * 143.83145 * 20 19 18 37 37 H 1.09008 * 109.46881 * 60.00605 * 22 21 20 38 38 H 1.09000 * 109.46869 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47606 * 300.00339 * 22 21 20 40 40 H 1.07994 * 120.10882 * 179.73272 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1889 1.4427 1.1863 6 1 4.7719 0.5802 1.4735 7 6 4.1328 2.5533 2.0210 8 7 4.8479 2.5838 3.1225 9 14 3.0408 4.0021 1.5760 10 1 1.7271 3.8580 2.2532 11 1 3.6887 5.2638 2.0158 12 1 2.8385 4.0361 0.1052 13 6 4.1794 1.4424 -1.1663 14 8 3.5854 1.6231 -2.2117 15 6 5.6403 1.2226 -1.1752 16 6 6.3825 1.3978 -0.0048 17 6 7.7465 1.1914 -0.0160 18 6 8.3837 0.8119 -1.1830 19 6 7.6546 0.6352 -2.3528 20 7 8.3045 0.2505 -3.5310 21 6 9.5398 0.7163 -3.8021 22 6 10.2291 0.3227 -5.0831 23 8 10.0967 1.4522 -3.0151 24 6 6.2834 0.8390 -2.3524 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 4.8085 3.3585 3.7050 33 1 5.8886 1.6941 0.9088 34 1 8.3188 1.3269 0.8900 35 1 9.4519 0.6521 -1.1854 36 1 7.8658 -0.3513 -4.1525 37 1 9.6313 0.6515 -5.9333 38 1 11.2114 0.7933 -5.1265 39 1 10.3431 -0.7608 -5.1164 40 1 5.7158 0.7064 -3.2615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048953386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:23 Heat of formation + Delta-G solvation = -32.773611 kcal Electronic energy + Delta-G solvation = -23165.040605 eV Core-core repulsion = 19752.349042 eV Total energy + Delta-G solvation = -3412.691563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.26585 -39.25515 -37.40939 -35.38966 -34.53471 -33.23371 -31.71516 -30.66259 -30.33295 -28.27236 -25.97571 -25.12245 -22.82641 -21.98115 -21.14155 -20.52164 -19.20421 -17.98459 -17.12626 -16.68138 -15.77894 -15.49524 -15.32222 -14.87294 -14.31395 -14.22751 -14.05091 -13.66150 -13.54312 -13.22864 -12.97610 -12.83987 -12.61197 -12.46619 -12.25821 -11.92377 -11.61659 -11.54831 -11.23014 -11.13029 -10.91138 -10.70912 -10.43710 -10.12718 -10.00217 -9.93010 -9.71372 -9.10450 -8.65775 -8.29248 -7.62863 -7.48851 -6.53459 -4.44041 1.67145 1.87710 2.69535 3.05752 3.18037 3.19719 3.29414 3.78109 4.09141 4.37124 4.62438 4.70274 4.76847 5.06004 5.16153 5.49629 5.50280 5.55560 5.58074 5.65965 5.80160 5.92236 6.03352 6.06565 6.10450 6.27413 6.30522 6.32735 6.40503 6.55307 6.69925 6.76509 6.85932 6.89914 7.32366 7.36365 7.48393 7.51852 7.75721 8.02636 8.15822 8.20361 8.85920 9.17070 9.58579 10.48857 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.004858 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.358478 B = 5762.162407 C = 6643.682993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.105 3.895 4 N -0.472 5.472 5 C -0.349 4.349 6 H 0.105 0.895 7 C 0.073 3.927 8 N -0.861 5.861 9 Si 0.876 3.124 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.256 1.256 13 C 0.545 3.455 14 O -0.588 6.588 15 C -0.102 4.102 16 C -0.096 4.096 17 C -0.129 4.129 18 C -0.103 4.103 19 C 0.101 3.899 20 N -0.670 5.670 21 C 0.505 3.495 22 C -0.172 4.172 23 O -0.531 6.531 24 C -0.096 4.096 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.279 0.721 33 H 0.213 0.787 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.407 0.593 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 -5.852 -9.360 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.018 4.018 4 N -0.193 5.193 5 C -0.477 4.477 6 H 0.122 0.878 7 C -0.136 4.136 8 N -0.495 5.495 9 Si 0.702 3.298 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.180 1.180 13 C 0.335 3.665 14 O -0.472 6.472 15 C -0.106 4.106 16 C -0.113 4.113 17 C -0.148 4.148 18 C -0.124 4.124 19 C 0.009 3.991 20 N -0.315 5.315 21 C 0.293 3.707 22 C -0.231 4.231 23 O -0.407 6.407 24 C -0.117 4.117 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.229 0.771 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.242 0.758 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.525 -5.118 -9.154 11.064 hybrid contribution -0.690 0.396 -0.359 0.873 sum 2.836 -4.722 -9.514 10.993 Atomic orbital electron populations 1.21708 0.96329 1.01021 1.01452 1.21798 0.94837 0.98174 1.02243 1.21642 0.83100 0.96050 1.01026 1.43373 1.03728 1.66961 1.05218 1.18770 1.29872 1.02877 0.96142 0.87803 1.25635 0.95291 0.97719 0.94993 1.69630 1.37181 1.30992 1.11698 0.86736 0.80734 0.81744 0.80620 1.19651 1.20909 1.17966 1.18525 0.86675 0.77436 0.83815 1.90612 1.70501 1.53380 1.32753 1.19717 0.93904 1.03257 0.93696 1.24172 0.93159 0.91963 1.02054 1.21258 0.95339 1.00948 0.97217 1.21270 1.00027 0.99800 0.91274 1.17433 0.91359 1.04434 0.85899 1.43474 1.17467 1.48640 1.21964 1.20922 0.81199 0.79921 0.88659 1.21909 1.02341 1.03800 0.95078 1.90742 1.64586 1.35694 1.49638 1.20893 0.92345 1.00168 0.98326 0.93112 0.92894 0.93045 0.92418 0.91336 0.91884 0.91511 0.91042 0.77106 0.85875 0.85671 0.75761 0.89267 0.88828 0.89295 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.13 -2.38 6.26 -26.73 -0.17 -2.55 16 3 C 0.10 2.21 4.08 -4.05 -0.02 2.19 16 4 N -0.47 -11.08 1.74 -121.54 -0.21 -11.29 16 5 C -0.35 -8.52 6.07 -15.00 -0.09 -8.61 16 6 H 0.10 2.67 7.01 -52.49 -0.37 2.30 16 7 C 0.07 1.81 4.89 -17.45 -0.09 1.73 16 8 N -0.86 -22.14 13.91 55.50 0.77 -21.37 16 9 Si 0.88 20.09 25.46 -169.99 -4.33 15.76 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.26 -6.14 6.88 56.52 0.39 -5.75 16 13 C 0.54 13.07 7.52 -12.38 -0.09 12.97 16 14 O -0.59 -14.92 16.05 5.29 0.08 -14.84 16 15 C -0.10 -2.25 5.81 -104.99 -0.61 -2.86 16 16 C -0.10 -2.10 8.38 -39.14 -0.33 -2.43 16 17 C -0.13 -2.51 10.02 -39.67 -0.40 -2.91 16 18 C -0.10 -1.91 8.67 -39.30 -0.34 -2.25 16 19 C 0.10 1.76 6.25 -83.74 -0.52 1.24 16 20 N -0.67 -8.79 5.33 -9.89 -0.05 -8.84 16 21 C 0.51 6.66 7.74 -10.99 -0.09 6.57 16 22 C -0.17 -1.30 10.32 36.00 0.37 -0.93 16 23 O -0.53 -9.44 14.70 5.55 0.08 -9.36 16 24 C -0.10 -1.84 9.51 -38.96 -0.37 -2.21 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.33 5.46 -51.93 -0.28 1.04 16 31 H 0.07 1.44 7.31 -51.93 -0.38 1.06 16 32 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.21 5.07 3.36 -62.89 -0.21 4.86 16 34 H 0.12 2.18 8.06 -52.48 -0.42 1.76 16 35 H 0.13 2.25 6.41 -52.49 -0.34 1.91 16 36 H 0.41 3.81 8.82 -40.82 -0.36 3.45 16 37 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.13 2.25 7.76 -52.49 -0.41 1.84 16 LS Contribution 331.33 15.07 4.99 4.99 Total: -1.00 -30.42 331.33 -6.33 -36.74 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.30 Total: 10.01 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.37 Total: -1.82 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.51 Total: -41.49 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.17 Total: -24.20 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.33 Total: 15.76 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.42 -6.33 -36.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048953386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.969 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds