Wall clock time and date at job start Tue Mar 31 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47124 * 2 1 4 4 N 1.46491 * 109.47129 * 179.97438 * 3 2 1 5 5 C 1.36876 * 120.00308 * 270.00132 * 4 3 2 6 6 H 1.07996 * 120.00356 * 112.74314 * 5 4 3 7 7 C 1.39050 * 119.99529 * 292.75080 * 5 4 3 8 8 N 1.31365 * 119.99533 * 183.79814 * 7 5 4 9 9 Si 1.86799 * 120.00515 * 3.79546 * 7 5 4 10 10 H 1.48501 * 109.46913 * 94.58239 * 9 7 5 11 11 H 1.48498 * 109.47371 * 214.58567 * 9 7 5 12 12 H 1.48502 * 109.46884 * 334.58378 * 9 7 5 13 13 C 1.34779 * 120.00273 * 90.00101 * 4 3 2 14 14 O 1.21590 * 119.99494 * 9.88902 * 13 4 3 15 15 C 1.47737 * 120.00307 * 189.89175 * 13 4 3 16 16 C 1.39692 * 120.11449 * 341.49708 * 15 13 4 17 17 C 1.37959 * 119.98650 * 179.97438 * 16 15 13 18 18 C 1.38274 * 120.23224 * 0.04396 * 17 16 15 19 19 C 1.38969 * 120.23489 * 359.97438 * 18 17 16 20 20 N 1.39952 * 119.99646 * 180.02562 * 19 18 17 21 21 C 1.34775 * 120.00073 * 323.83009 * 20 19 18 22 22 C 1.50699 * 119.99889 * 181.15020 * 21 20 19 23 23 O 1.21284 * 120.00065 * 1.15472 * 21 20 19 24 24 C 1.38622 * 120.00486 * 359.97438 * 19 18 17 25 25 H 1.08992 * 109.47127 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47437 * 300.00625 * 1 2 3 27 27 H 1.09008 * 109.46984 * 59.99863 * 1 2 3 28 28 H 1.08999 * 109.46871 * 240.00131 * 2 1 3 29 29 H 1.09000 * 109.46563 * 119.99648 * 2 1 3 30 30 H 1.09002 * 109.46884 * 59.99847 * 3 2 1 31 31 H 1.08995 * 109.47008 * 300.00036 * 3 2 1 32 32 H 0.97006 * 119.99433 * 180.02562 * 8 7 5 33 33 H 1.08001 * 120.00839 * 0.02562 * 16 15 13 34 34 H 1.08007 * 119.88461 * 180.02562 * 17 16 15 35 35 H 1.08002 * 119.88452 * 179.97438 * 18 17 16 36 36 H 0.96998 * 119.99604 * 143.83145 * 20 19 18 37 37 H 1.09008 * 109.46881 * 60.00605 * 22 21 20 38 38 H 1.09000 * 109.46869 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47606 * 300.00339 * 22 21 20 40 40 H 1.07994 * 120.10882 * 179.73272 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1889 1.4427 1.1863 6 1 4.7719 0.5802 1.4735 7 6 4.1328 2.5533 2.0210 8 7 4.8479 2.5838 3.1225 9 14 3.0408 4.0021 1.5760 10 1 1.7271 3.8580 2.2532 11 1 3.6887 5.2638 2.0158 12 1 2.8385 4.0361 0.1052 13 6 4.1794 1.4424 -1.1663 14 8 3.5854 1.6231 -2.2117 15 6 5.6403 1.2226 -1.1752 16 6 6.3825 1.3978 -0.0048 17 6 7.7465 1.1914 -0.0160 18 6 8.3837 0.8119 -1.1830 19 6 7.6546 0.6352 -2.3528 20 7 8.3045 0.2505 -3.5310 21 6 9.5398 0.7163 -3.8021 22 6 10.2291 0.3227 -5.0831 23 8 10.0967 1.4522 -3.0151 24 6 6.2834 0.8390 -2.3524 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 4.8085 3.3585 3.7050 33 1 5.8886 1.6941 0.9088 34 1 8.3188 1.3269 0.8900 35 1 9.4519 0.6521 -1.1854 36 1 7.8658 -0.3513 -4.1525 37 1 9.6313 0.6515 -5.9333 38 1 11.2114 0.7933 -5.1265 39 1 10.3431 -0.7608 -5.1164 40 1 5.7158 0.7064 -3.2615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048953386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:22 Heat of formation + Delta-G solvation = -51.758776 kcal Electronic energy + Delta-G solvation = -23165.863864 eV Core-core repulsion = 19752.349042 eV Total energy + Delta-G solvation = -3413.514822 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63576 -40.86751 -38.91571 -37.23387 -35.84752 -34.85453 -33.50076 -31.93791 -31.68625 -29.44853 -27.56287 -26.95585 -24.36282 -23.39726 -22.61480 -21.91449 -20.89835 -19.60985 -18.56602 -18.03587 -17.30766 -17.20072 -16.77039 -16.25842 -16.03265 -15.81984 -15.56994 -15.14336 -14.97657 -14.71029 -14.46935 -14.42034 -13.95996 -13.62513 -13.37452 -13.26331 -13.24833 -13.01602 -12.76973 -12.70505 -12.44905 -12.29025 -12.05514 -11.94875 -11.50071 -11.33712 -11.02262 -10.96194 -10.50850 -9.89504 -9.34974 -9.08336 -8.47263 -6.38085 0.04589 0.40032 1.20973 1.31248 1.41722 1.58468 1.96573 2.16541 2.20248 2.66374 2.77756 3.04493 3.80987 3.90915 4.02383 4.09440 4.19008 4.31318 4.44672 4.48770 4.58667 4.62711 4.65437 4.68632 4.70691 4.72023 4.98183 4.99249 5.11348 5.13980 5.25439 5.29518 5.38900 5.46948 5.64436 5.72051 5.75440 6.05866 6.15069 6.25765 6.47342 6.92365 7.16328 7.27814 7.69868 8.57697 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.004858 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.358478 B = 5762.162407 C = 6643.682993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.099 3.901 4 N -0.478 5.478 5 C -0.335 4.335 6 H 0.085 0.915 7 C 0.045 3.955 8 N -0.888 5.888 9 Si 0.915 3.085 10 H -0.252 1.252 11 H -0.282 1.282 12 H -0.274 1.274 13 C 0.536 3.464 14 O -0.609 6.609 15 C -0.125 4.125 16 C -0.116 4.116 17 C -0.129 4.129 18 C -0.103 4.103 19 C 0.116 3.884 20 N -0.660 5.660 21 C 0.501 3.499 22 C -0.159 4.159 23 O -0.581 6.581 24 C -0.096 4.096 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.283 0.717 33 H 0.190 0.810 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.428 0.572 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 -6.728 -11.165 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.023 4.023 4 N -0.199 5.199 5 C -0.463 4.463 6 H 0.102 0.898 7 C -0.161 4.161 8 N -0.523 5.523 9 Si 0.740 3.260 10 H -0.177 1.177 11 H -0.208 1.208 12 H -0.199 1.199 13 C 0.327 3.673 14 O -0.495 6.495 15 C -0.129 4.129 16 C -0.134 4.134 17 C -0.147 4.147 18 C -0.123 4.123 19 C 0.022 3.978 20 N -0.307 5.307 21 C 0.292 3.708 22 C -0.218 4.218 23 O -0.460 6.460 24 C -0.117 4.117 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.206 0.794 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.267 0.733 37 H 0.133 0.867 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.677 -6.028 -10.976 13.051 hybrid contribution -0.638 0.619 0.116 0.897 sum 3.039 -5.409 -10.861 12.508 Atomic orbital electron populations 1.21674 0.93257 1.02788 1.02143 1.21718 0.97459 0.95659 1.01457 1.21793 0.81730 0.98170 1.00653 1.43514 1.04791 1.66735 1.04820 1.18521 1.29469 1.02179 0.96084 0.89803 1.25972 0.96116 0.99002 0.95041 1.69674 1.38322 1.31762 1.12551 0.86154 0.80627 0.80017 0.79230 1.17694 1.20846 1.19863 1.18908 0.87634 0.77083 0.83647 1.90573 1.71162 1.54557 1.33193 1.19745 0.93048 1.05086 0.94989 1.23824 0.94243 0.94021 1.01301 1.21345 0.94478 1.00538 0.98360 1.21404 1.00379 0.99291 0.91245 1.17470 0.90796 1.02302 0.87247 1.43517 1.17628 1.48759 1.20812 1.22039 0.80495 0.78511 0.89801 1.21942 1.01895 1.05762 0.92179 1.90727 1.65621 1.37974 1.51713 1.20964 0.93137 0.99882 0.97714 0.90834 0.92161 0.92414 0.93254 0.92022 0.91836 0.92133 0.90716 0.79395 0.84687 0.84873 0.73300 0.86718 0.88691 0.86228 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.12 16 2 C -0.12 -4.44 6.26 30.60 0.19 -4.24 16 3 C 0.10 4.19 4.08 86.38 0.35 4.54 16 4 N -0.48 -22.91 1.74 -656.71 -1.14 -24.05 16 5 C -0.33 -16.80 6.07 84.10 0.51 -16.29 16 6 H 0.08 4.52 7.01 -2.91 -0.02 4.50 16 7 C 0.05 2.29 4.89 84.96 0.42 2.71 16 8 N -0.89 -46.51 13.91 21.68 0.30 -46.20 16 9 Si 0.91 41.53 25.46 68.60 1.75 43.28 16 10 H -0.25 -10.63 7.11 99.48 0.71 -9.93 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -13.18 6.88 99.48 0.68 -12.49 16 13 C 0.54 26.22 7.52 86.75 0.65 26.87 16 14 O -0.61 -31.24 16.05 -4.00 -0.06 -31.31 16 15 C -0.13 -5.62 5.81 -20.11 -0.12 -5.74 16 16 C -0.12 -5.22 8.38 22.56 0.19 -5.03 16 17 C -0.13 -5.06 10.02 22.21 0.22 -4.84 16 18 C -0.10 -3.72 8.67 22.45 0.19 -3.53 16 19 C 0.12 3.88 6.25 38.11 0.24 4.12 16 20 N -0.66 -15.58 5.33 -303.60 -1.62 -17.20 16 21 C 0.50 11.88 7.74 87.66 0.68 12.56 16 22 C -0.16 -1.75 10.32 71.24 0.74 -1.02 16 23 O -0.58 -19.88 14.70 -3.04 -0.04 -19.93 16 24 C -0.10 -3.62 9.51 22.67 0.22 -3.40 16 25 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.06 2.65 5.46 -2.39 -0.01 2.64 16 31 H 0.06 2.62 7.31 -2.39 -0.02 2.61 16 32 H 0.28 13.94 8.31 -92.70 -0.77 13.17 16 33 H 0.19 9.42 3.36 -12.69 -0.04 9.38 16 34 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 35 H 0.13 4.65 6.41 -2.91 -0.02 4.63 16 36 H 0.43 6.54 8.82 -92.71 -0.82 5.73 16 37 H 0.11 0.76 8.14 -2.38 -0.02 0.75 16 38 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 39 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.14 4.77 7.76 -2.91 -0.02 4.75 16 Total: -1.00 -67.38 331.33 4.57 -62.81 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.20 Total: 29.00 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 5.19 Total: 3.59 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -2.46 Total: -87.45 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.11 Total: -51.23 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.75 Total: 43.28 kcal Total: -67.38 4.57 -62.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048953386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.054 kcal (2) G-P(sol) polarization free energy of solvation -67.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds