Wall clock time and date at job start Tue Mar 31 2020 06:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 H 1.08998 * 109.47156 * 303.51518 * 3 2 1 5 5 C 1.50702 * 109.47110 * 183.51024 * 3 2 1 6 6 H 1.07996 * 120.00259 * 245.76577 * 5 3 2 7 7 C 1.37881 * 119.99584 * 65.77072 * 5 3 2 8 8 N 1.31510 * 119.99790 * 199.38402 * 7 5 3 9 9 Si 1.86794 * 120.00212 * 19.38440 * 7 5 3 10 10 H 1.48503 * 109.47381 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47275 * 299.99976 * 9 7 5 12 12 H 1.48508 * 109.47255 * 60.00107 * 9 7 5 13 13 N 1.46500 * 109.47316 * 63.51295 * 3 2 1 14 14 C 1.34780 * 119.99889 * 275.00040 * 13 3 2 15 15 O 1.21584 * 119.99950 * 359.97438 * 14 13 3 16 16 N 1.34780 * 119.99736 * 179.97438 * 14 13 3 17 17 C 1.39984 * 119.99689 * 184.80381 * 16 14 13 18 18 C 1.39029 * 119.98116 * 141.73538 * 17 16 14 19 19 C 1.38265 * 120.27335 * 179.76713 * 18 17 16 20 20 C 1.37943 * 120.25257 * 0.50512 * 19 18 17 21 21 C 1.39849 * 119.96800 * 359.75000 * 20 19 18 22 22 C 1.47184 * 120.14187 * 180.02562 * 21 20 19 23 23 C 1.50702 * 119.99755 * 359.97438 * 22 21 20 24 24 O 1.21254 * 120.00199 * 179.97438 * 22 21 20 25 25 C 1.38517 * 119.98660 * 322.01041 * 17 16 14 26 26 H 1.09002 * 109.47018 * 59.99944 * 1 2 3 27 27 H 1.08997 * 109.46767 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46768 * 300.00420 * 1 2 3 29 29 H 1.08996 * 109.46941 * 240.00092 * 2 1 3 30 30 H 1.09002 * 109.47018 * 120.00056 * 2 1 3 31 31 H 0.97001 * 120.00265 * 354.95127 * 8 7 5 32 32 H 0.96996 * 120.00310 * 94.99374 * 13 3 2 33 33 H 0.96993 * 120.00176 * 4.80247 * 16 14 13 34 34 H 1.07997 * 119.86480 * 0.02562 * 18 17 16 35 35 H 1.07998 * 119.87378 * 180.23905 * 19 18 17 36 36 H 1.07994 * 120.01987 * 179.72482 * 20 19 18 37 37 H 1.09003 * 109.46994 * 60.00388 * 23 22 21 38 38 H 1.09004 * 109.46569 * 179.97438 * 23 22 21 39 39 H 1.08994 * 109.47261 * 300.00159 * 23 22 21 40 40 H 1.08003 * 120.12381 * 359.95865 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6262 1.9742 -0.8568 5 6 3.5446 1.4434 -0.0870 6 1 4.1331 1.8101 0.7409 7 6 4.1696 0.9760 -1.2237 8 7 5.4337 0.6163 -1.1783 9 14 3.2208 0.8539 -2.8281 10 1 4.1130 0.3270 -3.8919 11 1 2.0656 -0.0623 -2.6516 12 1 2.7298 2.2005 -3.2167 13 7 1.6221 2.1083 1.2362 14 6 0.4023 2.6761 1.3166 15 8 -0.3509 2.6361 0.3630 16 7 0.0176 3.2881 2.4541 17 6 -1.2839 3.7893 2.5735 18 6 -1.9609 3.6836 3.7832 19 6 -3.2449 4.1809 3.9092 20 6 -3.8682 4.7766 2.8324 21 6 -3.1989 4.8836 1.6092 22 6 -3.8601 5.5190 0.4580 23 6 -5.2617 6.0553 0.5958 24 8 -3.2772 5.6109 -0.6012 25 6 -1.8989 4.3852 1.4847 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.9466 0.7480 -0.3655 32 1 2.2230 2.1404 1.9969 33 1 0.6426 3.3813 3.1900 34 1 -1.4804 3.2149 4.6292 35 1 -3.7633 4.0988 4.8530 36 1 -4.8728 5.1597 2.9338 37 1 -5.2823 6.8239 1.3685 38 1 -5.5808 6.4861 -0.3533 39 1 -5.9356 5.2444 0.8720 40 1 -1.3758 4.4647 0.5432 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178316.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:31 Heat of formation + Delta-G solvation = -43.412833 kcal Electronic energy + Delta-G solvation = -22908.556047 eV Core-core repulsion = 19495.403132 eV Total energy + Delta-G solvation = -3413.152915 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55420 -39.49698 -38.10397 -35.66446 -34.35528 -32.51698 -31.79337 -31.35577 -30.24871 -28.82272 -27.04997 -23.90891 -23.08346 -22.27167 -20.96776 -19.91655 -19.66971 -18.52057 -17.60080 -17.01583 -16.28517 -15.74120 -15.47666 -15.11393 -15.02720 -14.80705 -14.20802 -13.80854 -13.66335 -13.37776 -12.98198 -12.63303 -12.54566 -12.50995 -12.34945 -12.19824 -12.01364 -11.73710 -11.57042 -10.88304 -10.70670 -10.43475 -10.27532 -9.86962 -9.81544 -9.68160 -9.50667 -9.11056 -9.01919 -8.32155 -8.28694 -7.98550 -6.60907 -4.23126 0.58930 1.30672 2.32647 2.99760 3.40443 3.47218 3.53161 3.61981 3.84297 3.96538 4.41569 4.68492 4.76089 4.83982 4.95084 5.02666 5.14253 5.17729 5.18981 5.40805 5.46980 5.74177 5.81908 6.09328 6.11481 6.17508 6.23436 6.29233 6.31889 6.48283 6.65699 6.80175 6.93938 6.99440 7.04411 7.14968 7.40014 7.47249 7.48052 7.75183 8.22392 8.57470 8.72042 9.08050 9.45282 10.80102 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022079 B = 0.004074 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.886539 B = 6870.686985 C = 7544.990156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.264 3.736 4 H 0.042 0.958 5 C -0.621 4.621 6 H 0.061 0.939 7 C 0.042 3.958 8 N -0.895 5.895 9 Si 1.038 2.962 10 H -0.283 1.283 11 H -0.270 1.270 12 H -0.279 1.279 13 N -0.711 5.711 14 C 0.692 3.308 15 O -0.575 6.575 16 N -0.698 5.698 17 C 0.167 3.833 18 C -0.122 4.122 19 C -0.116 4.116 20 C -0.099 4.099 21 C -0.157 4.157 22 C 0.390 3.610 23 C -0.197 4.197 24 O -0.449 6.449 25 C -0.059 4.059 26 H 0.052 0.948 27 H 0.029 0.971 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.269 0.731 32 H 0.390 0.610 33 H 0.404 0.596 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.519 7.908 12.324 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.161 3.839 4 H 0.060 0.940 5 C -0.658 4.658 6 H 0.079 0.921 7 C -0.165 4.165 8 N -0.527 5.527 9 Si 0.866 3.134 10 H -0.209 1.209 11 H -0.196 1.196 12 H -0.205 1.205 13 N -0.362 5.362 14 C 0.392 3.608 15 O -0.452 6.452 16 N -0.347 5.347 17 C 0.071 3.929 18 C -0.143 4.143 19 C -0.135 4.135 20 C -0.118 4.118 21 C -0.159 4.159 22 C 0.267 3.733 23 C -0.254 4.254 24 O -0.324 6.324 25 C -0.080 4.080 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.223 0.777 33 H 0.239 0.761 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.637 7.330 9.225 22.049 hybrid contribution 0.565 0.463 2.649 2.748 sum -18.072 7.793 11.874 22.985 Atomic orbital electron populations 1.21860 0.97329 0.98715 1.01967 1.22323 0.93800 0.99773 1.01673 1.18980 0.95139 0.88068 0.81738 0.93986 1.22052 0.89502 1.49562 1.04721 0.92062 1.25660 0.97019 0.91976 1.01867 1.70889 1.09819 1.39596 1.32445 0.84113 0.75655 0.77820 0.75835 1.20854 1.19605 1.20519 1.45551 1.13640 1.58053 1.18913 1.16144 0.83478 0.78703 0.82459 1.90925 1.53420 1.64788 1.36095 1.42818 1.12029 1.61290 1.18563 1.17442 0.85309 0.95765 0.94409 1.21180 0.94953 1.00979 0.97224 1.20836 0.94499 0.99235 0.98885 1.21304 0.99664 0.98959 0.91869 1.20408 0.95814 1.04088 0.95598 1.22518 0.88882 0.75315 0.86540 1.22230 0.95287 1.02991 1.04904 1.90590 1.66186 1.46514 1.29062 1.21675 0.94153 0.92344 0.99826 0.92845 0.95216 0.93553 0.91441 0.93135 0.92085 0.77731 0.76066 0.85440 0.85279 0.85277 0.88946 0.89813 0.88906 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.49 37.16 0.32 -2.63 16 2 C -0.14 -3.09 5.32 -26.73 -0.14 -3.23 16 3 C 0.26 6.32 1.84 -69.08 -0.13 6.19 16 4 H 0.04 1.11 6.19 -51.93 -0.32 0.79 16 5 C -0.62 -16.69 8.98 -34.44 -0.31 -16.99 16 6 H 0.06 1.71 7.96 -52.49 -0.42 1.29 16 7 C 0.04 1.18 5.29 -17.82 -0.09 1.08 16 8 N -0.89 -26.56 13.69 55.43 0.76 -25.80 16 9 Si 1.04 25.39 26.36 -169.99 -4.48 20.90 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.22 5.82 56.52 0.33 -5.89 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.71 -14.16 5.01 -59.81 -0.30 -14.46 16 14 C 0.69 13.26 6.89 -86.91 -0.60 12.66 16 15 O -0.57 -12.97 11.09 5.29 0.06 -12.91 16 16 N -0.70 -10.12 5.34 -14.26 -0.08 -10.20 16 17 C 0.17 2.34 6.24 -83.74 -0.52 1.82 16 18 C -0.12 -1.28 9.96 -39.28 -0.39 -1.68 16 19 C -0.12 -1.02 10.02 -39.68 -0.40 -1.42 16 20 C -0.10 -0.92 9.47 -39.09 -0.37 -1.29 16 21 C -0.16 -2.03 5.87 -105.09 -0.62 -2.64 16 22 C 0.39 5.01 7.23 -30.68 -0.22 4.78 16 23 C -0.20 -1.49 8.93 36.01 0.32 -1.16 16 24 O -0.45 -7.82 17.08 5.58 0.10 -7.73 16 25 C -0.06 -0.95 8.23 -38.90 -0.32 -1.27 16 26 H 0.05 1.18 7.75 -51.93 -0.40 0.78 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.96 5.68 -51.93 -0.30 0.67 16 29 H 0.07 1.59 5.05 -51.93 -0.26 1.33 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.27 7.88 8.73 -40.82 -0.36 7.52 16 32 H 0.39 6.79 8.54 -40.82 -0.35 6.44 16 33 H 0.40 4.44 8.84 -40.82 -0.36 4.08 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 0.75 7.04 -52.49 -0.37 0.39 16 37 H 0.09 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.08 0.64 8.12 -51.93 -0.42 0.21 16 39 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 40 H 0.15 2.98 6.03 -52.48 -0.32 2.66 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -33.92 329.86 -7.72 -41.64 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.27 Total: 9.36 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -3.48 Total: -5.78 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.38 Total: -50.46 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.15 Total: -20.64 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -4.48 Total: 20.90 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.92 -7.72 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178316.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.768 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds