Wall clock time and date at job start Tue Mar 31 2020 06:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 H 1.09000 * 109.46634 * 54.99613 * 3 2 1 5 5 C 1.50696 * 109.46898 * 174.99937 * 3 2 1 6 6 H 1.07998 * 119.99863 * 120.00047 * 5 3 2 7 7 C 1.37876 * 119.99725 * 299.99361 * 5 3 2 8 8 N 1.31510 * 120.00550 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99766 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47340 * 89.99941 * 9 7 5 11 11 H 1.48503 * 109.47166 * 210.00557 * 9 7 5 12 12 H 1.48505 * 109.46972 * 330.00029 * 9 7 5 13 13 N 1.46499 * 109.46720 * 294.99958 * 3 2 1 14 14 C 1.34774 * 120.00125 * 85.27682 * 13 3 2 15 15 O 1.21574 * 120.00168 * 359.72222 * 14 13 3 16 16 N 1.34777 * 119.99946 * 179.71784 * 14 13 3 17 17 C 1.39304 * 120.00105 * 175.42758 * 16 14 13 18 18 C 1.39220 * 119.89926 * 214.90073 * 17 16 14 19 19 C 1.36600 * 120.09866 * 179.72405 * 18 17 16 20 20 C 1.40065 * 119.89720 * 0.54338 * 19 18 17 21 21 C 1.46832 * 120.09817 * 179.70454 * 20 19 18 22 22 C 1.50696 * 120.00257 * 0.02562 * 21 20 19 23 23 O 1.21303 * 119.99720 * 180.02562 * 21 20 19 24 24 C 1.40059 * 119.80191 * 359.72957 * 20 19 18 25 25 C 1.36606 * 119.89426 * 359.97438 * 24 20 19 26 26 H 1.08999 * 109.47312 * 299.99930 * 1 2 3 27 27 H 1.09004 * 109.46877 * 60.00609 * 1 2 3 28 28 H 1.09005 * 109.46654 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47119 * 239.99842 * 2 1 3 30 30 H 1.09004 * 109.46660 * 119.99898 * 2 1 3 31 31 H 0.97004 * 120.00510 * 179.97438 * 8 7 5 32 32 H 0.96999 * 119.99794 * 264.99510 * 13 3 2 33 33 H 0.97004 * 120.00395 * 355.43600 * 16 14 13 34 34 H 1.08000 * 119.95286 * 359.97438 * 18 17 16 35 35 H 1.08010 * 120.05266 * 180.27346 * 19 18 17 36 36 H 1.09003 * 109.47324 * 60.00252 * 22 21 20 37 37 H 1.09004 * 109.47198 * 179.97438 * 22 21 20 38 38 H 1.09002 * 109.47335 * 300.00467 * 22 21 20 39 39 H 1.08002 * 120.05407 * 179.97438 * 24 20 19 40 40 H 1.07997 * 119.94566 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8785 1.2281 8 7 3.4062 0.3368 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1142 2.0849 11 1 6.4395 -0.3098 2.1551 12 1 6.6135 0.8415 0.0279 13 7 1.6525 2.0974 -1.2518 14 6 0.4373 2.6691 -1.3651 15 8 -0.3392 2.6370 -0.4302 16 7 0.0829 3.2766 -2.5149 17 6 -1.2057 3.7837 -2.6663 18 6 -1.8281 3.7370 -3.9107 19 6 -3.0938 4.2279 -4.0625 20 6 -3.7610 4.7893 -2.9663 21 6 -5.1191 5.3242 -3.1260 22 6 -5.7973 5.2693 -4.4706 23 8 -5.6950 5.8104 -2.1756 24 6 -3.1287 4.8393 -1.7176 25 6 -1.8652 4.3403 -1.5738 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8292 -0.0616 2.9497 32 1 2.2720 2.1231 -1.9978 33 1 0.7250 3.3606 -3.2371 34 1 -1.3111 3.3083 -4.7565 35 1 -3.5776 4.1873 -5.0273 36 1 -5.8838 4.2312 -4.7918 37 1 -6.7915 5.7096 -4.3943 38 1 -5.2075 5.8267 -5.1982 39 1 -3.6392 5.2716 -0.8697 40 1 -1.3767 4.3788 -0.6114 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:33 Heat of formation + Delta-G solvation = -44.328110 kcal Electronic energy + Delta-G solvation = -22507.931689 eV Core-core repulsion = 19094.739085 eV Total energy + Delta-G solvation = -3413.192604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.55625 -39.55238 -38.04807 -35.51754 -34.31906 -32.54853 -31.64452 -31.08158 -30.47843 -28.67285 -26.90598 -23.93987 -22.92006 -22.65407 -20.93760 -19.89032 -19.60534 -18.30451 -17.72035 -16.67558 -16.07751 -15.66695 -15.13952 -15.10600 -14.99465 -14.35290 -14.27682 -14.00750 -13.63982 -13.30463 -12.98027 -12.85775 -12.68454 -12.40567 -12.31371 -12.09410 -11.61981 -11.30928 -11.20938 -11.01197 -10.90333 -10.37783 -10.26532 -10.16478 -9.89407 -9.64705 -9.45248 -9.11948 -9.02744 -8.56451 -8.16580 -7.82609 -6.18011 -4.27901 0.62335 1.43544 2.34336 3.04035 3.20860 3.28209 3.29605 3.59964 3.93821 4.01531 4.27087 4.67996 4.80122 4.90219 4.92765 5.13792 5.16236 5.19168 5.30340 5.47678 5.58837 5.75159 5.96878 6.13098 6.32443 6.36307 6.42099 6.43895 6.58157 6.63191 6.93041 7.01968 7.08650 7.26904 7.30340 7.37155 7.46198 7.58422 7.78948 7.89128 8.12329 8.63878 8.75217 9.12602 9.40031 10.87291 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037556 B = 0.003028 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.370378 B = 9245.374874 C = 9398.328241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.715 5.715 14 C 0.690 3.310 15 O -0.571 6.571 16 N -0.695 5.695 17 C 0.220 3.780 18 C -0.174 4.174 19 C -0.050 4.050 20 C -0.211 4.211 21 C 0.397 3.603 22 C -0.199 4.199 23 O -0.468 6.468 24 C -0.037 4.037 25 C -0.139 4.139 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.022 0.978 29 H 0.031 0.969 30 H 0.100 0.900 31 H 0.265 0.735 32 H 0.386 0.614 33 H 0.405 0.595 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.931 6.460 -15.323 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.366 5.366 14 C 0.391 3.609 15 O -0.448 6.448 16 N -0.342 5.342 17 C 0.122 3.878 18 C -0.195 4.195 19 C -0.069 4.069 20 C -0.213 4.213 21 C 0.277 3.723 22 C -0.256 4.256 23 O -0.345 6.345 24 C -0.056 4.056 25 C -0.159 4.159 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.240 0.760 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.150 0.850 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.797 6.479 -13.690 18.601 hybrid contribution 1.754 -0.174 -0.738 1.911 sum -9.044 6.304 -14.429 18.158 Atomic orbital electron populations 1.21817 0.98245 0.98006 1.01236 1.21960 0.92688 0.99790 1.02302 1.18758 0.94095 0.88949 0.79779 0.93127 1.21201 0.90561 1.39303 1.06399 0.92079 1.24875 0.98667 0.94723 0.95346 1.69888 1.35207 1.37376 1.09321 0.86441 0.84712 0.77701 0.78194 1.20542 1.21027 1.19874 1.45873 1.13234 1.58070 1.19439 1.16135 0.83826 0.78813 0.82124 1.90905 1.51611 1.64539 1.37716 1.42885 1.12170 1.60480 1.18672 1.17887 0.84655 0.91139 0.94130 1.20603 0.96085 1.05920 0.96928 1.20862 0.93625 0.94616 0.97757 1.20370 0.97163 1.08518 0.95281 1.22370 0.85990 0.74114 0.89873 1.22241 1.02261 1.04498 0.96647 1.90540 1.65506 1.35787 1.42648 1.21078 0.93757 0.94380 0.96371 1.21223 0.95869 0.98500 1.00326 0.93096 0.94400 0.95910 0.95050 0.88191 0.92456 0.78135 0.76014 0.85315 0.85131 0.88956 0.90009 0.88992 0.84973 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.52 37.16 0.32 -2.68 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.29 6.89 2.24 -69.08 -0.15 6.74 16 4 H 0.05 1.42 7.57 -51.93 -0.39 1.03 16 5 C -0.54 -13.62 8.73 -34.44 -0.30 -13.92 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.11 11.29 55.43 0.63 -23.48 16 9 Si 0.90 20.09 29.54 -169.99 -5.02 15.06 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 N -0.72 -13.84 5.02 -59.82 -0.30 -14.14 16 14 C 0.69 12.89 6.98 -86.92 -0.61 12.29 16 15 O -0.57 -12.63 10.90 5.30 0.06 -12.58 16 16 N -0.70 -9.68 5.31 -14.21 -0.08 -9.75 16 17 C 0.22 3.03 6.30 -83.73 -0.53 2.50 16 18 C -0.17 -1.84 9.90 -39.81 -0.39 -2.23 16 19 C -0.05 -0.48 9.42 -39.49 -0.37 -0.85 16 20 C -0.21 -2.51 5.87 -105.05 -0.62 -3.12 16 21 C 0.40 4.49 7.21 -30.84 -0.22 4.27 16 22 C -0.20 -1.35 8.92 36.00 0.32 -1.03 16 23 O -0.47 -7.00 17.07 5.54 0.09 -6.90 16 24 C -0.04 -0.51 9.55 -39.49 -0.38 -0.89 16 25 C -0.14 -2.12 8.62 -39.81 -0.34 -2.47 16 26 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 27 H 0.04 0.82 5.66 -51.93 -0.29 0.52 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.39 6.34 8.56 -40.82 -0.35 5.99 16 33 H 0.40 4.16 8.83 -40.82 -0.36 3.80 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.13 0.78 7.03 -52.48 -0.37 0.42 16 36 H 0.09 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 38 H 0.09 0.44 8.08 -51.93 -0.42 0.02 16 39 H 0.13 1.83 7.64 -52.49 -0.40 1.43 16 40 H 0.15 2.66 6.20 -52.49 -0.33 2.33 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -31.23 333.41 -8.39 -39.62 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.28 Total: 10.06 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.52 Total: -2.91 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.25 Total: -47.37 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.15 Total: -19.48 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.23 -8.39 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.711 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds