Wall clock time and date at job start Tue Mar 31 2020 06:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 H 1.09000 * 109.46634 * 54.99613 * 3 2 1 5 5 C 1.50696 * 109.46898 * 174.99937 * 3 2 1 6 6 H 1.07998 * 119.99863 * 120.00047 * 5 3 2 7 7 C 1.37876 * 119.99725 * 299.99361 * 5 3 2 8 8 N 1.31510 * 120.00550 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99766 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47340 * 89.99941 * 9 7 5 11 11 H 1.48503 * 109.47166 * 210.00557 * 9 7 5 12 12 H 1.48505 * 109.46972 * 330.00029 * 9 7 5 13 13 N 1.46499 * 109.46720 * 294.99958 * 3 2 1 14 14 C 1.34774 * 120.00125 * 85.27682 * 13 3 2 15 15 O 1.21574 * 120.00168 * 359.72222 * 14 13 3 16 16 N 1.34777 * 119.99946 * 179.71784 * 14 13 3 17 17 C 1.39304 * 120.00105 * 175.42758 * 16 14 13 18 18 C 1.39220 * 119.89926 * 214.90073 * 17 16 14 19 19 C 1.36600 * 120.09866 * 179.72405 * 18 17 16 20 20 C 1.40065 * 119.89720 * 0.54338 * 19 18 17 21 21 C 1.46832 * 120.09817 * 179.70454 * 20 19 18 22 22 C 1.50696 * 120.00257 * 0.02562 * 21 20 19 23 23 O 1.21303 * 119.99720 * 180.02562 * 21 20 19 24 24 C 1.40059 * 119.80191 * 359.72957 * 20 19 18 25 25 C 1.36606 * 119.89426 * 359.97438 * 24 20 19 26 26 H 1.08999 * 109.47312 * 299.99930 * 1 2 3 27 27 H 1.09004 * 109.46877 * 60.00609 * 1 2 3 28 28 H 1.09005 * 109.46654 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47119 * 239.99842 * 2 1 3 30 30 H 1.09004 * 109.46660 * 119.99898 * 2 1 3 31 31 H 0.97004 * 120.00510 * 179.97438 * 8 7 5 32 32 H 0.96999 * 119.99794 * 264.99510 * 13 3 2 33 33 H 0.97004 * 120.00395 * 355.43600 * 16 14 13 34 34 H 1.08000 * 119.95286 * 359.97438 * 18 17 16 35 35 H 1.08010 * 120.05266 * 180.27346 * 19 18 17 36 36 H 1.09003 * 109.47324 * 60.00252 * 22 21 20 37 37 H 1.09004 * 109.47198 * 179.97438 * 22 21 20 38 38 H 1.09002 * 109.47335 * 300.00467 * 22 21 20 39 39 H 1.08002 * 120.05407 * 179.97438 * 24 20 19 40 40 H 1.07997 * 119.94566 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8785 1.2281 8 7 3.4062 0.3368 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1142 2.0849 11 1 6.4395 -0.3098 2.1551 12 1 6.6135 0.8415 0.0279 13 7 1.6525 2.0974 -1.2518 14 6 0.4373 2.6691 -1.3651 15 8 -0.3392 2.6370 -0.4302 16 7 0.0829 3.2766 -2.5149 17 6 -1.2057 3.7837 -2.6663 18 6 -1.8281 3.7370 -3.9107 19 6 -3.0938 4.2279 -4.0625 20 6 -3.7610 4.7893 -2.9663 21 6 -5.1191 5.3242 -3.1260 22 6 -5.7973 5.2693 -4.4706 23 8 -5.6950 5.8104 -2.1756 24 6 -3.1287 4.8393 -1.7176 25 6 -1.8652 4.3403 -1.5738 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8292 -0.0616 2.9497 32 1 2.2720 2.1231 -1.9978 33 1 0.7250 3.3606 -3.2371 34 1 -1.3111 3.3083 -4.7565 35 1 -3.5776 4.1873 -5.0273 36 1 -5.8838 4.2312 -4.7918 37 1 -6.7915 5.7096 -4.3943 38 1 -5.2075 5.8267 -5.1982 39 1 -3.6392 5.2716 -0.8697 40 1 -1.3767 4.3788 -0.6114 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:33 Heat of formation + Delta-G solvation = -65.272285 kcal Electronic energy + Delta-G solvation = -22508.839897 eV Core-core repulsion = 19094.739085 eV Total energy + Delta-G solvation = -3414.100812 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.79075 -40.67396 -39.19979 -37.15968 -35.70816 -34.34736 -32.92614 -32.42520 -31.52177 -29.69131 -28.67023 -25.35210 -24.48285 -23.65933 -22.39530 -21.37788 -20.85390 -19.79681 -18.91164 -17.94201 -17.60535 -16.94414 -16.78418 -16.28868 -16.01002 -15.91858 -15.39670 -15.10895 -14.92975 -14.57913 -14.48870 -14.22406 -13.74894 -13.61067 -13.47435 -13.18232 -13.01246 -12.93192 -12.86122 -12.69775 -12.24869 -12.12326 -12.06104 -11.63789 -11.37208 -11.09099 -11.01508 -10.68564 -10.54342 -10.02889 -9.74553 -9.07277 -8.16311 -6.33566 -0.35329 0.48272 1.39436 1.45636 1.45997 1.56206 1.76242 2.21752 2.42264 2.89239 3.13657 3.21666 3.43659 3.84889 3.98336 4.24974 4.37125 4.42435 4.49174 4.56890 4.58044 4.72131 4.75162 4.76582 4.98090 5.05890 5.15604 5.20887 5.28483 5.33060 5.42697 5.44164 5.50828 5.57262 5.61531 5.75276 5.86079 5.99689 6.16452 6.25425 6.61801 6.74701 7.22556 7.34972 7.68508 8.89105 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037556 B = 0.003028 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.370378 B = 9245.374874 C = 9398.328241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.296 3.704 4 H -0.002 1.002 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.259 1.259 13 N -0.712 5.712 14 C 0.690 3.310 15 O -0.611 6.611 16 N -0.675 5.675 17 C 0.198 3.802 18 C -0.157 4.157 19 C -0.029 4.029 20 C -0.216 4.216 21 C 0.395 3.605 22 C -0.191 4.191 23 O -0.517 6.517 24 C -0.058 4.058 25 C -0.163 4.163 26 H 0.023 0.977 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.265 0.735 32 H 0.404 0.596 33 H 0.425 0.575 34 H 0.170 0.830 35 H 0.184 0.816 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 6.250 -19.889 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.192 3.808 4 H 0.016 0.984 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.183 1.183 13 N -0.364 5.364 14 C 0.391 3.609 15 O -0.490 6.490 16 N -0.324 5.324 17 C 0.100 3.900 18 C -0.177 4.177 19 C -0.047 4.047 20 C -0.218 4.218 21 C 0.278 3.722 22 C -0.248 4.248 23 O -0.397 6.397 24 C -0.077 4.077 25 C -0.184 4.184 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.239 0.761 33 H 0.264 0.736 34 H 0.187 0.813 35 H 0.202 0.798 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.645 6.297 -18.347 22.126 hybrid contribution 1.598 -0.037 0.648 1.724 sum -9.047 6.260 -17.699 20.840 Atomic orbital electron populations 1.21640 0.97157 0.98886 1.00075 1.21799 0.93524 0.99254 1.01389 1.18278 0.93489 0.88836 0.80166 0.98385 1.21563 0.91267 1.38917 1.06739 0.90790 1.25756 1.03242 0.94405 0.95056 1.70048 1.37090 1.38322 1.09886 0.85378 0.79174 0.77307 0.78659 1.20634 1.21101 1.18256 1.45436 1.14091 1.58299 1.18570 1.16232 0.83068 0.78737 0.82911 1.90903 1.52687 1.65802 1.39653 1.42470 1.12968 1.59378 1.17539 1.18115 0.84570 0.92121 0.95153 1.21024 0.96211 1.04300 0.96169 1.21401 0.92858 0.91707 0.98778 1.20685 0.97815 1.08295 0.94970 1.23107 0.85478 0.72309 0.91328 1.22282 1.02084 1.06678 0.93728 1.90537 1.66421 1.38018 1.44766 1.21023 0.93637 0.95419 0.97586 1.20967 0.96768 1.00882 0.99756 0.95825 0.93962 0.93812 0.93807 0.91004 0.92604 0.76126 0.73583 0.81274 0.79845 0.86264 0.90061 0.85895 0.86743 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.52 71.98 0.61 -4.81 16 2 C -0.12 -5.82 5.45 30.60 0.17 -5.66 16 3 C 0.30 14.73 2.24 44.24 0.10 14.83 16 4 H 0.00 -0.11 7.57 -2.39 -0.02 -0.12 16 5 C -0.55 -27.97 8.73 25.60 0.22 -27.75 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -51.72 11.29 21.45 0.24 -51.48 16 9 Si 0.97 41.19 29.54 68.60 2.03 43.22 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 13 N -0.71 -27.65 5.02 -461.43 -2.32 -29.97 16 14 C 0.69 26.23 6.98 179.06 1.25 27.47 16 15 O -0.61 -28.67 10.90 -3.95 -0.04 -28.71 16 16 N -0.67 -18.03 5.31 -317.15 -1.69 -19.71 16 17 C 0.20 5.22 6.30 38.43 0.24 5.46 16 18 C -0.16 -2.63 9.90 22.12 0.22 -2.41 16 19 C -0.03 -0.42 9.42 22.33 0.21 -0.21 16 20 C -0.22 -4.75 5.87 -20.14 -0.12 -4.87 16 21 C 0.40 8.26 7.21 27.93 0.20 8.46 16 22 C -0.19 -1.74 8.92 71.23 0.64 -1.11 16 23 O -0.52 -15.74 17.07 -3.10 -0.05 -15.79 16 24 C -0.06 -1.70 9.55 22.33 0.21 -1.48 16 25 C -0.16 -5.29 8.62 22.12 0.19 -5.10 16 26 H 0.02 1.15 7.85 -2.39 -0.02 1.13 16 27 H 0.04 1.84 5.66 -2.38 -0.01 1.83 16 28 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 3.91 5.95 -2.38 -0.01 3.90 16 31 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.40 12.72 8.56 -92.71 -0.79 11.93 16 33 H 0.43 7.63 8.83 -92.71 -0.82 6.81 16 34 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.18 0.76 7.03 -2.91 -0.02 0.74 16 36 H 0.12 0.53 8.08 -2.39 -0.02 0.51 16 37 H 0.08 0.82 8.12 -2.38 -0.02 0.80 16 38 H 0.12 0.43 8.08 -2.39 -0.02 0.41 16 39 H 0.11 3.61 7.64 -2.91 -0.02 3.59 16 40 H 0.11 4.44 6.20 -2.91 -0.02 4.42 16 Total: -1.00 -74.60 333.41 2.23 -72.37 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.53 Total: 25.99 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 4.59 Total: 4.10 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -3.76 Total: -101.17 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -0.10 Total: -44.51 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -74.60 2.23 -72.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.097 kcal (2) G-P(sol) polarization free energy of solvation -74.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds