Wall clock time and date at job start Tue Mar 31 2020 06:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47337 * 2 1 4 4 H 1.09000 * 109.47056 * 305.00523 * 3 2 1 5 5 C 1.50697 * 109.47073 * 185.00261 * 3 2 1 6 6 H 1.08003 * 119.99869 * 240.00011 * 5 3 2 7 7 C 1.37880 * 120.00302 * 60.00401 * 5 3 2 8 8 N 1.31511 * 119.99730 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99964 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47573 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47351 * 120.00084 * 9 7 5 12 12 H 1.48506 * 109.47136 * 239.99602 * 9 7 5 13 13 N 1.46502 * 109.46832 * 64.99971 * 3 2 1 14 14 C 1.34772 * 120.00351 * 275.00153 * 13 3 2 15 15 O 1.21587 * 119.99852 * 0.02562 * 14 13 3 16 16 N 1.34772 * 120.00243 * 180.02562 * 14 13 3 17 17 C 1.39297 * 120.00286 * 174.67817 * 16 14 13 18 18 C 1.39217 * 119.90285 * 146.14171 * 17 16 14 19 19 C 1.36607 * 120.10611 * 179.71860 * 18 17 16 20 20 C 1.40064 * 119.89147 * 0.55859 * 19 18 17 21 21 C 1.46834 * 120.09815 * 179.70119 * 20 19 18 22 22 C 1.50699 * 120.00006 * 0.02562 * 21 20 19 23 23 O 1.21300 * 119.99848 * 180.02562 * 21 20 19 24 24 C 1.40072 * 119.80176 * 359.71365 * 20 19 18 25 25 C 1.36594 * 119.89249 * 0.02562 * 24 20 19 26 26 H 1.09002 * 109.47391 * 59.99611 * 1 2 3 27 27 H 1.08995 * 109.47378 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47077 * 299.99485 * 1 2 3 29 29 H 1.09001 * 109.47077 * 240.00515 * 2 1 3 30 30 H 1.09002 * 109.47391 * 120.00389 * 2 1 3 31 31 H 0.97001 * 120.00146 * 180.02562 * 8 7 5 32 32 H 0.97002 * 119.99761 * 95.00243 * 13 3 2 33 33 H 0.96999 * 120.00266 * 354.67971 * 16 14 13 34 34 H 1.08003 * 119.94792 * 0.02562 * 18 17 16 35 35 H 1.07995 * 120.05059 * 180.27250 * 19 18 17 36 36 H 1.09003 * 109.46906 * 90.00122 * 22 21 20 37 37 H 1.09001 * 109.47041 * 210.00764 * 22 21 20 38 38 H 1.09003 * 109.46920 * 330.00271 * 22 21 20 39 39 H 1.07995 * 120.05024 * 179.97438 * 24 20 19 40 40 H 1.08007 * 119.94775 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0048 0.8813 -1.3819 10 1 6.5987 1.5472 -0.1949 11 1 6.4970 -0.5175 -1.4632 12 1 6.3989 1.6168 -2.6104 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6644 1.3671 15 8 -0.3415 2.6318 0.4322 16 7 0.0788 3.2673 2.5185 17 6 -1.1332 3.9488 2.6018 18 6 -1.8433 3.9581 3.7992 19 6 -3.0295 4.6300 3.8872 20 6 -3.5367 5.3004 2.7670 21 6 -4.8145 6.0184 2.8546 22 6 -5.5819 6.0353 4.1515 23 8 -5.2524 6.5980 1.8832 24 6 -2.8216 5.2835 1.5627 25 6 -1.6337 4.6136 1.4856 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0617 -2.9496 32 1 2.2720 2.1231 1.9978 33 1 0.6663 3.2267 3.2893 34 1 -1.4533 3.4375 4.6614 35 1 -3.5774 4.6403 4.8178 36 1 -5.2683 6.8920 4.7481 37 1 -6.6489 6.1098 3.9414 38 1 -5.3835 5.1163 4.7030 39 1 -3.2092 5.7987 0.6963 40 1 -1.0818 4.5996 0.5574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:35 Heat of formation + Delta-G solvation = -43.724250 kcal Electronic energy + Delta-G solvation = -22495.025591 eV Core-core repulsion = 19081.859172 eV Total energy + Delta-G solvation = -3413.166419 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.56121 -39.55525 -38.05184 -35.52118 -34.32146 -32.54614 -31.67588 -31.09061 -30.46974 -28.66911 -26.91041 -23.95445 -22.92489 -22.67479 -20.94208 -19.86647 -19.60442 -18.30853 -17.75916 -16.66140 -16.07120 -15.71501 -15.17972 -15.11407 -14.96873 -14.38550 -14.19981 -14.01454 -13.65446 -13.33827 -13.01354 -12.80603 -12.66010 -12.40760 -12.33687 -12.08521 -11.62430 -11.31563 -11.19734 -11.00282 -10.90815 -10.37070 -10.25416 -10.19004 -9.88132 -9.66046 -9.49461 -9.11290 -9.04098 -8.57157 -8.14468 -7.82798 -6.18319 -4.28008 0.62165 1.43078 2.33842 3.03752 3.19873 3.28478 3.30686 3.58568 3.95954 4.01394 4.27075 4.66555 4.78205 4.87840 4.90385 5.13652 5.16095 5.23812 5.30380 5.46821 5.57128 5.73394 5.96215 6.12617 6.30043 6.35914 6.41552 6.43087 6.57065 6.62579 6.92693 7.00786 7.07843 7.26465 7.29814 7.36853 7.46469 7.58559 7.78662 7.88778 8.12076 8.63686 8.75204 9.12262 9.39919 10.87084 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035326 B = 0.003024 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.420197 B = 9257.384860 C = 9312.605087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.285 3.715 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.715 5.715 14 C 0.690 3.310 15 O -0.570 6.570 16 N -0.695 5.695 17 C 0.224 3.776 18 C -0.175 4.175 19 C -0.049 4.049 20 C -0.212 4.212 21 C 0.398 3.602 22 C -0.200 4.200 23 O -0.469 6.469 24 C -0.035 4.035 25 C -0.139 4.139 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.037 0.963 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.387 0.613 33 H 0.405 0.595 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.972 7.029 15.131 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.366 5.366 14 C 0.390 3.610 15 O -0.447 6.447 16 N -0.342 5.342 17 C 0.125 3.875 18 C -0.197 4.197 19 C -0.068 4.068 20 C -0.214 4.214 21 C 0.277 3.723 22 C -0.257 4.257 23 O -0.346 6.346 24 C -0.054 4.054 25 C -0.160 4.160 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.118 0.882 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.240 0.760 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.151 0.849 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.758 7.115 13.480 18.656 hybrid contribution 1.697 -0.266 0.748 1.873 sum -9.061 6.848 14.228 18.205 Atomic orbital electron populations 1.21819 0.98241 0.98007 1.01257 1.21965 0.92691 0.99809 1.02317 1.18767 0.94137 0.88939 0.79778 0.93121 1.21235 0.90539 1.39202 1.06388 0.92020 1.24879 0.98688 0.94747 0.95341 1.69899 1.35109 1.37438 1.09339 0.86385 0.84706 0.77801 0.78144 1.19768 1.20842 1.20845 1.45882 1.12823 1.58513 1.19391 1.16144 0.83756 0.78864 0.82206 1.90933 1.51577 1.64131 1.38025 1.42926 1.20148 1.55674 1.15425 1.17873 0.85547 0.89624 0.94430 1.20591 0.96344 1.04864 0.97857 1.20904 0.94569 0.93962 0.97358 1.20365 0.98801 1.06632 0.95622 1.22356 0.84658 0.76042 0.89223 1.22231 1.01779 1.04435 0.97263 1.90539 1.68023 1.36839 1.39180 1.21044 0.92873 0.94740 0.96727 1.21064 0.97793 0.97399 0.99698 0.93086 0.95905 0.94396 0.88181 0.95050 0.92516 0.78129 0.76016 0.85298 0.85022 0.88669 0.89684 0.89595 0.84949 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.15 0.32 -2.68 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.29 6.88 2.24 -69.08 -0.15 6.73 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.60 8.73 -34.44 -0.30 -13.90 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.10 11.29 55.43 0.63 -23.47 16 9 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.72 -13.84 5.03 -59.81 -0.30 -14.14 16 14 C 0.69 12.90 6.86 -86.93 -0.60 12.30 16 15 O -0.57 -12.68 11.15 5.29 0.06 -12.62 16 16 N -0.70 -9.68 5.32 -14.21 -0.08 -9.76 16 17 C 0.22 3.08 6.27 -83.74 -0.53 2.56 16 18 C -0.18 -1.86 9.90 -39.81 -0.39 -2.25 16 19 C -0.05 -0.47 9.31 -39.49 -0.37 -0.84 16 20 C -0.21 -2.52 5.87 -105.05 -0.62 -3.14 16 21 C 0.40 4.51 7.22 -30.83 -0.22 4.29 16 22 C -0.20 -1.36 9.75 36.01 0.35 -1.01 16 23 O -0.47 -7.02 17.08 5.54 0.09 -6.92 16 24 C -0.03 -0.49 9.55 -39.49 -0.38 -0.86 16 25 C -0.14 -2.13 8.58 -39.81 -0.34 -2.47 16 26 H 0.05 1.20 7.84 -51.93 -0.41 0.80 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.82 5.64 -51.93 -0.29 0.52 16 29 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.39 6.34 8.56 -40.82 -0.35 5.99 16 33 H 0.40 4.16 8.83 -40.82 -0.36 3.80 16 34 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.13 0.79 6.34 -52.49 -0.33 0.46 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.42 6.45 -51.93 -0.34 0.08 16 39 H 0.13 1.84 7.64 -52.49 -0.40 1.43 16 40 H 0.15 2.56 6.41 -52.48 -0.34 2.23 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -31.34 332.17 -8.25 -39.59 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.17 Total: 10.06 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -3.47 Total: -2.82 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.25 Total: -47.38 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.15 Total: -19.54 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.34 -8.25 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.132 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds