Wall clock time and date at job start Tue Mar 31 2020 06:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47337 * 2 1 4 4 H 1.09000 * 109.47056 * 305.00523 * 3 2 1 5 5 C 1.50697 * 109.47073 * 185.00261 * 3 2 1 6 6 H 1.08003 * 119.99869 * 240.00011 * 5 3 2 7 7 C 1.37880 * 120.00302 * 60.00401 * 5 3 2 8 8 N 1.31511 * 119.99730 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99964 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47573 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47351 * 120.00084 * 9 7 5 12 12 H 1.48506 * 109.47136 * 239.99602 * 9 7 5 13 13 N 1.46502 * 109.46832 * 64.99971 * 3 2 1 14 14 C 1.34772 * 120.00351 * 275.00153 * 13 3 2 15 15 O 1.21587 * 119.99852 * 0.02562 * 14 13 3 16 16 N 1.34772 * 120.00243 * 180.02562 * 14 13 3 17 17 C 1.39297 * 120.00286 * 174.67817 * 16 14 13 18 18 C 1.39217 * 119.90285 * 146.14171 * 17 16 14 19 19 C 1.36607 * 120.10611 * 179.71860 * 18 17 16 20 20 C 1.40064 * 119.89147 * 0.55859 * 19 18 17 21 21 C 1.46834 * 120.09815 * 179.70119 * 20 19 18 22 22 C 1.50699 * 120.00006 * 0.02562 * 21 20 19 23 23 O 1.21300 * 119.99848 * 180.02562 * 21 20 19 24 24 C 1.40072 * 119.80176 * 359.71365 * 20 19 18 25 25 C 1.36594 * 119.89249 * 0.02562 * 24 20 19 26 26 H 1.09002 * 109.47391 * 59.99611 * 1 2 3 27 27 H 1.08995 * 109.47378 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47077 * 299.99485 * 1 2 3 29 29 H 1.09001 * 109.47077 * 240.00515 * 2 1 3 30 30 H 1.09002 * 109.47391 * 120.00389 * 2 1 3 31 31 H 0.97001 * 120.00146 * 180.02562 * 8 7 5 32 32 H 0.97002 * 119.99761 * 95.00243 * 13 3 2 33 33 H 0.96999 * 120.00266 * 354.67971 * 16 14 13 34 34 H 1.08003 * 119.94792 * 0.02562 * 18 17 16 35 35 H 1.07995 * 120.05059 * 180.27250 * 19 18 17 36 36 H 1.09003 * 109.46906 * 90.00122 * 22 21 20 37 37 H 1.09001 * 109.47041 * 210.00764 * 22 21 20 38 38 H 1.09003 * 109.46920 * 330.00271 * 22 21 20 39 39 H 1.07995 * 120.05024 * 179.97438 * 24 20 19 40 40 H 1.08007 * 119.94775 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0048 0.8813 -1.3819 10 1 6.5987 1.5472 -0.1949 11 1 6.4970 -0.5175 -1.4632 12 1 6.3989 1.6168 -2.6104 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6644 1.3671 15 8 -0.3415 2.6318 0.4322 16 7 0.0788 3.2673 2.5185 17 6 -1.1332 3.9488 2.6018 18 6 -1.8433 3.9581 3.7992 19 6 -3.0295 4.6300 3.8872 20 6 -3.5367 5.3004 2.7670 21 6 -4.8145 6.0184 2.8546 22 6 -5.5819 6.0353 4.1515 23 8 -5.2524 6.5980 1.8832 24 6 -2.8216 5.2835 1.5627 25 6 -1.6337 4.6136 1.4856 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0617 -2.9496 32 1 2.2720 2.1231 1.9978 33 1 0.6663 3.2267 3.2893 34 1 -1.4533 3.4375 4.6614 35 1 -3.5774 4.6403 4.8178 36 1 -5.2683 6.8920 4.7481 37 1 -6.6489 6.1098 3.9414 38 1 -5.3835 5.1163 4.7030 39 1 -3.2092 5.7987 0.6963 40 1 -1.0818 4.5996 0.5574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:34 Heat of formation + Delta-G solvation = -64.871799 kcal Electronic energy + Delta-G solvation = -22495.942617 eV Core-core repulsion = 19081.859172 eV Total energy + Delta-G solvation = -3414.083445 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.79751 -40.68264 -39.20703 -37.16347 -35.71641 -34.34900 -32.93020 -32.46317 -31.52088 -29.68911 -28.67599 -25.36532 -24.49348 -23.68533 -22.39647 -21.37471 -20.83883 -19.80980 -18.93427 -17.97648 -17.58213 -17.03413 -16.74701 -16.27780 -16.00295 -15.90876 -15.39899 -15.14027 -14.91850 -14.57998 -14.52684 -14.25869 -13.72712 -13.63989 -13.49197 -13.18926 -12.98043 -12.93592 -12.85079 -12.71273 -12.22618 -12.11405 -12.06064 -11.64086 -11.38523 -11.11226 -11.03209 -10.69982 -10.55493 -10.04590 -9.73837 -9.06655 -8.16869 -6.33896 -0.35979 0.47208 1.37974 1.44251 1.45850 1.56863 1.76259 2.21481 2.41831 2.89472 3.13241 3.21222 3.42534 3.83016 3.96593 4.22794 4.34995 4.42819 4.49089 4.54889 4.56785 4.71637 4.74943 4.76793 4.96214 5.05365 5.15342 5.19860 5.27520 5.31583 5.41763 5.43921 5.50530 5.56303 5.60808 5.74638 5.85729 5.98418 6.16228 6.24973 6.61577 6.74519 7.21840 7.34597 7.67689 8.88823 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035326 B = 0.003024 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.420197 B = 9257.384860 C = 9312.605087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.296 3.704 4 H -0.002 1.002 5 C -0.545 4.545 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.287 1.287 13 N -0.712 5.712 14 C 0.690 3.310 15 O -0.611 6.611 16 N -0.675 5.675 17 C 0.201 3.799 18 C -0.158 4.158 19 C -0.029 4.029 20 C -0.217 4.217 21 C 0.396 3.604 22 C -0.192 4.192 23 O -0.517 6.517 24 C -0.055 4.055 25 C -0.163 4.163 26 H 0.022 0.978 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.265 0.735 32 H 0.404 0.596 33 H 0.425 0.575 34 H 0.170 0.830 35 H 0.185 0.815 36 H 0.119 0.881 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.092 6.881 19.618 23.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.192 3.808 4 H 0.016 0.984 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.213 1.213 13 N -0.364 5.364 14 C 0.391 3.609 15 O -0.490 6.490 16 N -0.323 5.323 17 C 0.104 3.896 18 C -0.178 4.178 19 C -0.047 4.047 20 C -0.219 4.219 21 C 0.278 3.722 22 C -0.248 4.248 23 O -0.398 6.398 24 C -0.074 4.074 25 C -0.184 4.184 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.239 0.761 33 H 0.264 0.736 34 H 0.188 0.812 35 H 0.202 0.798 36 H 0.137 0.863 37 H 0.106 0.894 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.874 6.992 18.060 22.210 hybrid contribution 1.627 -0.142 -0.617 1.746 sum -9.246 6.851 17.443 20.897 Atomic orbital electron populations 1.21643 0.97127 0.98915 1.00106 1.21803 0.93556 0.99231 1.01419 1.18289 0.93517 0.88853 0.80153 0.98400 1.21584 0.91243 1.38835 1.06706 0.90832 1.25757 1.03249 0.94432 0.95052 1.70055 1.37005 1.38360 1.09912 0.85322 0.79175 0.77800 0.78169 1.18320 1.20462 1.21283 1.45446 1.13675 1.58741 1.18533 1.16230 0.83025 0.78713 0.82974 1.90924 1.52671 1.65429 1.39995 1.42506 1.20748 1.54668 1.14419 1.18101 0.85903 0.90260 0.95360 1.21019 0.95764 1.03787 0.97248 1.21443 0.93943 0.91234 0.98080 1.20687 0.99052 1.06717 0.95440 1.23089 0.84285 0.74322 0.90456 1.22271 1.01040 1.06947 0.94556 1.90535 1.68997 1.38877 1.41355 1.20994 0.93146 0.95456 0.97847 1.20825 0.98574 0.99695 0.99323 0.95845 0.93771 0.93904 0.91007 0.93764 0.92608 0.76128 0.73556 0.81229 0.79764 0.86257 0.89447 0.86566 0.86693 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.51 71.98 0.61 -4.81 16 2 C -0.12 -5.84 5.45 30.59 0.17 -5.67 16 3 C 0.30 14.73 2.24 44.25 0.10 14.83 16 4 H 0.00 -0.11 7.58 -2.39 -0.02 -0.13 16 5 C -0.55 -27.97 8.73 25.60 0.22 -27.75 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.81 5.29 84.66 0.45 1.25 16 8 N -0.91 -51.73 11.29 21.45 0.24 -51.48 16 9 Si 0.97 41.30 29.54 68.60 2.03 43.32 16 10 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 11 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.71 -27.72 5.03 -461.42 -2.32 -30.04 16 14 C 0.69 26.27 6.86 179.06 1.23 27.50 16 15 O -0.61 -28.76 11.15 -3.99 -0.04 -28.80 16 16 N -0.67 -18.05 5.32 -317.15 -1.69 -19.74 16 17 C 0.20 5.33 6.27 38.43 0.24 5.57 16 18 C -0.16 -2.66 9.90 22.12 0.22 -2.44 16 19 C -0.03 -0.42 9.31 22.33 0.21 -0.21 16 20 C -0.22 -4.81 5.87 -20.14 -0.12 -4.93 16 21 C 0.40 8.30 7.22 27.94 0.20 8.50 16 22 C -0.19 -1.77 9.75 71.24 0.69 -1.07 16 23 O -0.52 -15.73 17.08 -3.09 -0.05 -15.78 16 24 C -0.06 -1.64 9.55 22.33 0.21 -1.42 16 25 C -0.16 -5.32 8.58 22.12 0.19 -5.13 16 26 H 0.02 1.14 7.84 -2.39 -0.02 1.12 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.04 1.86 5.64 -2.39 -0.01 1.84 16 29 H 0.07 3.91 5.95 -2.39 -0.01 3.89 16 30 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.40 12.78 8.56 -92.71 -0.79 11.98 16 33 H 0.43 7.60 8.83 -92.71 -0.82 6.79 16 34 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 35 H 0.19 0.78 6.34 -2.91 -0.02 0.76 16 36 H 0.12 0.62 8.14 -2.39 -0.02 0.61 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.12 0.38 6.45 -2.39 -0.02 0.36 16 39 H 0.12 3.63 7.64 -2.91 -0.02 3.61 16 40 H 0.11 4.23 6.41 -2.91 -0.02 4.21 16 Total: -1.00 -74.78 332.17 2.27 -72.51 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.52 Total: 25.79 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 4.63 Total: 4.22 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -3.76 Total: -101.26 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.10 Total: -44.59 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Total: -74.78 2.27 -72.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.643 kcal (2) G-P(sol) polarization free energy of solvation -74.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds