Wall clock time and date at job start Tue Mar 31 2020 06:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47350 * 2 1 4 4 N 1.46504 * 109.47053 * 120.00132 * 2 1 3 5 5 C 1.46505 * 119.99998 * 121.33692 * 4 2 1 6 6 C 1.50699 * 109.47167 * 270.00280 * 5 4 2 7 7 H 1.08000 * 119.99917 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99986 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99936 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00288 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47186 * 89.99903 * 10 8 6 12 12 H 1.48497 * 109.47008 * 210.00236 * 10 8 6 13 13 H 1.48499 * 109.46738 * 329.99827 * 10 8 6 14 14 C 1.34767 * 120.00043 * 301.33934 * 4 2 1 15 15 O 1.21581 * 120.00427 * 212.74115 * 14 4 2 16 16 C 1.47601 * 120.00302 * 32.74158 * 14 4 2 17 17 C 1.39751 * 120.07530 * 137.30234 * 16 14 4 18 18 C 1.37669 * 119.92158 * 180.27531 * 17 16 14 19 19 C 1.39134 * 120.07658 * 359.50510 * 18 17 16 20 20 N 1.39442 * 119.92597 * 180.25240 * 19 18 17 21 21 C 1.34779 * 120.00096 * 34.48996 * 20 19 18 22 22 O 1.21274 * 119.99602 * 5.20267 * 21 20 19 23 23 C 1.39134 * 120.14461 * 0.49949 * 19 18 17 24 24 C 1.37665 * 120.07652 * 359.75422 * 23 19 18 25 25 H 1.08997 * 109.47198 * 253.40106 * 1 2 3 26 26 H 1.09001 * 109.46806 * 13.40267 * 1 2 3 27 27 H 1.09004 * 109.47147 * 133.39747 * 1 2 3 28 28 H 1.09005 * 109.47368 * 239.99980 * 2 1 3 29 29 H 1.09002 * 109.47165 * 223.97002 * 3 2 1 30 30 H 1.08993 * 109.47021 * 343.97139 * 3 2 1 31 31 H 1.09002 * 109.46858 * 103.97391 * 3 2 1 32 32 H 1.09006 * 109.46815 * 29.99982 * 5 4 2 33 33 H 1.08992 * 109.46897 * 150.00053 * 5 4 2 34 34 H 0.97006 * 120.00576 * 179.97438 * 9 8 6 35 35 H 1.07992 * 120.03535 * 0.02562 * 17 16 14 36 36 H 1.07999 * 119.96051 * 179.72393 * 18 17 16 37 37 H 0.96996 * 119.99888 * 214.49193 * 20 19 18 38 38 H 1.07998 * 119.99728 * 185.20251 * 21 20 19 39 39 H 1.08002 * 119.95902 * 179.72749 * 23 19 18 40 40 H 1.07996 * 120.03768 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8846 -1.8645 1.0619 6 6 2.0375 -3.1092 0.9967 7 1 0.9615 -3.0334 1.0503 8 6 2.6362 -4.3446 0.8696 9 7 3.9465 -4.4368 0.8048 10 14 1.5862 -5.8875 0.7880 11 1 1.2481 -6.1818 -0.6277 12 1 2.3393 -7.0298 1.3650 13 1 0.3364 -5.6771 1.5619 14 6 1.6706 -0.2462 2.4200 15 8 2.4451 -0.3589 3.3505 16 6 0.3495 0.3773 2.6310 17 6 -0.4014 0.0601 3.7661 18 6 -1.6357 0.6392 3.9569 19 6 -2.1312 1.5473 3.0264 20 7 -3.3794 2.1360 3.2254 21 6 -3.7968 2.4252 4.4739 22 8 -3.0507 2.2613 5.4158 23 6 -1.3861 1.8653 1.8952 24 6 -0.1534 1.2858 1.6957 25 1 -0.3633 -0.2936 0.9848 26 1 -0.3633 0.9997 -0.2382 27 1 -0.3634 -0.7061 -0.7467 28 1 1.8934 -0.5138 -0.8900 29 1 2.8585 1.5385 -0.7135 30 1 1.2300 2.1143 -0.2837 31 1 2.3951 1.7023 0.9973 32 1 3.4745 -1.7782 0.1494 33 1 3.5519 -1.9238 1.9217 34 1 4.3678 -5.3061 0.7158 35 1 -0.0157 -0.6417 4.4907 36 1 -2.2185 0.3911 4.8316 37 1 -3.9474 2.3374 2.4654 38 1 -4.7956 2.8029 4.6354 39 1 -1.7755 2.5672 1.1727 40 1 0.4242 1.5328 0.8172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073227397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:31 Heat of formation + Delta-G solvation = 42.772374 kcal Electronic energy + Delta-G solvation = -23578.777855 eV Core-core repulsion = 20169.362211 eV Total energy + Delta-G solvation = -3409.415644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.09736 -39.88655 -37.65608 -36.41350 -34.85484 -33.24962 -31.75803 -30.36560 -29.87200 -27.19017 -26.77840 -24.44215 -23.32578 -22.53475 -21.69784 -21.23577 -18.59480 -18.46013 -17.40684 -16.53808 -16.26473 -15.78080 -15.27107 -15.10675 -14.72277 -14.42666 -14.35445 -13.97419 -13.87465 -13.53597 -13.23481 -12.83618 -12.30272 -12.23536 -12.12695 -11.92933 -11.69413 -11.22883 -11.09669 -11.03529 -10.86828 -10.60018 -10.39913 -10.13907 -10.06408 -9.90502 -9.64096 -9.09462 -8.56629 -8.45791 -7.84618 -7.53918 -6.05997 -4.12401 1.09175 1.59595 2.40954 2.96307 3.25959 3.28058 3.35293 3.39518 3.84515 4.05993 4.42073 4.58940 4.92086 4.98003 5.00211 5.07169 5.26543 5.28599 5.44067 5.51274 5.58002 5.66146 5.76729 5.85141 5.88257 6.10266 6.18296 6.24715 6.28023 6.37060 6.48632 6.54630 6.68935 7.01856 7.11663 7.15224 7.44336 7.61796 7.82098 7.92526 8.21520 8.42967 8.82601 9.00653 9.53498 11.01193 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.004666 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.276881 B = 5998.877930 C = 6566.173033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.137 3.863 3 C -0.179 4.179 4 N -0.610 5.610 5 C 0.248 3.752 6 C -0.533 4.533 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.572 3.428 15 O -0.531 6.531 16 C -0.159 4.159 17 C -0.042 4.042 18 C -0.145 4.145 19 C 0.158 3.842 20 N -0.679 5.679 21 C 0.487 3.513 22 O -0.530 6.530 23 C -0.188 4.188 24 C -0.070 4.070 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.411 0.589 38 H 0.142 0.858 39 H 0.125 0.875 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.609 15.015 -2.564 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.032 3.968 3 C -0.237 4.237 4 N -0.343 5.343 5 C 0.130 3.870 6 C -0.572 4.572 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.360 3.640 15 O -0.408 6.408 16 C -0.163 4.163 17 C -0.062 4.062 18 C -0.165 4.165 19 C 0.063 3.937 20 N -0.327 5.327 21 C 0.256 3.744 22 O -0.402 6.402 23 C -0.208 4.208 24 C -0.088 4.088 25 H 0.115 0.885 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.247 0.753 38 H 0.158 0.842 39 H 0.143 0.857 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -14.541 14.692 -1.338 20.715 hybrid contribution -1.024 -0.954 -0.589 1.518 sum -15.565 13.739 -1.927 20.850 Atomic orbital electron populations 1.23728 0.96347 1.01198 1.04340 1.20997 0.93484 0.92194 0.90122 1.22723 1.01439 0.96260 1.03262 1.47997 1.51759 1.31297 1.03201 1.19330 0.89289 0.79987 0.98440 1.21534 0.93592 0.91115 1.50935 0.92293 1.24941 0.94974 0.99013 0.95069 1.69939 1.08539 1.24889 1.49753 0.86517 0.80349 0.82553 0.78143 1.20596 1.21076 1.19888 1.17974 0.85360 0.77387 0.83233 1.90713 1.51705 1.55235 1.43132 1.20301 0.97282 1.01815 0.96904 1.21053 0.92847 0.97233 0.95026 1.20876 0.97430 0.97571 1.00596 1.17866 0.86205 0.93533 0.96056 1.44071 1.17572 1.60666 1.10413 1.22881 0.92642 0.77319 0.81520 1.90777 1.57264 1.50535 1.41638 1.20646 0.95999 1.04557 0.99603 1.22777 0.95950 0.92342 0.97682 0.88470 0.91334 0.92481 0.88544 0.91494 0.91380 0.91628 0.94980 0.93738 0.92661 0.85085 0.85021 0.75315 0.84246 0.85681 0.80655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.79 7.72 37.16 0.29 -2.50 16 2 C 0.14 2.22 3.27 -67.93 -0.22 2.00 16 3 C -0.18 -2.32 8.37 37.16 0.31 -2.01 16 4 N -0.61 -13.08 2.38 -168.66 -0.40 -13.48 16 5 C 0.25 6.49 5.32 -5.19 -0.03 6.46 16 6 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 7 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 10 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 14 C 0.57 12.62 5.84 -12.44 -0.07 12.55 16 15 O -0.53 -13.77 16.80 5.29 0.09 -13.68 16 16 C -0.16 -2.86 4.27 -104.95 -0.45 -3.30 16 17 C -0.04 -0.74 9.65 -39.22 -0.38 -1.12 16 18 C -0.14 -2.19 8.62 -39.46 -0.34 -2.53 16 19 C 0.16 1.94 6.26 -83.73 -0.52 1.42 16 20 N -0.68 -5.45 5.32 -13.73 -0.07 -5.52 16 21 C 0.49 4.13 12.36 54.06 0.67 4.80 16 22 O -0.53 -7.53 14.91 5.56 0.08 -7.44 16 23 C -0.19 -2.16 9.69 -39.46 -0.38 -2.54 16 24 C -0.07 -0.97 4.87 -39.22 -0.19 -1.16 16 25 H 0.10 1.58 4.01 -61.25 -0.25 1.33 16 26 H 0.07 0.72 5.24 -51.93 -0.27 0.44 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.10 1.59 7.80 -51.93 -0.41 1.18 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.66 6.17 -51.93 -0.32 0.34 16 31 H 0.06 0.97 6.82 -51.93 -0.35 0.62 16 32 H 0.03 0.85 7.93 -51.93 -0.41 0.43 16 33 H 0.04 1.32 7.36 -51.93 -0.38 0.94 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 36 H 0.13 2.00 6.48 -52.49 -0.34 1.66 16 37 H 0.41 1.62 8.92 -40.82 -0.36 1.26 16 38 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.18 2.18 1.06 -53.80 -0.06 2.12 16 LS Contribution 323.02 15.07 4.87 4.87 Total: -1.00 -36.37 323.02 -6.27 -42.64 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.81 Total: 3.08 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.74 Total: -1.44 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.26 Total: -44.60 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.17 Total: -21.12 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.37 -6.27 -42.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073227397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.417 kcal (2) G-P(sol) polarization free energy of solvation -36.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds