Wall clock time and date at job start Tue Mar 31 2020 06:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47350 * 2 1 4 4 N 1.46504 * 109.47053 * 120.00132 * 2 1 3 5 5 C 1.46505 * 119.99998 * 121.33692 * 4 2 1 6 6 C 1.50699 * 109.47167 * 270.00280 * 5 4 2 7 7 H 1.08000 * 119.99917 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99986 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99936 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00288 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47186 * 89.99903 * 10 8 6 12 12 H 1.48497 * 109.47008 * 210.00236 * 10 8 6 13 13 H 1.48499 * 109.46738 * 329.99827 * 10 8 6 14 14 C 1.34767 * 120.00043 * 301.33934 * 4 2 1 15 15 O 1.21581 * 120.00427 * 212.74115 * 14 4 2 16 16 C 1.47601 * 120.00302 * 32.74158 * 14 4 2 17 17 C 1.39751 * 120.07530 * 137.30234 * 16 14 4 18 18 C 1.37669 * 119.92158 * 180.27531 * 17 16 14 19 19 C 1.39134 * 120.07658 * 359.50510 * 18 17 16 20 20 N 1.39442 * 119.92597 * 180.25240 * 19 18 17 21 21 C 1.34779 * 120.00096 * 34.48996 * 20 19 18 22 22 O 1.21274 * 119.99602 * 5.20267 * 21 20 19 23 23 C 1.39134 * 120.14461 * 0.49949 * 19 18 17 24 24 C 1.37665 * 120.07652 * 359.75422 * 23 19 18 25 25 H 1.08997 * 109.47198 * 253.40106 * 1 2 3 26 26 H 1.09001 * 109.46806 * 13.40267 * 1 2 3 27 27 H 1.09004 * 109.47147 * 133.39747 * 1 2 3 28 28 H 1.09005 * 109.47368 * 239.99980 * 2 1 3 29 29 H 1.09002 * 109.47165 * 223.97002 * 3 2 1 30 30 H 1.08993 * 109.47021 * 343.97139 * 3 2 1 31 31 H 1.09002 * 109.46858 * 103.97391 * 3 2 1 32 32 H 1.09006 * 109.46815 * 29.99982 * 5 4 2 33 33 H 1.08992 * 109.46897 * 150.00053 * 5 4 2 34 34 H 0.97006 * 120.00576 * 179.97438 * 9 8 6 35 35 H 1.07992 * 120.03535 * 0.02562 * 17 16 14 36 36 H 1.07999 * 119.96051 * 179.72393 * 18 17 16 37 37 H 0.96996 * 119.99888 * 214.49193 * 20 19 18 38 38 H 1.07998 * 119.99728 * 185.20251 * 21 20 19 39 39 H 1.08002 * 119.95902 * 179.72749 * 23 19 18 40 40 H 1.07996 * 120.03768 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8846 -1.8645 1.0619 6 6 2.0375 -3.1092 0.9967 7 1 0.9615 -3.0334 1.0503 8 6 2.6362 -4.3446 0.8696 9 7 3.9465 -4.4368 0.8048 10 14 1.5862 -5.8875 0.7880 11 1 1.2481 -6.1818 -0.6277 12 1 2.3393 -7.0298 1.3650 13 1 0.3364 -5.6771 1.5619 14 6 1.6706 -0.2462 2.4200 15 8 2.4451 -0.3589 3.3505 16 6 0.3495 0.3773 2.6310 17 6 -0.4014 0.0601 3.7661 18 6 -1.6357 0.6392 3.9569 19 6 -2.1312 1.5473 3.0264 20 7 -3.3794 2.1360 3.2254 21 6 -3.7968 2.4252 4.4739 22 8 -3.0507 2.2613 5.4158 23 6 -1.3861 1.8653 1.8952 24 6 -0.1534 1.2858 1.6957 25 1 -0.3633 -0.2936 0.9848 26 1 -0.3633 0.9997 -0.2382 27 1 -0.3634 -0.7061 -0.7467 28 1 1.8934 -0.5138 -0.8900 29 1 2.8585 1.5385 -0.7135 30 1 1.2300 2.1143 -0.2837 31 1 2.3951 1.7023 0.9973 32 1 3.4745 -1.7782 0.1494 33 1 3.5519 -1.9238 1.9217 34 1 4.3678 -5.3061 0.7158 35 1 -0.0157 -0.6417 4.4907 36 1 -2.2185 0.3911 4.8316 37 1 -3.9474 2.3374 2.4654 38 1 -4.7956 2.8029 4.6354 39 1 -1.7755 2.5672 1.1727 40 1 0.4242 1.5328 0.8172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073227397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:30 Heat of formation + Delta-G solvation = 15.760145 kcal Electronic energy + Delta-G solvation = -23579.949193 eV Core-core repulsion = 20169.362211 eV Total energy + Delta-G solvation = -3410.586982 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.35500 -40.88511 -38.98161 -37.88939 -35.95813 -35.11901 -33.45494 -31.59411 -31.05523 -29.08592 -27.93059 -25.84919 -24.58950 -24.12521 -22.94429 -22.31701 -19.93153 -19.33659 -18.68135 -18.38392 -17.70109 -17.36087 -16.48044 -16.38161 -16.31114 -15.86732 -15.36026 -15.22399 -15.03662 -14.79018 -14.63931 -14.16338 -14.03399 -13.61316 -13.59079 -13.26713 -13.18850 -12.95666 -12.73995 -12.48611 -12.28907 -12.15776 -12.08376 -11.69027 -11.40920 -11.12873 -10.94190 -10.75448 -10.66071 -9.61277 -9.38142 -8.91055 -8.23594 -6.40828 -0.07612 0.47668 1.34983 1.38120 1.47644 1.53884 1.84195 2.27276 2.31952 2.40954 2.83215 3.04725 3.65428 3.81466 3.87273 3.94098 4.14427 4.16712 4.27922 4.38950 4.53462 4.61331 4.68598 4.70471 4.88555 4.98137 4.99850 5.06797 5.13098 5.20114 5.22457 5.25608 5.40493 5.43686 5.53802 5.58945 5.90405 5.98704 6.04814 6.49834 6.67653 6.75880 7.17469 7.23040 7.34473 8.82606 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.004666 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.276881 B = 5998.877930 C = 6566.173033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.123 3.877 3 C -0.174 4.174 4 N -0.613 5.613 5 C 0.263 3.737 6 C -0.546 4.546 7 H 0.057 0.943 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.969 3.031 11 H -0.261 1.261 12 H -0.282 1.282 13 H -0.272 1.272 14 C 0.565 3.435 15 O -0.593 6.593 16 C -0.188 4.188 17 C -0.066 4.066 18 C -0.158 4.158 19 C 0.173 3.827 20 N -0.663 5.663 21 C 0.488 3.512 22 O -0.591 6.591 23 C -0.169 4.169 24 C -0.057 4.057 25 H 0.077 0.923 26 H 0.119 0.881 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.042 0.958 32 H 0.023 0.977 33 H -0.007 1.007 34 H 0.268 0.732 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.437 0.563 38 H 0.209 0.791 39 H 0.182 0.818 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.924 17.368 -5.153 26.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.020 3.980 3 C -0.231 4.231 4 N -0.345 5.345 5 C 0.142 3.858 6 C -0.585 4.585 7 H 0.075 0.925 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.793 3.207 11 H -0.185 1.185 12 H -0.207 1.207 13 H -0.197 1.197 14 C 0.356 3.644 15 O -0.475 6.475 16 C -0.192 4.192 17 C -0.085 4.085 18 C -0.178 4.178 19 C 0.077 3.923 20 N -0.312 5.312 21 C 0.261 3.739 22 O -0.467 6.467 23 C -0.189 4.189 24 C -0.074 4.074 25 H 0.095 0.905 26 H 0.137 0.863 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.136 0.864 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.011 0.989 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.142 0.858 37 H 0.278 0.722 38 H 0.224 0.776 39 H 0.200 0.800 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -18.928 17.089 -4.007 25.814 hybrid contribution 0.264 -1.606 0.233 1.644 sum -18.665 15.484 -3.774 24.543 Atomic orbital electron populations 1.23697 0.93942 1.04230 1.03287 1.21431 0.95623 0.93569 0.87395 1.22689 1.03556 0.94493 1.02374 1.47985 1.51170 1.30205 1.05177 1.18802 0.89319 0.82119 0.95537 1.21752 0.93542 0.92073 1.51094 0.92486 1.25885 0.96267 1.02504 0.94347 1.70070 1.10356 1.25944 1.50366 0.85394 0.78303 0.77973 0.79031 1.18538 1.20707 1.19713 1.18749 0.86543 0.76694 0.82405 1.90654 1.53779 1.58182 1.44876 1.19948 0.95439 1.04694 0.99137 1.20912 0.94493 0.98168 0.94963 1.20817 0.96529 0.98911 1.01577 1.18018 0.87730 0.91603 0.94990 1.44128 1.16039 1.59299 1.11764 1.24152 0.93991 0.75466 0.80324 1.90784 1.59215 1.53061 1.43667 1.21147 0.94199 1.03758 0.99786 1.22948 0.97008 0.90696 0.96774 0.90532 0.86301 0.92227 0.89240 0.90437 0.86435 0.93938 0.95883 0.98889 0.92329 0.88237 0.85775 0.72240 0.77618 0.80029 0.78930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.88 7.72 71.98 0.56 -4.33 16 2 C 0.12 3.90 3.27 44.99 0.15 4.05 16 3 C -0.17 -4.10 8.37 71.98 0.60 -3.50 16 4 N -0.61 -27.83 2.38 -805.80 -1.92 -29.75 16 5 C 0.26 14.82 5.32 85.63 0.46 15.28 16 6 C -0.55 -31.88 9.39 25.60 0.24 -31.64 16 7 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 8 C 0.01 0.53 5.46 84.65 0.46 0.99 16 9 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 10 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 11 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 13 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 14 C 0.56 26.81 5.84 86.72 0.51 27.32 16 15 O -0.59 -34.07 16.80 -3.97 -0.07 -34.14 16 16 C -0.19 -6.98 4.27 -20.07 -0.09 -7.07 16 17 C -0.07 -2.46 9.65 22.50 0.22 -2.24 16 18 C -0.16 -4.79 8.62 22.35 0.19 -4.60 16 19 C 0.17 3.64 6.26 38.36 0.24 3.88 16 20 N -0.66 -7.24 5.32 -315.75 -1.68 -8.92 16 21 C 0.49 6.24 12.36 129.79 1.60 7.85 16 22 O -0.59 -15.86 14.91 -3.01 -0.04 -15.90 16 23 C -0.17 -2.98 9.69 22.35 0.22 -2.77 16 24 C -0.06 -1.42 4.87 22.50 0.11 -1.31 16 25 H 0.08 2.36 4.01 -11.15 -0.04 2.31 16 26 H 0.12 1.74 5.24 -2.39 -0.01 1.73 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.09 2.93 7.80 -2.38 -0.02 2.91 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.12 1.59 6.17 -2.39 -0.01 1.58 16 31 H 0.04 1.23 6.82 -2.39 -0.02 1.21 16 32 H 0.02 1.31 7.93 -2.38 -0.02 1.29 16 33 H -0.01 -0.46 7.36 -2.39 -0.02 -0.48 16 34 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 35 H 0.10 4.16 8.06 -2.91 -0.02 4.14 16 36 H 0.12 3.89 6.48 -2.91 -0.02 3.88 16 37 H 0.44 0.47 8.92 -92.71 -0.83 -0.35 16 38 H 0.21 -0.06 8.06 -2.91 -0.02 -0.08 16 39 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.19 3.98 1.06 -4.15 0.00 3.98 16 Total: -1.00 -90.83 323.02 4.29 -86.54 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.22 Total: 9.75 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 5.46 Total: 1.92 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -3.31 Total: -95.27 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.11 Total: -50.04 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -90.83 4.29 -86.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073227397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.297 kcal (2) G-P(sol) polarization free energy of solvation -90.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds