Wall clock time and date at job start Tue Mar 31 2020 06:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 H 1.09005 * 109.77005 * 55.75371 * 3 2 1 5 5 C 1.53425 * 109.77562 * 176.55559 * 3 2 1 6 6 N 1.46750 * 108.61054 * 182.83385 * 5 3 2 7 7 C 1.46903 * 110.99772 * 184.98960 * 6 5 3 8 8 C 1.50702 * 109.46988 * 290.46512 * 7 6 5 9 9 O 1.21295 * 119.99914 * 354.39153 * 8 7 6 10 10 N 1.34772 * 119.99737 * 174.38933 * 8 7 6 11 11 C 1.37101 * 119.99841 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00204 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00344 * 180.02562 * 11 10 8 14 14 N 1.31416 * 119.99901 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00372 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47115 * 89.99926 * 15 13 11 17 17 H 1.48502 * 109.47301 * 210.00170 * 15 13 11 18 18 H 1.48497 * 109.46985 * 330.00079 * 15 13 11 19 19 C 1.39856 * 112.13105 * 309.77157 * 6 5 3 20 20 C 1.39141 * 118.59610 * 199.78501 * 19 6 5 21 21 C 1.38069 * 120.23561 * 180.76361 * 20 19 6 22 22 C 1.38254 * 120.12082 * 359.48666 * 21 20 19 23 23 C 1.38183 * 120.02349 * 0.40880 * 22 21 20 24 24 C 1.38770 * 120.20575 * 359.76357 * 23 22 21 25 25 O 1.36151 * 118.74685 * 180.26560 * 24 23 22 26 26 H 1.09004 * 109.47236 * 299.99626 * 1 2 3 27 27 H 1.08998 * 109.47604 * 59.99751 * 1 2 3 28 28 H 1.09000 * 109.46771 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47161 * 239.99918 * 2 1 3 30 30 H 1.09007 * 109.47133 * 119.99979 * 2 1 3 31 31 H 1.08996 * 109.61221 * 302.56648 * 5 3 2 32 32 H 1.08994 * 109.61213 * 62.92137 * 5 3 2 33 33 H 1.09001 * 109.47053 * 50.46489 * 7 6 5 34 34 H 1.08999 * 109.47384 * 170.46612 * 7 6 5 35 35 H 0.96997 * 120.00729 * 0.02562 * 10 8 7 36 36 H 0.96996 * 119.99904 * 179.97438 * 14 13 11 37 37 H 1.07997 * 119.88660 * 0.48417 * 20 19 6 38 38 H 1.08003 * 119.94003 * 179.73664 * 21 20 19 39 39 H 1.08003 * 119.99202 * 180.13427 * 22 21 20 40 40 H 1.08001 * 119.89695 * 179.79270 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6186 1.9825 0.8480 5 6 3.5718 1.4515 0.0867 6 7 4.0288 2.8444 0.1536 7 6 5.4955 2.9194 0.1191 8 6 6.0568 2.3744 1.4071 9 8 5.3094 2.0587 2.3088 10 7 7.3892 2.2377 1.5571 11 6 7.8998 1.7424 2.7291 12 1 7.2344 1.4613 3.5320 13 6 9.2735 1.6019 2.8840 14 7 10.0833 1.9444 1.9073 15 14 9.9692 0.9264 4.4805 16 1 10.0791 -0.5516 4.3864 17 1 11.3142 1.5085 4.7200 18 1 9.0674 1.2851 5.6044 19 6 3.4629 3.6336 -0.8528 20 6 4.0855 4.8316 -1.1890 21 6 3.5472 5.6445 -2.1666 22 6 2.3913 5.2665 -2.8243 23 6 1.7677 4.0773 -2.4982 24 6 2.3004 3.2565 -1.5144 25 8 1.6647 2.0889 -1.2207 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.8906 0.9185 0.9824 32 1 3.9910 0.9681 -0.7956 33 1 5.8698 2.3305 -0.7183 34 1 5.8036 3.9581 -0.0007 35 1 7.9869 2.4905 0.8362 36 1 11.0422 1.8467 2.0156 37 1 4.9906 5.1290 -0.6804 38 1 4.0321 6.5755 -2.4208 39 1 1.9732 5.9030 -3.5902 40 1 0.8630 3.7856 -3.0110 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075840560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:24 Heat of formation + Delta-G solvation = -38.418432 kcal Electronic energy + Delta-G solvation = -23159.179370 eV Core-core repulsion = 19746.243029 eV Total energy + Delta-G solvation = -3412.936341 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.03552 -38.35926 -37.66372 -36.04089 -33.95499 -33.87988 -31.33534 -30.30994 -29.68985 -29.02480 -26.11140 -24.50490 -24.02860 -22.08858 -21.87064 -19.97489 -19.23351 -18.24595 -17.93532 -17.00944 -16.23769 -15.66846 -15.06002 -14.88807 -14.69315 -14.52762 -14.20984 -14.03552 -13.69883 -13.58454 -13.52507 -13.34730 -12.78245 -12.53210 -12.13008 -11.83437 -11.73510 -11.58018 -11.31782 -11.30104 -11.08115 -10.99231 -10.67093 -10.43981 -10.31814 -10.25888 -9.91412 -9.56229 -8.42515 -8.37048 -8.04232 -7.37886 -6.48242 -3.89570 1.42229 1.50355 3.13240 3.22807 3.25777 3.29158 3.60593 3.78524 3.95139 4.15814 4.52917 4.75611 4.81571 4.98343 5.01459 5.08775 5.17211 5.21875 5.27243 5.40280 5.48640 5.51111 5.61137 5.63521 5.73756 5.79585 5.83200 5.87850 6.02839 6.07851 6.16684 6.19797 6.27140 6.32618 6.60653 6.75440 7.04458 7.22607 7.49041 7.58202 7.97876 8.52859 9.10433 9.45155 9.95920 10.69226 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.004203 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.565034 B = 6660.686481 C = 7958.158248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.091 3.909 4 H 0.083 0.917 5 C 0.022 3.978 6 N -0.461 5.461 7 C 0.043 3.957 8 C 0.440 3.560 9 O -0.578 6.578 10 N -0.559 5.559 11 C -0.301 4.301 12 H 0.104 0.896 13 C 0.024 3.976 14 N -0.900 5.900 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.269 1.269 19 C 0.057 3.943 20 C -0.133 4.133 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.125 4.125 24 C 0.085 3.915 25 O -0.314 6.314 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.393 0.607 36 H 0.273 0.727 37 H 0.132 0.868 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.339 1.923 -9.699 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.034 3.966 4 H 0.101 0.899 5 C -0.105 4.105 6 N -0.174 5.174 7 C -0.086 4.086 8 C 0.225 3.775 9 O -0.462 6.462 10 N -0.196 5.196 11 C -0.430 4.430 12 H 0.122 0.878 13 C -0.178 4.178 14 N -0.541 5.541 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.043 4.043 20 C -0.154 4.154 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.144 4.144 24 C 0.038 3.962 25 O -0.229 6.229 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.136 0.864 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.226 0.774 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.869 1.706 -8.678 16.449 hybrid contribution 1.304 -0.308 -0.108 1.344 sum -12.566 1.397 -8.786 15.396 Atomic orbital electron populations 1.21710 0.94863 1.01638 1.02375 1.21545 0.96978 0.93186 1.03517 1.22720 0.93792 0.94433 0.85614 0.89866 1.22932 0.95117 0.88290 1.04111 1.58160 1.08003 1.10255 1.41008 1.22163 0.85008 1.03263 0.98151 1.19594 0.83322 0.85631 0.88954 1.90514 1.58115 1.54885 1.42697 1.41842 1.04730 1.56255 1.16757 1.19702 0.90942 1.38811 0.93581 0.87825 1.25276 0.95912 0.97518 0.99077 1.69611 1.04300 1.47800 1.32341 0.85846 0.78152 0.78845 0.81398 1.20360 1.20852 1.19352 1.19097 0.95743 0.96437 0.92979 1.20993 1.01163 0.93884 0.99348 1.20871 0.96687 0.99707 0.96965 1.20781 0.96412 0.96290 1.00907 1.20379 1.01022 0.94081 0.98966 1.18622 0.92813 0.87572 0.97236 1.86170 1.61829 1.33826 1.41095 0.92627 0.92064 0.92534 0.90914 0.89472 0.86379 0.93125 0.92118 0.87908 0.77406 0.91756 0.85086 0.85925 0.85814 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.81 37.16 0.36 -1.12 16 2 C -0.11 -1.31 5.67 -26.73 -0.15 -1.47 16 3 C 0.09 1.31 3.01 -26.51 -0.08 1.23 16 4 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 5 C 0.02 0.37 4.63 -3.69 -0.02 0.35 16 6 N -0.46 -8.28 4.27 -172.19 -0.74 -9.02 16 7 C 0.04 0.78 5.13 -4.97 -0.03 0.76 16 8 C 0.44 10.20 7.45 -10.99 -0.08 10.12 16 9 O -0.58 -15.26 14.45 5.54 0.08 -15.18 16 10 N -0.56 -13.88 5.29 -10.96 -0.06 -13.93 16 11 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 12 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 13 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 14 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 15 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 C 0.06 0.92 5.82 -83.59 -0.49 0.44 16 20 C -0.13 -1.92 9.05 -39.31 -0.36 -2.27 16 21 C -0.12 -1.50 10.03 -39.64 -0.40 -1.89 16 22 C -0.12 -1.43 10.04 -39.60 -0.40 -1.83 16 23 C -0.13 -1.62 9.94 -39.40 -0.39 -2.01 16 24 C 0.09 1.30 6.47 -39.12 -0.25 1.05 16 25 O -0.31 -4.73 9.61 -20.22 -0.19 -4.93 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.64 7.84 -51.93 -0.41 0.23 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 0.95 8.14 -51.92 -0.42 0.52 16 31 H 0.12 2.20 6.50 -51.93 -0.34 1.86 16 32 H 0.05 0.81 8.05 -51.93 -0.42 0.39 16 33 H 0.06 1.02 8.02 -51.93 -0.42 0.60 16 34 H 0.10 1.69 5.43 -51.93 -0.28 1.40 16 35 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 37 H 0.13 1.80 5.82 -52.49 -0.31 1.50 16 38 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 39 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 40 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -30.68 329.70 -8.13 -38.82 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -5.38 Total: 11.40 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.51 Total: -4.46 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.07 Total: -46.26 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.11 Total: -20.11 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.68 -8.13 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075840560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.398 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds