Wall clock time and date at job start Tue Mar 31 2020 06:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 H 1.09005 * 109.77005 * 55.75371 * 3 2 1 5 5 C 1.53425 * 109.77562 * 176.55559 * 3 2 1 6 6 N 1.46750 * 108.61054 * 182.83385 * 5 3 2 7 7 C 1.46903 * 110.99772 * 184.98960 * 6 5 3 8 8 C 1.50702 * 109.46988 * 290.46512 * 7 6 5 9 9 O 1.21295 * 119.99914 * 354.39153 * 8 7 6 10 10 N 1.34772 * 119.99737 * 174.38933 * 8 7 6 11 11 C 1.37101 * 119.99841 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00204 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00344 * 180.02562 * 11 10 8 14 14 N 1.31416 * 119.99901 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00372 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47115 * 89.99926 * 15 13 11 17 17 H 1.48502 * 109.47301 * 210.00170 * 15 13 11 18 18 H 1.48497 * 109.46985 * 330.00079 * 15 13 11 19 19 C 1.39856 * 112.13105 * 309.77157 * 6 5 3 20 20 C 1.39141 * 118.59610 * 199.78501 * 19 6 5 21 21 C 1.38069 * 120.23561 * 180.76361 * 20 19 6 22 22 C 1.38254 * 120.12082 * 359.48666 * 21 20 19 23 23 C 1.38183 * 120.02349 * 0.40880 * 22 21 20 24 24 C 1.38770 * 120.20575 * 359.76357 * 23 22 21 25 25 O 1.36151 * 118.74685 * 180.26560 * 24 23 22 26 26 H 1.09004 * 109.47236 * 299.99626 * 1 2 3 27 27 H 1.08998 * 109.47604 * 59.99751 * 1 2 3 28 28 H 1.09000 * 109.46771 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47161 * 239.99918 * 2 1 3 30 30 H 1.09007 * 109.47133 * 119.99979 * 2 1 3 31 31 H 1.08996 * 109.61221 * 302.56648 * 5 3 2 32 32 H 1.08994 * 109.61213 * 62.92137 * 5 3 2 33 33 H 1.09001 * 109.47053 * 50.46489 * 7 6 5 34 34 H 1.08999 * 109.47384 * 170.46612 * 7 6 5 35 35 H 0.96997 * 120.00729 * 0.02562 * 10 8 7 36 36 H 0.96996 * 119.99904 * 179.97438 * 14 13 11 37 37 H 1.07997 * 119.88660 * 0.48417 * 20 19 6 38 38 H 1.08003 * 119.94003 * 179.73664 * 21 20 19 39 39 H 1.08003 * 119.99202 * 180.13427 * 22 21 20 40 40 H 1.08001 * 119.89695 * 179.79270 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6186 1.9825 0.8480 5 6 3.5718 1.4515 0.0867 6 7 4.0288 2.8444 0.1536 7 6 5.4955 2.9194 0.1191 8 6 6.0568 2.3744 1.4071 9 8 5.3094 2.0587 2.3088 10 7 7.3892 2.2377 1.5571 11 6 7.8998 1.7424 2.7291 12 1 7.2344 1.4613 3.5320 13 6 9.2735 1.6019 2.8840 14 7 10.0833 1.9444 1.9073 15 14 9.9692 0.9264 4.4805 16 1 10.0791 -0.5516 4.3864 17 1 11.3142 1.5085 4.7200 18 1 9.0674 1.2851 5.6044 19 6 3.4629 3.6336 -0.8528 20 6 4.0855 4.8316 -1.1890 21 6 3.5472 5.6445 -2.1666 22 6 2.3913 5.2665 -2.8243 23 6 1.7677 4.0773 -2.4982 24 6 2.3004 3.2565 -1.5144 25 8 1.6647 2.0889 -1.2207 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.8906 0.9185 0.9824 32 1 3.9910 0.9681 -0.7956 33 1 5.8698 2.3305 -0.7183 34 1 5.8036 3.9581 -0.0007 35 1 7.9869 2.4905 0.8362 36 1 11.0422 1.8467 2.0156 37 1 4.9906 5.1290 -0.6804 38 1 4.0321 6.5755 -2.4208 39 1 1.9732 5.9030 -3.5902 40 1 0.8630 3.7856 -3.0110 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075840560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:24 Heat of formation + Delta-G solvation = -58.218376 kcal Electronic energy + Delta-G solvation = -23160.037960 eV Core-core repulsion = 19746.243029 eV Total energy + Delta-G solvation = -3413.794931 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.21930 -40.13854 -38.72390 -37.42260 -35.91804 -34.88288 -33.34119 -31.37953 -30.71254 -30.44575 -27.60068 -26.11794 -25.21748 -23.27585 -22.88576 -21.10551 -21.02866 -19.92168 -19.39712 -18.29484 -17.55046 -17.16225 -16.61506 -16.32613 -16.07546 -15.85051 -15.49874 -15.28333 -15.08618 -14.99036 -14.71669 -14.64533 -14.06794 -13.65405 -13.56331 -13.46814 -13.05601 -12.77126 -12.74671 -12.50516 -12.44385 -12.26533 -12.13700 -11.96315 -11.71853 -11.52378 -11.44349 -11.14189 -10.27605 -10.05592 -9.45567 -8.57470 -8.49918 -5.99269 0.37092 0.45867 1.35910 1.41086 1.53579 1.95321 2.11507 2.26160 2.45389 2.85899 3.13387 3.19408 3.46017 3.64956 3.81742 3.86936 4.08297 4.13262 4.21313 4.26284 4.29571 4.33304 4.48871 4.51021 4.56273 4.56921 4.65982 4.85515 4.94909 5.04115 5.08620 5.18779 5.34132 5.37046 5.38241 5.61120 5.68848 5.85075 5.95735 6.05329 6.44979 6.54253 7.07724 7.48538 8.03202 8.67302 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.004203 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.565034 B = 6660.686481 C = 7958.158248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C 0.097 3.903 4 H 0.068 0.932 5 C 0.024 3.976 6 N -0.481 5.481 7 C 0.056 3.944 8 C 0.441 3.559 9 O -0.614 6.614 10 N -0.567 5.567 11 C -0.334 4.334 12 H 0.081 0.919 13 C -0.010 4.010 14 N -0.918 5.918 15 Si 0.993 3.007 16 H -0.270 1.270 17 H -0.270 1.270 18 H -0.273 1.273 19 C 0.028 3.972 20 C -0.145 4.145 21 C -0.119 4.119 22 C -0.112 4.112 23 C -0.127 4.127 24 C 0.062 3.938 25 O -0.316 6.316 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.397 0.603 36 H 0.279 0.721 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.918 2.779 -11.230 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C 0.041 3.959 4 H 0.086 0.914 5 C -0.102 4.102 6 N -0.195 5.195 7 C -0.073 4.073 8 C 0.228 3.772 9 O -0.500 6.500 10 N -0.205 5.205 11 C -0.463 4.463 12 H 0.099 0.901 13 C -0.210 4.210 14 N -0.559 5.559 15 Si 0.817 3.183 16 H -0.196 1.196 17 H -0.195 1.195 18 H -0.198 1.198 19 C -0.070 4.070 20 C -0.166 4.166 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.146 4.146 24 C 0.015 3.985 25 O -0.231 6.231 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.140 0.860 35 H 0.231 0.769 36 H 0.088 0.912 37 H 0.149 0.851 38 H 0.171 0.829 39 H 0.179 0.821 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.453 2.579 -10.244 17.902 hybrid contribution 1.423 -0.477 0.274 1.526 sum -13.030 2.101 -9.970 16.541 Atomic orbital electron populations 1.21677 0.93420 1.02821 1.02134 1.21573 0.98164 0.91210 1.03932 1.22691 0.92108 0.95898 0.85227 0.91394 1.22846 0.96818 0.87914 1.02643 1.58173 1.07453 1.10941 1.42961 1.22010 0.85837 1.04142 0.95269 1.20439 0.82568 0.84063 0.90163 1.90485 1.58867 1.56032 1.44592 1.41880 1.05447 1.56757 1.16369 1.19665 0.91482 1.40919 0.94274 0.90143 1.26041 0.95595 0.97174 1.02168 1.69670 1.04740 1.47824 1.33664 0.84924 0.77589 0.78477 0.77340 1.19550 1.19502 1.19762 1.19249 0.96800 0.97116 0.93843 1.21171 1.01467 0.93720 1.00228 1.21258 0.96718 1.00190 0.95629 1.21255 0.95469 0.95716 1.00619 1.20750 1.01654 0.94166 0.98060 1.18997 0.93070 0.88179 0.98270 1.86160 1.61874 1.34088 1.41016 0.92723 0.92417 0.90623 0.90346 0.89187 0.89157 0.92983 0.90690 0.85963 0.76939 0.91179 0.85083 0.82942 0.82068 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.81 71.98 0.71 -2.03 16 2 C -0.11 -2.54 5.67 30.59 0.17 -2.37 16 3 C 0.10 2.88 3.01 30.74 0.09 2.97 16 4 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 5 C 0.02 0.85 4.63 86.47 0.40 1.25 16 6 N -0.48 -17.70 4.27 -698.68 -2.98 -20.69 16 7 C 0.06 2.08 5.13 85.56 0.44 2.52 16 8 C 0.44 21.20 7.45 87.66 0.65 21.85 16 9 O -0.61 -33.97 14.45 -3.07 -0.04 -34.01 16 10 N -0.57 -29.03 5.29 -306.98 -1.62 -30.65 16 11 C -0.33 -18.80 9.68 84.04 0.81 -17.98 16 12 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 13 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 14 N -0.92 -49.03 13.05 21.66 0.28 -48.74 16 15 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 C 0.03 0.91 5.82 38.25 0.22 1.13 16 20 C -0.15 -3.98 9.05 22.45 0.20 -3.78 16 21 C -0.12 -2.51 10.03 22.23 0.22 -2.28 16 22 C -0.11 -2.13 10.04 22.26 0.22 -1.91 16 23 C -0.13 -2.96 9.94 22.38 0.22 -2.74 16 24 C 0.06 1.85 6.47 22.57 0.15 1.99 16 25 O -0.32 -9.43 9.61 -95.27 -0.92 -10.35 16 26 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.06 1.14 7.84 -2.39 -0.02 1.12 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.09 3.60 6.50 -2.39 -0.02 3.59 16 32 H 0.05 1.73 8.05 -2.39 -0.02 1.71 16 33 H 0.08 2.54 8.02 -2.39 -0.02 2.52 16 34 H 0.12 4.01 5.43 -2.39 -0.01 4.00 16 35 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 36 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 37 H 0.13 3.47 5.82 -2.91 -0.02 3.45 16 38 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 39 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -67.48 329.70 2.06 -65.43 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.33 Total: 35.96 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 4.99 Total: -1.41 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -4.32 Total: -100.09 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -0.96 Total: -44.36 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -67.48 2.06 -65.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075840560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.209 kcal (2) G-P(sol) polarization free energy of solvation -67.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds