Wall clock time and date at job start Tue Mar 31 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47286 * 2 1 4 4 C 1.53001 * 109.47394 * 239.99686 * 2 1 3 5 5 C 1.50712 * 109.47006 * 119.99679 * 2 1 3 6 6 O 1.21276 * 119.99630 * 0.02562 * 5 2 1 7 7 N 1.34771 * 120.00044 * 179.97438 * 5 2 1 8 8 N 1.40103 * 119.99917 * 180.02562 * 7 5 2 9 9 C 1.34773 * 119.99953 * 180.02562 * 8 7 5 10 10 O 1.21551 * 120.00088 * 359.97438 * 9 8 7 11 11 C 1.47890 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.39921 * 120.02384 * 359.97438 * 11 9 8 13 13 C 1.38329 * 120.35936 * 180.02562 * 12 11 9 14 14 C 1.37755 * 120.41120 * 359.97247 * 13 12 11 15 15 C 1.40752 * 120.03467 * 0.02562 * 14 13 12 16 16 C 1.41441 * 120.16946 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00554 * 24.41546 * 16 15 14 18 18 C 1.39937 * 119.99766 * 204.40716 * 16 15 14 19 19 N 1.30828 * 120.00202 * 17.85166 * 18 16 15 20 20 Si 1.86804 * 120.00094 * 197.84627 * 18 16 15 21 21 H 1.48503 * 109.46837 * 90.00406 * 20 18 16 22 22 H 1.48497 * 109.47376 * 210.00134 * 20 18 16 23 23 H 1.48500 * 109.46917 * 330.00618 * 20 18 16 24 24 C 1.38995 * 120.02459 * 179.97438 * 11 9 8 25 25 H 1.08995 * 109.47278 * 300.00406 * 1 2 3 26 26 H 1.09000 * 109.46685 * 60.00504 * 1 2 3 27 27 H 1.08995 * 109.46995 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47000 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46847 * 299.99397 * 3 2 1 30 30 H 1.08999 * 109.46887 * 59.99865 * 3 2 1 31 31 H 1.09000 * 109.47068 * 299.99928 * 4 2 1 32 32 H 1.08991 * 109.47287 * 59.99981 * 4 2 1 33 33 H 1.08998 * 109.47355 * 180.02562 * 4 2 1 34 34 H 0.97004 * 120.00139 * 0.02562 * 7 5 2 35 35 H 0.96996 * 119.99620 * 0.02562 * 8 7 5 36 36 H 1.08005 * 119.81807 * 0.02562 * 12 11 9 37 37 H 1.08002 * 119.79428 * 179.97438 * 13 12 11 38 38 H 1.07996 * 119.97894 * 179.97438 * 14 13 12 39 39 H 0.96991 * 120.00411 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.20287 * 359.70146 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 8 1.2441 -1.1716 2.0286 7 7 3.3573 -0.8340 1.4437 8 7 3.8243 -1.4949 2.5874 9 6 5.1493 -1.6180 2.8007 10 8 5.9392 -1.1561 2.0006 11 6 5.6422 -2.3151 4.0083 12 6 4.7334 -2.8465 4.9299 13 6 5.1868 -3.4994 6.0620 14 6 6.5377 -3.6346 6.2950 15 6 7.4669 -3.1065 5.3791 16 6 8.8547 -3.2442 5.6153 17 1 9.2197 -4.0492 6.2358 18 6 9.7548 -2.3372 5.0447 19 7 9.3268 -1.1851 4.5964 20 14 11.5676 -2.7715 4.9234 21 1 11.8266 -3.4586 3.6326 22 1 12.3798 -1.5305 4.9952 23 1 11.9373 -3.6708 6.0458 24 6 7.0086 -2.4429 4.2285 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2491 32 1 1.6768 -0.2076 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 3.9877 -0.4654 0.8051 35 1 3.1939 -1.8637 3.2256 36 1 3.6721 -2.7464 4.7564 37 1 4.4772 -3.9058 6.7676 38 1 6.8840 -4.1453 7.1814 39 1 9.9506 -0.5566 4.2006 40 1 7.7137 -2.0385 3.5174 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077220661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:25 Heat of formation + Delta-G solvation = -38.482920 kcal Electronic energy + Delta-G solvation = -22518.613989 eV Core-core repulsion = 19105.674852 eV Total energy + Delta-G solvation = -3412.939138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48974 -39.04502 -37.14189 -35.88755 -35.04120 -33.81738 -31.44964 -29.65885 -29.43918 -27.64409 -27.33793 -25.39314 -23.80370 -22.35668 -21.03917 -20.67275 -19.18934 -17.78464 -17.59634 -16.76290 -15.78791 -15.48824 -15.27717 -14.89424 -14.55054 -14.40791 -14.14008 -13.98788 -13.56434 -13.28782 -12.83363 -12.65730 -12.58840 -12.51413 -12.23379 -11.97685 -11.74212 -11.31209 -11.24182 -11.21827 -11.17200 -10.99969 -10.78316 -10.55825 -10.16242 -9.98786 -9.76645 -9.30072 -9.26995 -8.17301 -7.69530 -7.59766 -6.86447 -4.47673 2.01321 2.06972 2.51118 2.75478 3.04494 3.07768 3.11117 3.71043 3.87418 4.05243 4.44825 4.54992 4.58041 4.62766 4.93952 5.27442 5.32207 5.44041 5.50353 5.52224 5.53910 5.60337 5.64526 5.82272 5.93106 6.01592 6.04262 6.21410 6.61645 6.82156 6.90601 6.92648 7.00116 7.14172 7.28976 7.60749 7.66697 7.83954 7.94027 8.05448 8.11416 8.42375 8.73047 8.74930 8.79257 10.08328 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.003491 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.682683 B = 8018.968710 C = 8870.083833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 C -0.145 4.145 4 C -0.145 4.145 5 C 0.517 3.483 6 O -0.543 6.543 7 N -0.517 5.517 8 N -0.531 5.531 9 C 0.568 3.432 10 O -0.546 6.546 11 C -0.121 4.121 12 C -0.219 4.219 13 C -0.094 4.094 14 C -0.208 4.208 15 C 0.099 3.901 16 C -0.458 4.458 17 H 0.083 0.917 18 C 0.073 3.927 19 N -0.783 5.783 20 Si 0.912 3.088 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.087 4.087 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.428 0.572 35 H 0.431 0.569 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.285 0.715 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.790 3.395 -9.257 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.079 4.079 3 C -0.203 4.203 4 C -0.203 4.203 5 C 0.303 3.697 6 O -0.419 6.419 7 N -0.263 5.263 8 N -0.282 5.282 9 C 0.359 3.641 10 O -0.423 6.423 11 C -0.125 4.125 12 C -0.239 4.239 13 C -0.112 4.112 14 C -0.228 4.228 15 C 0.096 3.904 16 C -0.487 4.487 17 H 0.101 0.899 18 C -0.146 4.146 19 N -0.407 5.407 20 Si 0.736 3.264 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.108 4.108 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.270 0.730 35 H 0.274 0.726 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.688 3.633 -9.357 14.662 hybrid contribution 0.787 -0.046 0.012 0.789 sum -9.900 3.587 -9.345 14.079 Atomic orbital electron populations 1.21669 0.91395 1.03078 1.02256 1.20756 0.98208 0.96350 0.92554 1.21939 1.01622 0.93496 1.03224 1.21935 1.01599 1.00806 0.95912 1.20836 0.80360 0.80379 0.88124 1.90705 1.54813 1.49304 1.47100 1.44886 1.07029 1.56166 1.18263 1.45198 1.07762 1.57843 1.17422 1.19124 0.79206 0.78941 0.86819 1.90709 1.54791 1.49604 1.47217 1.19178 0.95256 1.04277 0.93837 1.20380 0.96144 1.08877 0.98481 1.20447 0.95323 0.99124 0.96345 1.21136 0.92534 1.09121 1.00022 1.17586 0.93384 0.89780 0.89638 1.19613 0.90686 1.11269 1.27095 0.89909 1.25981 1.01979 0.93748 0.92934 1.69782 1.37971 1.05081 1.27853 0.86246 0.81175 0.79040 0.79935 1.19111 1.20197 1.18531 1.21608 0.91983 0.99575 0.97595 0.91729 0.91727 0.91743 0.91819 0.90945 0.91720 0.91742 0.90947 0.91836 0.72964 0.72566 0.89059 0.88605 0.88392 0.90372 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 7.76 37.16 0.29 -0.85 16 2 C -0.07 -0.72 0.87 -155.66 -0.14 -0.85 16 3 C -0.15 -1.19 8.37 37.16 0.31 -0.88 16 4 C -0.14 -1.17 8.37 37.16 0.31 -0.86 16 5 C 0.52 7.23 6.60 -10.98 -0.07 7.15 16 6 O -0.54 -9.28 15.82 5.56 0.09 -9.19 16 7 N -0.52 -7.83 6.04 31.22 0.19 -7.64 16 8 N -0.53 -9.56 6.21 30.54 0.19 -9.37 16 9 C 0.57 12.25 7.89 -12.31 -0.10 12.15 16 10 O -0.55 -12.95 16.17 5.32 0.09 -12.86 16 11 C -0.12 -2.81 5.87 -105.04 -0.62 -3.43 16 12 C -0.22 -4.62 9.55 -38.92 -0.37 -4.99 16 13 C -0.09 -1.99 10.01 -39.72 -0.40 -2.39 16 14 C -0.21 -4.85 9.78 -38.81 -0.38 -5.23 16 15 C 0.10 2.55 5.57 -106.87 -0.60 1.96 16 16 C -0.46 -11.74 9.05 -37.73 -0.34 -12.08 16 17 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 18 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 19 N -0.78 -20.20 10.96 55.55 0.61 -19.59 16 20 Si 0.91 18.35 29.60 -169.99 -5.03 13.32 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 22 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 24 C -0.09 -2.27 8.23 -38.44 -0.32 -2.58 16 25 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 28 H 0.06 0.53 7.56 -51.93 -0.39 0.13 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 34 H 0.43 5.97 6.83 -182.59 -1.25 4.72 16 35 H 0.43 7.47 6.02 -182.60 -1.10 6.37 16 36 H 0.09 1.66 6.38 -52.48 -0.33 1.33 16 37 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 39 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 40 H 0.14 3.77 5.75 -52.49 -0.30 3.47 16 LS Contribution 338.51 15.07 5.10 5.10 Total: -1.00 -29.88 338.51 -8.39 -38.27 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -7.12 Total: 13.14 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.50 Total: -11.18 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.99 Total: -36.59 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: 0.17 Total: -22.06 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.88 -8.39 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077220661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.216 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds