Wall clock time and date at job start Tue Mar 31 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47286 * 2 1 4 4 C 1.53001 * 109.47394 * 239.99686 * 2 1 3 5 5 C 1.50712 * 109.47006 * 119.99679 * 2 1 3 6 6 O 1.21276 * 119.99630 * 0.02562 * 5 2 1 7 7 N 1.34771 * 120.00044 * 179.97438 * 5 2 1 8 8 N 1.40103 * 119.99917 * 180.02562 * 7 5 2 9 9 C 1.34773 * 119.99953 * 180.02562 * 8 7 5 10 10 O 1.21551 * 120.00088 * 359.97438 * 9 8 7 11 11 C 1.47890 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.39921 * 120.02384 * 359.97438 * 11 9 8 13 13 C 1.38329 * 120.35936 * 180.02562 * 12 11 9 14 14 C 1.37755 * 120.41120 * 359.97247 * 13 12 11 15 15 C 1.40752 * 120.03467 * 0.02562 * 14 13 12 16 16 C 1.41441 * 120.16946 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00554 * 24.41546 * 16 15 14 18 18 C 1.39937 * 119.99766 * 204.40716 * 16 15 14 19 19 N 1.30828 * 120.00202 * 17.85166 * 18 16 15 20 20 Si 1.86804 * 120.00094 * 197.84627 * 18 16 15 21 21 H 1.48503 * 109.46837 * 90.00406 * 20 18 16 22 22 H 1.48497 * 109.47376 * 210.00134 * 20 18 16 23 23 H 1.48500 * 109.46917 * 330.00618 * 20 18 16 24 24 C 1.38995 * 120.02459 * 179.97438 * 11 9 8 25 25 H 1.08995 * 109.47278 * 300.00406 * 1 2 3 26 26 H 1.09000 * 109.46685 * 60.00504 * 1 2 3 27 27 H 1.08995 * 109.46995 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47000 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46847 * 299.99397 * 3 2 1 30 30 H 1.08999 * 109.46887 * 59.99865 * 3 2 1 31 31 H 1.09000 * 109.47068 * 299.99928 * 4 2 1 32 32 H 1.08991 * 109.47287 * 59.99981 * 4 2 1 33 33 H 1.08998 * 109.47355 * 180.02562 * 4 2 1 34 34 H 0.97004 * 120.00139 * 0.02562 * 7 5 2 35 35 H 0.96996 * 119.99620 * 0.02562 * 8 7 5 36 36 H 1.08005 * 119.81807 * 0.02562 * 12 11 9 37 37 H 1.08002 * 119.79428 * 179.97438 * 13 12 11 38 38 H 1.07996 * 119.97894 * 179.97438 * 14 13 12 39 39 H 0.96991 * 120.00411 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.20287 * 359.70146 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2306 6 8 1.2441 -1.1716 2.0286 7 7 3.3573 -0.8340 1.4437 8 7 3.8243 -1.4949 2.5874 9 6 5.1493 -1.6180 2.8007 10 8 5.9392 -1.1561 2.0006 11 6 5.6422 -2.3151 4.0083 12 6 4.7334 -2.8465 4.9299 13 6 5.1868 -3.4994 6.0620 14 6 6.5377 -3.6346 6.2950 15 6 7.4669 -3.1065 5.3791 16 6 8.8547 -3.2442 5.6153 17 1 9.2197 -4.0492 6.2358 18 6 9.7548 -2.3372 5.0447 19 7 9.3268 -1.1851 4.5964 20 14 11.5676 -2.7715 4.9234 21 1 11.8266 -3.4586 3.6326 22 1 12.3798 -1.5305 4.9952 23 1 11.9373 -3.6708 6.0458 24 6 7.0086 -2.4429 4.2285 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2491 32 1 1.6768 -0.2076 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 3.9877 -0.4654 0.8051 35 1 3.1939 -1.8637 3.2256 36 1 3.6721 -2.7464 4.7564 37 1 4.4772 -3.9058 6.7676 38 1 6.8840 -4.1453 7.1814 39 1 9.9506 -0.5566 4.2006 40 1 7.7137 -2.0385 3.5174 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077220661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:24 Heat of formation + Delta-G solvation = -57.094532 kcal Electronic energy + Delta-G solvation = -22519.421049 eV Core-core repulsion = 19105.674852 eV Total energy + Delta-G solvation = -3413.746198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.77492 -40.59027 -38.90033 -36.85944 -36.47165 -35.63534 -33.03965 -31.41398 -31.13085 -28.27820 -28.05847 -27.23793 -25.17971 -23.77979 -22.83570 -22.13774 -20.57930 -19.40667 -19.00895 -18.07903 -17.38840 -16.88454 -16.71327 -16.46406 -16.05154 -15.80291 -15.51304 -15.12025 -14.85554 -14.56693 -14.55130 -14.33296 -13.53124 -13.40559 -13.11981 -13.02436 -12.95633 -12.83777 -12.65884 -12.61642 -12.46292 -12.21358 -11.98113 -11.96462 -11.92835 -11.54960 -11.27539 -11.09793 -10.89228 -9.75324 -9.45824 -9.36884 -8.68566 -6.40075 0.23205 0.72223 0.96774 1.33157 1.38208 1.48533 1.52255 1.97982 2.19322 2.73416 2.89823 3.42455 3.64867 3.74416 3.85351 3.88596 4.17940 4.35911 4.51661 4.68379 4.68613 4.79799 4.84324 4.90819 4.92974 4.97142 5.04580 5.11274 5.18969 5.27301 5.29045 5.33217 5.45343 5.49250 5.60341 5.81903 5.90040 6.01654 6.23935 6.41242 6.56314 6.75058 6.85842 6.89618 7.24384 8.28365 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.003491 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.682683 B = 8018.968710 C = 8870.083833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.067 4.067 3 C -0.145 4.145 4 C -0.144 4.144 5 C 0.516 3.484 6 O -0.574 6.574 7 N -0.516 5.516 8 N -0.521 5.521 9 C 0.568 3.432 10 O -0.575 6.575 11 C -0.130 4.130 12 C -0.205 4.205 13 C -0.092 4.092 14 C -0.213 4.213 15 C 0.069 3.931 16 C -0.493 4.493 17 H 0.086 0.914 18 C 0.031 3.969 19 N -0.822 5.822 20 Si 0.984 3.016 21 H -0.265 1.265 22 H -0.269 1.269 23 H -0.252 1.252 24 C -0.122 4.122 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.434 0.566 35 H 0.435 0.565 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.112 0.888 39 H 0.288 0.712 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.313 3.467 -9.960 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.071 4.071 3 C -0.202 4.202 4 C -0.201 4.201 5 C 0.304 3.696 6 O -0.452 6.452 7 N -0.264 5.264 8 N -0.269 5.269 9 C 0.359 3.641 10 O -0.454 6.454 11 C -0.134 4.134 12 C -0.224 4.224 13 C -0.110 4.110 14 C -0.233 4.233 15 C 0.067 3.933 16 C -0.522 4.522 17 H 0.104 0.896 18 C -0.185 4.185 19 N -0.447 5.447 20 Si 0.804 3.196 21 H -0.190 1.190 22 H -0.194 1.194 23 H -0.175 1.175 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.277 0.723 35 H 0.280 0.720 36 H 0.144 0.856 37 H 0.156 0.844 38 H 0.130 0.870 39 H 0.099 0.901 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.258 3.701 -10.054 16.280 hybrid contribution 1.002 -0.074 0.233 1.032 sum -11.256 3.627 -9.820 15.372 Atomic orbital electron populations 1.21701 0.90613 1.02696 1.03252 1.20881 0.98634 0.96848 0.90778 1.21979 1.01543 0.92364 1.04316 1.21974 1.01555 1.00606 0.96012 1.21879 0.79289 0.79482 0.88937 1.90687 1.55368 1.50604 1.48517 1.45182 1.07759 1.56161 1.17287 1.44873 1.06634 1.57020 1.18420 1.18834 0.80153 0.78882 0.86259 1.90686 1.55822 1.50889 1.48015 1.19420 0.94837 1.04168 0.95021 1.20802 0.97508 1.06728 0.97407 1.20895 0.95180 0.98098 0.96831 1.21433 0.93386 1.08516 0.99938 1.17933 0.94365 0.90692 0.90316 1.19887 0.91433 1.12172 1.28729 0.89593 1.26852 1.06421 0.93165 0.92022 1.69870 1.39559 1.06179 1.29102 0.85171 0.75464 0.78967 0.79961 1.19015 1.19411 1.17511 1.21418 0.92878 1.02007 0.97933 0.92912 0.88544 0.92836 0.92032 0.88015 0.92512 0.92407 0.88043 0.91997 0.72291 0.72044 0.85628 0.84426 0.86994 0.90114 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 7.76 71.98 0.56 -1.40 16 2 C -0.07 -1.16 0.87 -52.92 -0.05 -1.20 16 3 C -0.14 -2.01 8.37 71.98 0.60 -1.41 16 4 C -0.14 -1.96 8.37 71.98 0.60 -1.36 16 5 C 0.52 13.83 6.60 87.66 0.58 14.41 16 6 O -0.57 -19.08 15.82 -3.02 -0.05 -19.13 16 7 N -0.52 -15.24 6.04 -173.53 -1.05 -16.29 16 8 N -0.52 -18.43 6.21 -175.57 -1.09 -19.52 16 9 C 0.57 24.80 7.89 86.80 0.68 25.49 16 10 O -0.57 -28.07 16.17 -3.87 -0.06 -28.14 16 11 C -0.13 -6.11 5.87 -20.13 -0.12 -6.23 16 12 C -0.20 -8.29 9.55 22.70 0.22 -8.07 16 13 C -0.09 -3.69 10.01 22.18 0.22 -3.47 16 14 C -0.21 -9.82 9.78 22.77 0.22 -9.60 16 15 C 0.07 3.69 5.57 -21.32 -0.12 3.57 16 16 C -0.49 -26.18 9.05 23.47 0.21 -25.97 16 17 H 0.09 4.30 7.91 -2.91 -0.02 4.28 16 18 C 0.03 1.57 5.14 85.25 0.44 2.01 16 19 N -0.82 -44.43 10.96 21.82 0.24 -44.19 16 20 Si 0.98 38.50 29.60 68.60 2.03 40.54 16 21 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 22 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 24 C -0.12 -6.59 8.23 23.01 0.19 -6.40 16 25 H 0.05 0.95 8.10 -2.39 -0.02 0.94 16 26 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 28 H 0.06 0.90 7.56 -2.39 -0.02 0.88 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.88 7.56 -2.39 -0.02 0.86 16 34 H 0.43 11.86 6.83 -213.31 -1.46 10.40 16 35 H 0.43 14.50 6.02 -213.32 -1.28 13.21 16 36 H 0.13 4.18 6.38 -2.91 -0.02 4.17 16 37 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 38 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 39 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 40 H 0.11 6.30 5.75 -2.91 -0.02 6.28 16 Total: -1.00 -67.74 338.51 2.60 -65.14 By element: Atomic # 1 Polarization: 42.91 SS G_CDS: -1.67 Total: 41.24 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 4.25 Total: -19.65 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -1.90 Total: -80.00 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -0.11 Total: -47.27 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.54 kcal Total: -67.74 2.60 -65.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077220661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.049 kcal (2) G-P(sol) polarization free energy of solvation -67.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds