Wall clock time and date at job start Tue Mar 31 2020 06:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 N 1.46501 * 109.47271 * 180.02562 * 3 2 1 5 5 C 1.36932 * 120.00048 * 264.15843 * 4 3 2 6 6 H 1.08003 * 119.99811 * 146.03879 * 5 4 3 7 7 C 1.38813 * 120.00087 * 326.04445 * 5 4 3 8 8 N 1.31615 * 120.00000 * 335.72813 * 7 5 4 9 9 Si 1.86803 * 119.99923 * 155.73522 * 7 5 4 10 10 H 1.48494 * 109.47109 * 89.99938 * 9 7 5 11 11 H 1.48501 * 109.46922 * 210.00113 * 9 7 5 12 12 H 1.48495 * 109.47016 * 329.99551 * 9 7 5 13 13 C 1.46497 * 119.99938 * 84.15781 * 4 3 2 14 14 C 1.50700 * 109.47300 * 270.00040 * 13 4 3 15 15 C 1.32571 * 120.00270 * 124.99662 * 14 13 4 16 16 C 1.47810 * 120.00233 * 180.02562 * 15 14 13 17 17 C 1.39551 * 120.14082 * 15.73485 * 16 15 14 18 18 C 1.37957 * 119.85511 * 179.74664 * 17 16 15 19 19 C 1.38364 * 120.13794 * 0.52805 * 18 17 16 20 20 C 1.38322 * 120.29007 * 359.74241 * 19 18 17 21 21 C 1.37996 * 120.13841 * 359.97438 * 20 19 18 22 22 N 1.48005 * 120.06645 * 179.97438 * 21 20 19 23 23 O 1.21807 * 120.00061 * 35.38189 * 22 21 20 24 24 O 1.21799 * 120.00092 * 215.37246 * 22 21 20 25 25 H 1.09000 * 109.47020 * 299.99764 * 1 2 3 26 26 H 1.09001 * 109.46904 * 59.99891 * 1 2 3 27 27 H 1.08995 * 109.46829 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47020 * 240.00236 * 2 1 3 29 29 H 1.08996 * 109.47359 * 120.00067 * 2 1 3 30 30 H 1.09000 * 109.47011 * 60.00230 * 3 2 1 31 31 H 1.09001 * 109.47351 * 299.99835 * 3 2 1 32 32 H 0.96992 * 120.00256 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47492 * 150.00062 * 13 4 3 34 34 H 1.09000 * 109.47189 * 30.00041 * 13 4 3 35 35 H 1.07994 * 120.00241 * 305.00420 * 14 13 4 36 36 H 1.08002 * 119.99750 * 0.02562 * 15 14 13 37 37 H 1.07998 * 120.07280 * 0.02562 * 17 16 15 38 38 H 1.07995 * 119.93097 * 180.25139 * 18 17 16 39 39 H 1.08004 * 119.85348 * 179.72247 * 19 18 17 40 40 H 1.08003 * 119.93154 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.5631 1.1788 6 1 5.1321 1.0514 1.3108 7 6 3.6741 2.3428 2.2048 8 7 2.8326 3.3172 1.9313 9 14 4.1741 2.0093 3.9735 10 1 5.3797 2.8098 4.3064 11 1 3.0621 2.3879 4.8820 12 1 4.4778 0.5651 4.1380 13 6 4.2370 1.3136 -1.2631 14 6 4.4881 -0.1440 -1.5516 15 6 4.0940 -0.6693 -2.7032 16 6 4.3398 -2.0991 -2.9860 17 6 4.6777 -2.9704 -1.9495 18 6 4.9007 -4.3048 -2.2193 19 6 4.8007 -4.7776 -3.5158 20 6 4.4717 -3.9182 -4.5484 21 6 4.2404 -2.5823 -4.2910 22 7 3.8891 -1.6639 -5.3972 23 8 3.2005 -2.0588 -6.3211 24 8 4.2883 -0.5133 -5.3836 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 2.4717 3.8618 2.6482 33 1 5.1894 1.8381 -1.1861 34 1 3.6476 1.7476 -2.0708 35 1 4.9890 -0.7608 -0.8202 36 1 3.5934 -0.0525 -3.4349 37 1 4.7599 -2.6017 -0.9378 38 1 5.1582 -4.9809 -1.4175 39 1 4.9806 -5.8224 -3.7224 40 1 4.3956 -4.2933 -5.5583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:55 Heat of formation + Delta-G solvation = 39.001973 kcal Electronic energy + Delta-G solvation = -22829.460075 eV Core-core repulsion = 19419.880934 eV Total energy + Delta-G solvation = -3409.579141 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.26402 -40.41504 -38.34635 -37.67532 -35.66281 -34.20917 -33.20717 -32.91235 -30.98972 -27.95936 -27.41627 -26.87363 -24.65651 -23.62912 -22.86990 -21.84676 -20.58222 -20.10925 -19.72525 -18.69775 -18.53847 -17.50025 -16.87222 -16.29995 -15.91778 -15.84612 -15.53121 -15.08705 -14.99015 -14.53496 -14.34925 -13.97625 -13.54012 -13.31019 -13.15940 -13.00476 -12.72968 -12.69244 -12.62349 -12.42836 -12.33117 -12.25341 -12.17666 -11.92110 -11.87503 -11.73505 -11.38911 -11.11726 -10.55209 -10.50109 -9.38793 -8.65026 -7.85836 -5.42392 -1.13887 -0.23306 0.17134 0.42712 1.36506 1.46811 1.49957 1.58652 2.46066 2.52871 3.20184 3.31320 3.44002 3.70589 3.77758 3.98827 4.03879 4.11513 4.19338 4.28289 4.43671 4.50075 4.65624 4.66465 4.75793 4.84363 4.88656 4.97510 5.03692 5.07279 5.18261 5.19060 5.23600 5.31558 5.48721 5.53471 5.60272 5.63971 5.69848 5.82559 6.43183 6.47552 7.13864 7.82299 8.35711 9.13029 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.004111 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.022244 B = 6809.201882 C = 7182.701771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C 0.150 3.850 4 N -0.594 5.594 5 C -0.270 4.270 6 H 0.064 0.936 7 C -0.036 4.036 8 N -0.919 5.919 9 Si 0.957 3.043 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.268 1.268 13 C 0.160 3.840 14 C -0.078 4.078 15 C -0.178 4.178 16 C 0.012 3.988 17 C -0.128 4.128 18 C -0.051 4.051 19 C -0.111 4.111 20 C -0.060 4.060 21 C -0.068 4.068 22 N 0.031 4.969 23 O -0.168 6.168 24 O -0.190 6.190 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.012 0.988 32 H 0.252 0.748 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.150 0.850 38 H 0.180 0.820 39 H 0.188 0.812 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 -18.939 -8.152 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.025 3.975 4 N -0.314 5.314 5 C -0.400 4.400 6 H 0.082 0.918 7 C -0.233 4.233 8 N -0.563 5.563 9 Si 0.785 3.215 10 H -0.211 1.211 11 H -0.220 1.220 12 H -0.193 1.193 13 C 0.035 3.965 14 C -0.099 4.099 15 C -0.198 4.198 16 C 0.011 3.989 17 C -0.146 4.146 18 C -0.069 4.069 19 C -0.129 4.129 20 C -0.079 4.079 21 C -0.151 4.151 22 N 0.546 4.454 23 O -0.386 6.386 24 O -0.400 6.400 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.031 0.969 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.167 0.833 38 H 0.198 0.802 39 H 0.205 0.795 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.011 -19.179 -7.512 20.817 hybrid contribution -0.100 1.011 0.417 1.098 sum 2.910 -18.168 -7.095 19.720 Atomic orbital electron populations 1.21653 0.95293 1.01608 1.01259 1.21929 0.95677 0.98971 1.00110 1.20892 0.82979 0.93946 0.99732 1.43998 1.01368 1.84373 1.01671 1.19296 1.06087 1.23027 0.91547 0.91810 1.25785 1.00292 0.94647 1.02611 1.70187 1.35778 1.18111 1.32184 0.85461 0.77051 0.78413 0.80613 1.21076 1.21978 1.19282 1.20076 0.96462 0.91408 0.88581 1.24314 0.92776 0.98940 0.93848 1.21596 1.06446 0.92611 0.99104 1.19017 0.94375 0.94861 0.90690 1.21664 1.00147 0.94013 0.98824 1.21994 0.91783 0.94536 0.98580 1.21691 0.98815 1.01653 0.90773 1.21261 0.94899 0.88348 1.03394 1.21356 1.16428 0.91427 0.85870 1.43946 0.97973 1.01676 1.01779 1.94472 1.34646 1.80853 1.28586 1.94555 1.56960 1.04157 1.84376 0.93517 0.93001 0.91671 0.93449 0.93804 0.91591 0.96924 0.93918 0.92374 0.93940 0.86317 0.87143 0.83260 0.80241 0.79529 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.91 71.98 0.71 -3.88 16 2 C -0.13 -4.98 6.09 30.60 0.19 -4.79 16 3 C 0.15 7.11 5.28 86.38 0.46 7.56 16 4 N -0.59 -28.88 2.44 -706.35 -1.73 -30.61 16 5 C -0.27 -14.18 9.47 84.03 0.80 -13.39 16 6 H 0.06 3.26 7.94 -2.91 -0.02 3.24 16 7 C -0.04 -1.94 4.85 84.86 0.41 -1.53 16 8 N -0.92 -53.01 11.49 21.65 0.25 -52.76 16 9 Si 0.96 43.04 29.62 68.60 2.03 45.07 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 13 C 0.16 6.70 6.15 85.63 0.53 7.23 16 14 C -0.08 -2.71 8.25 24.53 0.20 -2.50 16 15 C -0.18 -5.84 8.34 23.65 0.20 -5.64 16 16 C 0.01 0.33 5.83 -20.12 -0.12 0.21 16 17 C -0.13 -2.62 9.34 22.52 0.21 -2.40 16 18 C -0.05 -0.63 10.03 22.23 0.22 -0.41 16 19 C -0.11 -1.21 10.04 22.32 0.22 -0.99 16 20 C -0.06 -1.05 9.64 22.23 0.21 -0.84 16 21 C -0.07 -1.79 6.54 36.63 0.24 -1.55 16 22 N 0.03 0.97 4.30 -45.88 -0.20 0.78 16 23 O -0.17 -5.30 18.90 18.88 0.36 -4.94 16 24 O -0.19 -6.79 16.41 18.89 0.31 -6.48 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.79 7.17 -2.39 -0.02 1.77 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 3.56 5.44 -2.39 -0.01 3.55 16 31 H 0.01 0.59 7.98 -2.39 -0.02 0.57 16 32 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 33 H 0.06 2.48 8.04 -2.39 -0.02 2.46 16 34 H 0.04 1.78 7.62 -2.39 -0.02 1.76 16 35 H 0.12 3.83 6.31 -2.91 -0.02 3.81 16 36 H 0.11 4.02 6.08 -2.91 -0.02 4.00 16 37 H 0.15 3.01 6.46 -2.91 -0.02 2.99 16 38 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 39 H 0.19 0.46 8.06 -2.91 -0.02 0.44 16 40 H 0.16 2.23 7.98 -2.91 -0.02 2.20 16 Total: -1.00 -66.12 342.26 6.55 -59.57 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 1.04 Total: 12.30 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 4.48 Total: -22.93 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -1.67 Total: -82.59 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.67 Total: -11.43 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -66.12 6.55 -59.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.575 kcal (2) G-P(sol) polarization free energy of solvation -66.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds