Wall clock time and date at job start Tue Mar 31 2020 06:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47433 * 2 1 4 4 C 1.50705 * 109.46955 * 120.00446 * 2 1 3 5 5 O 1.21274 * 119.99940 * 239.99886 * 4 2 1 6 6 N 1.34769 * 119.99822 * 59.99915 * 4 2 1 7 7 C 1.39450 * 120.00022 * 187.10899 * 6 4 2 8 8 C 1.39154 * 119.91764 * 30.58803 * 7 6 4 9 9 C 1.37647 * 120.07397 * 180.28379 * 8 7 6 10 10 C 1.39811 * 119.92583 * 359.44647 * 9 8 7 11 11 C 1.47487 * 120.08277 * 180.29986 * 10 9 8 12 12 O 1.21626 * 119.99951 * 319.81686 * 11 10 9 13 13 N 1.34776 * 119.99724 * 139.81708 * 11 10 9 14 14 C 1.46498 * 120.00065 * 8.87782 * 13 11 10 15 15 C 1.36894 * 119.99882 * 188.87912 * 13 11 10 16 16 H 1.08006 * 119.99581 * 318.49993 * 15 13 11 17 17 C 1.39022 * 120.00506 * 138.50373 * 15 13 11 18 18 N 1.31377 * 119.99722 * 51.98656 * 17 15 13 19 19 Si 1.86797 * 120.00140 * 231.99048 * 17 15 13 20 20 H 1.48510 * 109.47060 * 89.99567 * 19 17 15 21 21 H 1.48502 * 109.47362 * 209.99506 * 19 17 15 22 22 H 1.48500 * 109.47146 * 329.99819 * 19 17 15 23 23 C 1.39816 * 119.83639 * 0.27887 * 10 9 8 24 24 C 1.37643 * 119.92366 * 0.02562 * 23 10 9 25 25 H 1.09007 * 109.46946 * 59.99952 * 1 2 3 26 26 H 1.09001 * 109.47568 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47308 * 299.99680 * 1 2 3 28 28 H 1.09005 * 109.46957 * 240.00004 * 2 1 3 29 29 H 1.09001 * 109.47245 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47606 * 300.00353 * 3 2 1 31 31 H 1.09005 * 109.47045 * 60.00058 * 3 2 1 32 32 H 0.96995 * 120.00676 * 7.10756 * 6 4 2 33 33 H 1.07996 * 119.96302 * 0.02562 * 8 7 6 34 34 H 1.08002 * 120.03826 * 179.72251 * 9 8 7 35 35 H 1.08999 * 109.47312 * 96.12568 * 14 13 11 36 36 H 1.09007 * 109.47028 * 216.11794 * 14 13 11 37 37 H 1.08998 * 109.47356 * 336.12293 * 14 13 11 38 38 H 0.97005 * 119.99802 * 180.02562 * 18 17 15 39 39 H 1.08010 * 120.03782 * 180.02562 * 23 10 9 40 40 H 1.08003 * 119.96477 * 180.02562 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -0.1212 2.0288 6 7 1.7066 -2.0008 1.4436 7 6 2.0445 -2.6153 2.6490 8 6 2.1105 -1.8622 3.8173 9 6 2.4494 -2.4643 5.0078 10 6 2.7162 -3.8362 5.0445 11 6 3.0731 -4.4861 6.3194 12 8 3.8129 -3.9224 7.1031 13 7 2.5796 -5.7047 6.6159 14 6 1.8508 -6.4671 5.5991 15 6 2.7593 -6.2300 7.8672 16 1 3.7105 -6.1212 8.3670 17 6 1.7174 -6.9036 8.4946 18 7 1.0949 -7.8777 7.8705 19 14 1.2026 -6.4234 10.2248 20 1 0.1532 -5.3749 10.1560 21 1 0.6663 -7.6149 10.9304 22 1 2.3790 -5.8985 10.9636 23 6 2.6433 -4.5907 3.8696 24 6 2.3099 -3.9808 2.6815 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.2373 -2.5021 0.7587 33 1 1.8997 -0.8034 3.7891 34 1 2.5048 -1.8784 5.9134 35 1 2.5307 -7.1667 5.1129 36 1 1.0384 -7.0192 6.0718 37 1 1.4411 -5.7828 4.8561 38 1 0.3677 -8.3475 8.3082 39 1 2.8483 -5.6509 3.8942 40 1 2.2530 -4.5631 1.7736 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101515335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:03 Heat of formation + Delta-G solvation = -45.702880 kcal Electronic energy + Delta-G solvation = -22618.477611 eV Core-core repulsion = 19205.225392 eV Total energy + Delta-G solvation = -3413.252219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.81085 -40.75945 -38.97151 -36.71594 -35.89841 -35.45079 -34.06530 -32.04405 -30.91471 -28.19149 -27.96546 -26.83859 -25.24472 -23.90447 -23.24167 -21.18278 -20.86614 -19.18069 -18.67651 -18.28972 -17.93270 -16.93079 -16.72935 -16.21623 -16.11047 -15.75419 -15.40549 -15.20175 -14.89940 -14.72161 -14.40754 -14.07445 -13.87113 -13.72849 -13.54927 -13.39106 -13.15829 -13.13314 -12.88022 -12.62687 -12.43292 -12.15229 -12.05995 -12.01698 -11.88832 -11.44872 -10.82753 -10.56843 -10.43981 -9.96571 -9.65703 -9.09190 -8.82444 -5.92251 -0.05387 0.39514 1.25398 1.38598 1.45604 1.52079 2.00155 2.10250 2.17822 2.56863 2.84486 3.14925 3.56122 3.86226 3.93875 4.01524 4.04917 4.06311 4.33687 4.41504 4.49889 4.58277 4.64635 4.78531 4.86676 4.91584 4.95138 5.01557 5.08836 5.15013 5.20525 5.22796 5.33518 5.35006 5.41045 5.52586 5.54286 5.95821 6.17698 6.41528 6.51516 7.10052 7.11802 7.35625 8.03783 8.26341 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032864 B = 0.003270 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.804413 B = 8560.073429 C = 8754.987739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C -0.136 4.136 4 C 0.507 3.493 5 O -0.563 6.563 6 N -0.654 5.654 7 C 0.158 3.842 8 C -0.135 4.135 9 C -0.073 4.073 10 C -0.139 4.139 11 C 0.473 3.527 12 O -0.636 6.636 13 N -0.443 5.443 14 C 0.053 3.947 15 C -0.420 4.420 16 H 0.059 0.941 17 C 0.072 3.928 18 N -0.804 5.804 19 Si 0.927 3.073 20 H -0.273 1.273 21 H -0.261 1.261 22 H -0.280 1.280 23 C -0.082 4.082 24 C -0.134 4.134 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.132 0.868 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.432 0.568 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.288 0.712 39 H 0.148 0.852 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.026 8.966 -22.808 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.194 4.194 4 C 0.297 3.703 5 O -0.440 6.440 6 N -0.300 5.300 7 C 0.062 3.938 8 C -0.155 4.155 9 C -0.093 4.093 10 C -0.143 4.143 11 C 0.265 3.735 12 O -0.525 6.525 13 N -0.161 5.161 14 C -0.089 4.089 15 C -0.544 4.544 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.433 5.433 19 Si 0.750 3.250 20 H -0.199 1.199 21 H -0.185 1.185 22 H -0.205 1.205 23 C -0.101 4.101 24 C -0.154 4.154 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.150 0.850 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.272 0.728 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.165 0.835 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.393 9.436 -21.939 25.000 hybrid contribution 0.063 -0.135 1.355 1.363 sum -7.329 9.301 -20.584 23.747 Atomic orbital electron populations 1.21841 0.90966 1.03833 1.03490 1.21388 0.98794 0.97290 0.94886 1.21661 1.01008 0.94024 1.02688 1.21830 0.78466 0.81198 0.88838 1.90739 1.37773 1.66665 1.48832 1.43390 1.57893 1.12534 1.16204 1.17872 0.97760 0.92384 0.85778 1.20950 1.03193 1.00578 0.90803 1.20935 0.97227 0.92872 0.98258 1.20015 1.05532 0.94922 0.93865 1.18778 0.85227 0.81685 0.87823 1.90549 1.41497 1.66482 1.53976 1.43457 1.48291 1.12887 1.11440 1.22814 0.98148 0.95934 0.91978 1.18688 0.99663 1.42839 0.93201 0.92350 1.25892 0.94047 0.91789 1.02492 1.70217 1.20073 1.11096 1.41913 0.86034 0.78692 0.79434 0.80856 1.19870 1.18547 1.20542 1.21583 0.97048 1.00595 0.90895 1.21078 1.02489 0.92852 0.98989 0.88998 0.90482 0.93502 0.85046 0.93383 0.89146 0.93711 0.72779 0.85084 0.87206 0.93406 0.89211 0.89847 0.90138 0.83488 0.80669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.10 71.98 0.66 -0.36 16 2 C -0.10 -1.09 3.26 -11.54 -0.04 -1.13 16 3 C -0.14 -1.79 8.48 71.98 0.61 -1.18 16 4 C 0.51 10.20 6.87 87.66 0.60 10.80 16 5 O -0.56 -17.30 13.55 -3.01 -0.04 -17.35 16 6 N -0.65 -11.20 5.17 -303.46 -1.57 -12.77 16 7 C 0.16 4.09 6.32 38.37 0.24 4.34 16 8 C -0.13 -4.51 8.63 22.35 0.19 -4.32 16 9 C -0.07 -2.95 9.63 22.51 0.22 -2.73 16 10 C -0.14 -5.99 5.34 -20.08 -0.11 -6.09 16 11 C 0.47 25.92 7.27 86.68 0.63 26.55 16 12 O -0.64 -40.47 16.82 -4.11 -0.07 -40.54 16 13 N -0.44 -24.16 2.99 -662.58 -1.98 -26.15 16 14 C 0.05 2.33 8.57 127.77 1.09 3.43 16 15 C -0.42 -25.08 8.74 84.09 0.73 -24.35 16 16 H 0.06 3.85 7.92 -2.91 -0.02 3.83 16 17 C 0.07 3.86 5.19 84.95 0.44 4.30 16 18 N -0.80 -40.66 11.12 21.68 0.24 -40.42 16 19 Si 0.93 42.51 29.69 68.60 2.04 44.55 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 22 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 23 C -0.08 -2.69 7.36 22.51 0.17 -2.52 16 24 C -0.13 -3.23 9.93 22.35 0.22 -3.01 16 25 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 26 H 0.08 0.33 7.74 -2.39 -0.02 0.31 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.04 0.76 8.10 -2.38 -0.02 0.74 16 32 H 0.43 3.40 8.46 -92.71 -0.78 2.62 16 33 H 0.13 4.43 6.25 -2.91 -0.02 4.41 16 34 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 35 H 0.05 1.96 7.69 -2.39 -0.02 1.94 16 36 H 0.09 4.21 5.31 -2.38 -0.01 4.20 16 37 H 0.08 3.08 4.65 -2.39 -0.01 3.07 16 38 H 0.29 13.11 8.31 -92.70 -0.77 12.34 16 39 H 0.15 4.56 5.55 -2.91 -0.02 4.55 16 40 H 0.18 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -80.32 332.10 4.57 -75.75 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.29 Total: 13.20 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 5.66 Total: 3.72 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -3.31 Total: -79.33 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -0.11 Total: -57.88 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.04 Total: 44.55 kcal Total: -80.32 4.57 -75.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.046 kcal (2) G-P(sol) polarization free energy of solvation -80.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds