Wall clock time and date at job start Tue Mar 31 2020 06:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46892 * 2 1 4 4 N 1.46503 * 109.46811 * 179.97438 * 3 2 1 5 5 C 1.36109 * 119.99854 * 274.26978 * 4 3 2 6 6 H 1.08005 * 119.99565 * 133.64073 * 5 4 3 7 7 C 1.39595 * 120.00302 * 313.64860 * 5 4 3 8 8 N 1.31004 * 119.99818 * 2.86601 * 7 5 4 9 9 Si 1.86801 * 119.99975 * 182.86785 * 7 5 4 10 10 H 1.48495 * 109.46986 * 89.99894 * 9 7 5 11 11 H 1.48504 * 109.47029 * 209.99673 * 9 7 5 12 12 H 1.48504 * 109.46995 * 329.99457 * 9 7 5 13 13 C 1.34774 * 120.00075 * 94.27535 * 4 3 2 14 14 O 1.21516 * 119.99854 * 354.83148 * 13 4 3 15 15 C 1.48729 * 119.99865 * 174.83258 * 13 4 3 16 16 O 1.21463 * 120.00411 * 4.97220 * 15 13 4 17 17 N 1.34783 * 119.99644 * 184.97300 * 15 13 4 18 18 C 1.39727 * 119.99693 * 185.17453 * 17 15 13 19 19 C 1.38927 * 120.07559 * 32.61278 * 18 17 15 20 20 C 1.38095 * 119.92317 * 179.69950 * 19 18 17 21 21 C 1.38295 * 120.07784 * 0.27911 * 20 19 18 22 22 C 1.50693 * 119.92610 * 180.02562 * 21 20 19 23 23 C 1.38301 * 120.14868 * 0.02562 * 21 20 19 24 24 C 1.38091 * 120.07705 * 359.97438 * 23 21 20 25 25 H 1.09000 * 109.46877 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47615 * 300.00304 * 1 2 3 27 27 H 1.09004 * 109.46841 * 60.00530 * 1 2 3 28 28 H 1.09001 * 109.47266 * 239.99987 * 2 1 3 29 29 H 1.09004 * 109.46841 * 119.99470 * 2 1 3 30 30 H 1.08995 * 109.47239 * 59.99466 * 3 2 1 31 31 H 1.09004 * 109.46945 * 299.99406 * 3 2 1 32 32 H 0.97000 * 119.99970 * 180.02562 * 8 7 5 33 33 H 0.96995 * 120.00505 * 5.17342 * 17 15 13 34 34 H 1.07995 * 120.03910 * 359.97275 * 19 18 17 35 35 H 1.08004 * 119.96538 * 180.29232 * 20 19 18 36 36 H 1.08996 * 109.47540 * 89.99557 * 22 21 20 37 37 H 1.09004 * 109.46780 * 209.99889 * 22 21 20 38 38 H 1.08997 * 109.47039 * 329.99528 * 22 21 20 39 39 H 1.07997 * 119.96081 * 180.02562 * 23 21 20 40 40 H 1.08000 * 120.03960 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1851 1.3550 1.1764 6 1 5.0140 0.6691 1.2709 7 6 3.8110 2.1514 2.2601 8 7 2.7708 2.9420 2.1638 9 14 4.7936 2.0898 3.8476 10 1 5.8791 3.1018 3.7974 11 1 3.8979 2.3812 4.9958 12 1 5.3846 0.7374 4.0118 13 6 4.1794 1.5294 -1.1630 14 8 3.5760 1.5130 -2.2176 15 6 5.6622 1.6452 -1.1563 16 8 6.2725 1.5709 -0.1088 17 7 6.3286 1.8328 -2.3127 18 6 7.7259 1.8335 -2.3215 19 6 8.4282 1.0319 -1.4303 20 6 9.8090 1.0304 -1.4459 21 6 10.4929 1.8299 -2.3435 22 6 11.9997 1.8252 -2.3580 23 6 9.7969 2.6339 -3.2278 24 6 8.4161 2.6403 -3.2177 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9564 -0.8901 32 1 2.5111 3.4956 2.9167 33 1 5.8384 1.9672 -3.1388 34 1 7.8948 0.4074 -0.7290 35 1 10.3556 0.4039 -0.7565 36 1 12.3541 1.0601 -3.0487 37 1 12.3630 2.8013 -2.6794 38 1 12.3720 1.6108 -1.3562 39 1 10.3341 3.2567 -3.9278 40 1 7.8732 3.2680 -3.9088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116733083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:45 Heat of formation + Delta-G solvation = -41.031116 kcal Electronic energy + Delta-G solvation = -23015.161191 eV Core-core repulsion = 19602.111556 eV Total energy + Delta-G solvation = -3413.049636 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.25092 -38.87423 -37.38757 -35.50489 -34.45231 -32.80389 -31.41951 -31.18690 -30.74578 -26.81465 -26.01917 -24.96274 -23.00876 -22.63893 -21.10068 -20.36064 -19.33217 -18.33727 -17.13061 -15.95917 -15.70794 -15.22967 -15.06863 -14.77890 -14.35065 -14.03486 -13.96555 -13.69221 -13.55723 -13.32029 -13.12987 -12.97836 -12.42121 -12.16965 -11.92961 -11.62704 -11.51551 -11.44989 -11.24092 -11.02622 -10.96100 -10.82985 -10.54713 -10.28598 -9.94707 -9.81161 -9.73522 -9.18664 -8.76633 -8.27693 -7.69265 -7.57802 -6.38089 -4.18166 1.43347 1.60096 2.52692 3.17853 3.24049 3.24970 3.34439 3.93382 4.11106 4.36583 4.77736 4.95326 4.98494 5.01150 5.20022 5.35709 5.56796 5.57908 5.67672 5.77217 5.80160 5.86695 5.89750 5.99356 6.11438 6.20473 6.45502 6.48993 6.52787 6.59188 6.64686 6.76891 6.79480 6.82434 7.06095 7.28543 7.32622 7.60908 7.76592 7.82057 8.29434 8.66911 8.97033 9.26173 9.68774 10.54964 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017484 B = 0.004721 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.104717 B = 5929.354812 C = 7091.342073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.093 3.907 4 N -0.384 5.384 5 C -0.317 4.317 6 H 0.106 0.894 7 C 0.048 3.952 8 N -0.864 5.864 9 Si 0.929 3.071 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.438 3.562 14 O -0.601 6.601 15 C 0.506 3.494 16 O -0.478 6.478 17 N -0.667 5.667 18 C 0.161 3.839 19 C -0.122 4.122 20 C -0.099 4.099 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.101 4.101 24 C -0.150 4.150 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.130 0.870 31 H 0.056 0.944 32 H 0.273 0.727 33 H 0.416 0.584 34 H 0.137 0.863 35 H 0.121 0.879 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.121 0.879 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.800 -2.014 -6.056 10.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C -0.029 4.029 4 N -0.100 5.100 5 C -0.446 4.446 6 H 0.124 0.876 7 C -0.159 4.159 8 N -0.501 5.501 9 Si 0.755 3.245 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.191 1.191 13 C 0.223 3.777 14 O -0.489 6.489 15 C 0.291 3.709 16 O -0.348 6.348 17 N -0.314 5.314 18 C 0.065 3.935 19 C -0.142 4.142 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.164 4.164 23 C -0.120 4.120 24 C -0.171 4.171 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.147 0.853 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.252 0.748 34 H 0.155 0.845 35 H 0.139 0.861 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.139 0.861 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.713 -1.966 -5.594 10.539 hybrid contribution 0.171 0.224 0.401 0.490 sum 8.884 -1.743 -5.193 10.437 Atomic orbital electron populations 1.21645 0.96375 1.00491 1.01482 1.21766 0.94832 0.98918 1.01334 1.22045 0.80356 0.95546 1.04947 1.43217 1.05429 1.56636 1.04715 1.19868 1.14657 1.22148 0.87926 0.87617 1.25677 0.95729 0.94062 1.00388 1.69392 1.23969 1.24151 1.32580 0.85887 0.79408 0.79355 0.79827 1.19978 1.20943 1.19115 1.19631 0.86949 0.85591 0.85511 1.90615 1.69491 1.57852 1.30942 1.20615 0.90024 0.77353 0.82878 1.90749 1.69499 1.44619 1.29978 1.43446 1.03970 1.72062 1.11927 1.17834 0.82979 0.95377 0.97267 1.21239 0.94055 0.99012 0.99884 1.20885 0.93592 0.98952 0.98381 1.19822 0.95838 0.98793 0.97448 1.20704 0.91534 1.01987 1.02203 1.20724 0.93214 0.99242 0.98826 1.20890 0.94479 0.99897 1.01850 0.93597 0.92766 0.93188 0.93257 0.91992 0.85280 0.92591 0.91578 0.74752 0.84520 0.86053 0.91671 0.91942 0.91845 0.86121 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.91 37.16 0.37 -1.98 16 2 C -0.13 -2.64 6.24 -26.73 -0.17 -2.81 16 3 C 0.09 2.20 5.06 -4.04 -0.02 2.18 16 4 N -0.38 -9.81 2.50 -115.61 -0.29 -10.10 16 5 C -0.32 -8.31 7.47 -15.15 -0.11 -8.42 16 6 H 0.11 2.83 6.42 -52.48 -0.34 2.49 16 7 C 0.05 1.23 5.40 -17.40 -0.09 1.13 16 8 N -0.86 -22.45 10.77 55.53 0.60 -21.85 16 9 Si 0.93 20.52 29.56 -169.99 -5.02 15.49 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.44 10.88 7.66 -11.92 -0.09 10.79 16 14 O -0.60 -15.19 16.06 5.35 0.09 -15.10 16 15 C 0.51 11.51 7.51 -11.92 -0.09 11.42 16 16 O -0.48 -11.68 11.24 5.40 0.06 -11.62 16 17 N -0.67 -12.47 5.32 -10.47 -0.06 -12.53 16 18 C 0.16 2.75 6.29 -83.75 -0.53 2.22 16 19 C -0.12 -2.08 8.66 -39.38 -0.34 -2.42 16 20 C -0.10 -1.42 9.69 -39.61 -0.38 -1.80 16 21 C -0.12 -1.50 5.88 -104.58 -0.62 -2.11 16 22 C -0.11 -1.00 10.01 36.00 0.36 -0.64 16 23 C -0.10 -1.28 9.69 -39.61 -0.38 -1.66 16 24 C -0.15 -2.14 9.96 -39.38 -0.39 -2.53 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.13 3.22 5.20 -51.93 -0.27 2.95 16 31 H 0.06 1.34 7.37 -51.93 -0.38 0.96 16 32 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 33 H 0.42 7.03 8.30 -40.82 -0.34 6.69 16 34 H 0.14 2.57 6.36 -52.49 -0.33 2.24 16 35 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 38 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 337.35 15.07 5.08 5.08 Total: -1.00 -29.23 337.35 -7.47 -36.71 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.44 Total: 10.56 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -2.49 Total: 3.36 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: 0.25 Total: -44.48 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: 0.15 Total: -26.72 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.23 -7.47 -36.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116733083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.325 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds