Wall clock time and date at job start Tue Mar 31 2020 06:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46892 * 2 1 4 4 N 1.46503 * 109.46811 * 179.97438 * 3 2 1 5 5 C 1.36109 * 119.99854 * 274.26978 * 4 3 2 6 6 H 1.08005 * 119.99565 * 133.64073 * 5 4 3 7 7 C 1.39595 * 120.00302 * 313.64860 * 5 4 3 8 8 N 1.31004 * 119.99818 * 2.86601 * 7 5 4 9 9 Si 1.86801 * 119.99975 * 182.86785 * 7 5 4 10 10 H 1.48495 * 109.46986 * 89.99894 * 9 7 5 11 11 H 1.48504 * 109.47029 * 209.99673 * 9 7 5 12 12 H 1.48504 * 109.46995 * 329.99457 * 9 7 5 13 13 C 1.34774 * 120.00075 * 94.27535 * 4 3 2 14 14 O 1.21516 * 119.99854 * 354.83148 * 13 4 3 15 15 C 1.48729 * 119.99865 * 174.83258 * 13 4 3 16 16 O 1.21463 * 120.00411 * 4.97220 * 15 13 4 17 17 N 1.34783 * 119.99644 * 184.97300 * 15 13 4 18 18 C 1.39727 * 119.99693 * 185.17453 * 17 15 13 19 19 C 1.38927 * 120.07559 * 32.61278 * 18 17 15 20 20 C 1.38095 * 119.92317 * 179.69950 * 19 18 17 21 21 C 1.38295 * 120.07784 * 0.27911 * 20 19 18 22 22 C 1.50693 * 119.92610 * 180.02562 * 21 20 19 23 23 C 1.38301 * 120.14868 * 0.02562 * 21 20 19 24 24 C 1.38091 * 120.07705 * 359.97438 * 23 21 20 25 25 H 1.09000 * 109.46877 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47615 * 300.00304 * 1 2 3 27 27 H 1.09004 * 109.46841 * 60.00530 * 1 2 3 28 28 H 1.09001 * 109.47266 * 239.99987 * 2 1 3 29 29 H 1.09004 * 109.46841 * 119.99470 * 2 1 3 30 30 H 1.08995 * 109.47239 * 59.99466 * 3 2 1 31 31 H 1.09004 * 109.46945 * 299.99406 * 3 2 1 32 32 H 0.97000 * 119.99970 * 180.02562 * 8 7 5 33 33 H 0.96995 * 120.00505 * 5.17342 * 17 15 13 34 34 H 1.07995 * 120.03910 * 359.97275 * 19 18 17 35 35 H 1.08004 * 119.96538 * 180.29232 * 20 19 18 36 36 H 1.08996 * 109.47540 * 89.99557 * 22 21 20 37 37 H 1.09004 * 109.46780 * 209.99889 * 22 21 20 38 38 H 1.08997 * 109.47039 * 329.99528 * 22 21 20 39 39 H 1.07997 * 119.96081 * 180.02562 * 23 21 20 40 40 H 1.08000 * 120.03960 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1851 1.3550 1.1764 6 1 5.0140 0.6691 1.2709 7 6 3.8110 2.1514 2.2601 8 7 2.7708 2.9420 2.1638 9 14 4.7936 2.0898 3.8476 10 1 5.8791 3.1018 3.7974 11 1 3.8979 2.3812 4.9958 12 1 5.3846 0.7374 4.0118 13 6 4.1794 1.5294 -1.1630 14 8 3.5760 1.5130 -2.2176 15 6 5.6622 1.6452 -1.1563 16 8 6.2725 1.5709 -0.1088 17 7 6.3286 1.8328 -2.3127 18 6 7.7259 1.8335 -2.3215 19 6 8.4282 1.0319 -1.4303 20 6 9.8090 1.0304 -1.4459 21 6 10.4929 1.8299 -2.3435 22 6 11.9997 1.8252 -2.3580 23 6 9.7969 2.6339 -3.2278 24 6 8.4161 2.6403 -3.2177 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9564 -0.8901 32 1 2.5111 3.4956 2.9167 33 1 5.8384 1.9672 -3.1388 34 1 7.8948 0.4074 -0.7290 35 1 10.3556 0.4039 -0.7565 36 1 12.3541 1.0601 -3.0487 37 1 12.3630 2.8013 -2.6794 38 1 12.3720 1.6108 -1.3562 39 1 10.3341 3.2567 -3.9278 40 1 7.8732 3.2680 -3.9088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116733083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:45 Heat of formation + Delta-G solvation = -57.620402 kcal Electronic energy + Delta-G solvation = -23015.880557 eV Core-core repulsion = 19602.111556 eV Total energy + Delta-G solvation = -3413.769001 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86602 -40.38816 -39.02106 -37.39928 -35.94417 -34.55056 -33.24403 -32.40929 -31.87574 -28.27040 -27.60659 -26.69104 -24.52562 -23.86415 -22.52142 -21.86213 -21.14518 -20.08867 -18.59965 -17.76096 -17.49599 -16.86914 -16.44302 -16.30119 -16.02918 -15.67695 -15.54048 -15.00728 -14.89516 -14.61893 -14.52639 -14.31841 -13.99468 -13.47445 -13.35236 -13.17085 -13.02327 -12.92968 -12.69203 -12.62544 -12.44943 -12.21671 -12.01886 -11.98547 -11.79053 -11.50361 -11.19211 -11.08210 -10.19534 -9.86244 -9.55819 -8.94499 -8.32983 -6.20115 0.14012 0.46862 0.81699 1.39599 1.45225 1.51404 1.71462 2.28678 2.40292 2.86592 3.01390 3.10104 3.85762 3.98836 4.04770 4.13507 4.21164 4.31522 4.44399 4.50426 4.54722 4.60527 4.77001 4.87254 4.92650 4.97650 5.09763 5.10351 5.16741 5.23721 5.35047 5.37405 5.39975 5.41930 5.54669 5.66661 5.70657 5.87694 6.09585 6.20355 6.38543 6.90721 7.01651 7.32774 7.71589 8.60047 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017484 B = 0.004721 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.104717 B = 5929.354812 C = 7091.342073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.121 4.121 3 C 0.093 3.907 4 N -0.396 5.396 5 C -0.332 4.332 6 H 0.094 0.906 7 C 0.013 3.987 8 N -0.884 5.884 9 Si 0.986 3.014 10 H -0.282 1.282 11 H -0.267 1.267 12 H -0.264 1.264 13 C 0.426 3.574 14 O -0.612 6.612 15 C 0.506 3.494 16 O -0.504 6.504 17 N -0.651 5.651 18 C 0.123 3.877 19 C -0.144 4.144 20 C -0.108 4.108 21 C -0.109 4.109 22 C -0.107 4.107 23 C -0.099 4.099 24 C -0.145 4.145 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.118 0.882 31 H 0.045 0.955 32 H 0.279 0.721 33 H 0.422 0.578 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.158 0.842 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.675 -1.619 -6.646 12.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C -0.029 4.029 4 N -0.112 5.112 5 C -0.461 4.461 6 H 0.111 0.889 7 C -0.192 4.192 8 N -0.521 5.521 9 Si 0.809 3.191 10 H -0.208 1.208 11 H -0.192 1.192 12 H -0.188 1.188 13 C 0.211 3.789 14 O -0.501 6.501 15 C 0.290 3.710 16 O -0.376 6.376 17 N -0.299 5.299 18 C 0.029 3.971 19 C -0.164 4.164 20 C -0.127 4.127 21 C -0.109 4.109 22 C -0.163 4.163 23 C -0.117 4.117 24 C -0.165 4.165 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.260 0.740 34 H 0.126 0.874 35 H 0.156 0.844 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.176 0.824 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.593 -1.573 -6.217 12.383 hybrid contribution -0.282 0.119 0.455 0.548 sum 10.312 -1.454 -5.762 11.902 Atomic orbital electron populations 1.21595 0.93162 1.02411 1.01986 1.21677 0.97569 0.96356 1.00389 1.22069 0.79727 0.97479 1.03667 1.43445 1.06210 1.56711 1.04861 1.19834 1.14842 1.22847 0.88591 0.88882 1.26359 0.96419 0.93570 1.02818 1.69472 1.24613 1.24462 1.33569 0.85046 0.78027 0.79066 0.76922 1.20812 1.19204 1.18779 1.20097 0.88241 0.85237 0.85300 1.90576 1.70133 1.58334 1.31106 1.20264 0.89181 0.77717 0.83789 1.90727 1.69571 1.46309 1.31032 1.43201 1.05023 1.70855 1.10795 1.18101 0.81847 0.97731 0.99425 1.21184 0.95481 0.99696 1.00080 1.21124 0.92454 0.99728 0.99365 1.20306 0.97931 0.96903 0.95789 1.20791 0.88612 1.03654 1.03261 1.21195 0.92537 0.99003 0.98962 1.21179 0.95468 0.98978 1.00889 0.90957 0.92412 0.92535 0.94171 0.92842 0.86464 0.93635 0.91078 0.73961 0.87416 0.84415 0.89997 0.90130 0.91191 0.82397 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 9.91 71.98 0.71 -3.58 16 2 C -0.12 -5.00 6.24 30.60 0.19 -4.81 16 3 C 0.09 4.51 5.06 86.38 0.44 4.95 16 4 N -0.40 -21.03 2.50 -637.97 -1.59 -22.62 16 5 C -0.33 -18.03 7.47 84.36 0.63 -17.40 16 6 H 0.09 5.22 6.42 -2.91 -0.02 5.20 16 7 C 0.01 0.65 5.40 85.14 0.46 1.11 16 8 N -0.88 -46.61 10.77 21.77 0.23 -46.38 16 9 Si 0.99 42.45 29.56 68.60 2.03 44.48 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 12 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 13 C 0.43 22.01 7.66 87.05 0.67 22.68 16 14 O -0.61 -31.91 16.06 -3.77 -0.06 -31.98 16 15 C 0.51 24.01 7.51 87.05 0.65 24.67 16 16 O -0.50 -25.82 11.24 -3.60 -0.04 -25.86 16 17 N -0.65 -25.05 5.32 -305.35 -1.62 -26.68 16 18 C 0.12 4.22 6.29 38.21 0.24 4.46 16 19 C -0.14 -5.06 8.66 22.40 0.19 -4.87 16 20 C -0.11 -2.98 9.69 22.25 0.22 -2.77 16 21 C -0.11 -2.43 5.88 -19.84 -0.12 -2.55 16 22 C -0.11 -1.55 10.01 71.23 0.71 -0.84 16 23 C -0.10 -2.15 9.69 22.25 0.22 -1.93 16 24 C -0.14 -3.85 9.96 22.40 0.22 -3.63 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.12 6.02 5.20 -2.39 -0.01 6.01 16 31 H 0.05 2.25 7.37 -2.39 -0.02 2.23 16 32 H 0.28 13.69 8.30 -92.71 -0.77 12.92 16 33 H 0.42 14.58 8.30 -92.71 -0.77 13.81 16 34 H 0.11 4.35 6.36 -2.91 -0.02 4.33 16 35 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 37 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 38 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 39 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -65.14 337.35 4.67 -60.47 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.29 Total: 33.05 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 5.44 Total: 15.50 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -2.98 Total: -95.67 kcal Atomic # 8 Polarization: -57.73 SS G_CDS: -0.10 Total: -57.83 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -65.14 4.67 -60.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116733083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.847 kcal (2) G-P(sol) polarization free energy of solvation -65.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds