Wall clock time and date at job start Tue Mar 31 2020 05:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47537 * 2 1 4 4 C 1.38129 * 120.03817 * 265.00745 * 3 2 1 5 5 C 1.38255 * 120.07081 * 179.72057 * 4 3 2 6 6 C 1.38307 * 120.14169 * 0.25191 * 5 4 3 7 7 C 1.38087 * 120.07191 * 0.02615 * 6 5 4 8 8 C 1.38851 * 120.03150 * 85.25336 * 3 2 1 9 9 N 1.39929 * 120.07421 * 0.03039 * 8 3 2 10 10 C 1.34770 * 120.00002 * 145.57532 * 9 8 3 11 11 O 1.21278 * 120.00383 * 4.45140 * 10 9 8 12 12 C 1.50702 * 119.99640 * 184.45746 * 10 9 8 13 13 N 1.46501 * 109.47122 * 179.97438 * 12 10 9 14 14 C 1.46503 * 120.00011 * 89.99457 * 13 12 10 15 15 C 1.34778 * 120.00073 * 269.99839 * 13 12 10 16 16 O 1.21685 * 119.99649 * 359.97438 * 15 13 12 17 17 C 1.46379 * 120.00018 * 179.97438 * 15 13 12 18 18 H 1.07998 * 119.99571 * 5.15271 * 17 15 13 19 19 C 1.40047 * 119.99679 * 185.15418 * 17 15 13 20 20 N 1.30670 * 120.00022 * 354.95293 * 19 17 15 21 21 Si 1.86803 * 119.99509 * 174.95365 * 19 17 15 22 22 H 1.48500 * 109.47225 * 95.00073 * 21 19 17 23 23 H 1.48504 * 109.46616 * 214.99781 * 21 19 17 24 24 H 1.48494 * 109.47218 * 334.99781 * 21 19 17 25 25 H 1.09003 * 109.47686 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46806 * 299.99743 * 1 2 3 27 27 H 1.08999 * 109.47603 * 59.99331 * 1 2 3 28 28 H 1.09007 * 109.46806 * 240.00256 * 2 1 3 29 29 H 1.08999 * 109.47603 * 120.00669 * 2 1 3 30 30 H 1.07996 * 119.96339 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.93277 * 180.23383 * 5 4 3 32 32 H 1.07998 * 119.96436 * 179.97438 * 6 5 4 33 33 H 1.08000 * 120.03896 * 179.97438 * 7 6 5 34 34 H 0.97000 * 119.99528 * 325.56643 * 9 8 3 35 35 H 1.08999 * 109.46930 * 299.99091 * 12 10 9 36 36 H 1.09000 * 109.47815 * 59.99668 * 12 10 9 37 37 H 1.09007 * 109.47023 * 90.00363 * 14 13 12 38 38 H 1.08995 * 109.47435 * 209.99971 * 14 13 12 39 39 H 1.09002 * 109.47403 * 330.00262 * 14 13 12 40 40 H 0.97006 * 119.99613 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3610 2.0380 -1.1912 5 6 2.8165 3.3433 -1.1925 6 6 2.9497 4.0336 -0.0015 7 6 2.6283 3.4204 1.1933 8 6 2.1703 2.1091 1.1980 9 7 1.8437 1.4849 2.4070 10 6 2.5471 1.7655 3.5218 11 8 3.4096 2.6177 3.4962 12 6 2.2619 1.0202 4.8002 13 7 3.1532 1.5047 5.8571 14 6 2.7412 2.6253 6.7062 15 6 4.3522 0.9196 6.0484 16 8 4.6941 -0.0114 5.3434 17 6 5.2429 1.4041 7.1041 18 1 4.9069 2.1739 7.7830 19 6 6.5307 0.8693 7.2337 20 7 6.9027 -0.1292 6.4774 21 14 7.7167 1.5835 8.4879 22 1 7.6459 0.7924 9.7426 23 1 9.0989 1.5319 7.9474 24 1 7.3480 2.9940 8.7706 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.2581 1.5016 -2.1229 31 1 3.0693 3.8250 -2.1256 32 1 3.3061 5.0531 -0.0058 33 1 2.7328 3.9598 2.1231 34 1 1.1110 0.8502 2.4426 35 1 1.2255 1.1863 5.0940 36 1 2.4292 -0.0456 4.6446 37 1 2.2116 2.2440 7.5794 38 1 3.6223 3.1796 7.0292 39 1 2.0829 3.2860 6.1419 40 1 7.7947 -0.4998 6.5675 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119556367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:28 Heat of formation + Delta-G solvation = -43.010477 kcal Electronic energy + Delta-G solvation = -23001.244810 eV Core-core repulsion = 19588.109343 eV Total energy + Delta-G solvation = -3413.135467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42458 -38.60510 -37.16820 -34.76476 -33.86436 -33.64675 -32.43371 -30.18467 -29.38019 -28.02673 -25.98611 -24.78881 -23.88967 -22.77687 -20.92227 -20.37597 -19.16647 -17.51846 -16.75749 -16.54359 -15.85385 -15.65024 -15.28740 -14.62016 -14.52084 -14.16019 -13.94595 -13.79047 -13.62324 -13.56117 -13.08179 -12.64079 -12.33800 -12.20432 -11.91578 -11.62473 -11.53792 -11.41795 -11.35932 -11.12535 -11.02350 -10.92652 -10.91700 -10.24601 -10.14785 -10.08653 -9.44044 -8.82646 -8.64343 -7.91960 -7.64463 -7.31579 -6.19339 -4.62625 1.40026 1.52074 3.02272 3.15306 3.22213 3.25836 3.30832 3.92027 4.10423 4.53768 4.57542 4.71149 4.82704 5.05328 5.12666 5.19875 5.26597 5.40639 5.49307 5.56218 5.61762 5.72886 5.79906 5.80376 5.90813 5.95948 6.01709 6.06577 6.17857 6.41254 6.45773 6.55583 6.59250 6.64082 6.71465 7.20757 7.44871 7.46186 7.66696 8.07708 8.31009 8.56928 9.03511 9.36839 10.56628 10.75559 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021857 B = 0.003899 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.724860 B = 7179.883184 C = 7410.395865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.115 4.115 4 C -0.103 4.103 5 C -0.142 4.142 6 C -0.107 4.107 7 C -0.121 4.121 8 C 0.161 3.839 9 N -0.682 5.682 10 C 0.492 3.508 11 O -0.498 6.498 12 C 0.112 3.888 13 N -0.629 5.629 14 C 0.106 3.894 15 C 0.561 3.439 16 O -0.576 6.576 17 C -0.538 4.538 18 H 0.073 0.927 19 C 0.087 3.913 20 N -0.766 5.766 21 Si 0.908 3.092 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.264 1.264 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.405 0.595 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.579 3.789 -10.951 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.121 4.121 5 C -0.161 4.161 6 C -0.126 4.126 7 C -0.141 4.141 8 C 0.066 3.934 9 N -0.329 5.329 10 C 0.279 3.721 11 O -0.370 6.370 12 C -0.017 4.017 13 N -0.366 5.366 14 C -0.039 4.039 15 C 0.367 3.633 16 O -0.459 6.459 17 C -0.574 4.574 18 H 0.091 0.909 19 C -0.133 4.133 20 N -0.395 5.395 21 Si 0.732 3.268 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.188 1.188 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.156 0.844 34 H 0.241 0.759 35 H 0.105 0.895 36 H 0.124 0.876 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.571 3.729 -11.260 17.284 hybrid contribution 0.289 0.165 0.499 0.599 sum -12.282 3.894 -10.762 16.788 Atomic orbital electron populations 1.21767 0.94866 1.01731 1.02025 1.20487 0.95873 0.92677 1.03361 1.19679 1.03717 0.96113 0.92263 1.20770 0.99587 0.95048 0.96712 1.21034 1.02039 0.95072 0.97941 1.21030 0.99557 0.99912 0.92094 1.21335 1.00251 0.93225 0.99317 1.17669 0.99148 0.91555 0.85069 1.43825 1.35834 1.45816 1.07454 1.22324 0.80680 0.83625 0.85503 1.90676 1.30625 1.31444 1.84242 1.20862 0.95097 0.99920 0.85812 1.47765 1.19430 1.36379 1.33054 1.21402 1.00181 0.89125 0.93157 1.18276 0.78402 0.81862 0.84740 1.90588 1.73244 1.31148 1.50888 1.20945 0.98152 1.22879 1.15472 0.90867 1.25740 0.98464 0.93594 0.95493 1.70025 1.18254 1.18397 1.32802 0.86356 0.79646 0.80148 0.80639 1.19799 1.20391 1.18760 0.92203 0.92880 0.92462 0.90784 0.90814 0.86142 0.86372 0.86076 0.84354 0.75882 0.89525 0.87643 0.94765 0.90659 0.94193 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.83 37.15 0.37 -0.86 16 2 C -0.09 -0.92 5.47 -27.89 -0.15 -1.07 16 3 C -0.12 -1.52 5.15 -104.44 -0.54 -2.05 16 4 C -0.10 -1.23 9.68 -39.62 -0.38 -1.61 16 5 C -0.14 -1.72 10.04 -39.55 -0.40 -2.12 16 6 C -0.11 -1.47 10.04 -39.61 -0.40 -1.87 16 7 C -0.12 -1.96 8.70 -39.39 -0.34 -2.31 16 8 C 0.16 2.49 6.29 -83.69 -0.53 1.96 16 9 N -0.68 -10.21 4.78 -9.86 -0.05 -10.26 16 10 C 0.49 9.44 7.74 -10.99 -0.09 9.36 16 11 O -0.50 -11.76 13.85 5.56 0.08 -11.68 16 12 C 0.11 2.08 5.89 -5.19 -0.03 2.05 16 13 N -0.63 -14.49 2.36 -184.62 -0.44 -14.93 16 14 C 0.11 2.00 10.12 59.85 0.61 2.61 16 15 C 0.56 16.28 7.61 -12.98 -0.10 16.18 16 16 O -0.58 -18.83 14.61 5.20 0.08 -18.76 16 17 C -0.54 -15.46 8.68 -35.63 -0.31 -15.77 16 18 H 0.07 1.92 6.09 -52.49 -0.32 1.60 16 19 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 20 N -0.77 -23.40 11.85 55.55 0.66 -22.75 16 21 Si 0.91 20.54 29.56 -169.99 -5.03 15.51 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.43 7.32 -51.93 -0.38 0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 29 H 0.07 0.85 7.42 -51.93 -0.39 0.47 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 33 H 0.14 2.49 6.20 -52.49 -0.33 2.16 16 34 H 0.41 4.61 7.06 -40.82 -0.29 4.32 16 35 H 0.09 1.18 8.07 -51.93 -0.42 0.76 16 36 H 0.11 2.05 7.42 -51.93 -0.39 1.66 16 37 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 38 H 0.07 1.53 6.16 -51.93 -0.32 1.21 16 39 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 40 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 LS Contribution 337.81 15.07 5.09 5.09 Total: -1.00 -37.89 337.81 -7.32 -45.21 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.33 Total: 5.69 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -2.39 Total: 6.88 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.17 Total: -47.93 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: 0.15 Total: -30.44 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -37.89 -7.32 -45.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119556367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.198 kcal (2) G-P(sol) polarization free energy of solvation -37.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds