Wall clock time and date at job start Tue Mar 31 2020 05:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47537 * 2 1 4 4 C 1.38129 * 120.03817 * 265.00745 * 3 2 1 5 5 C 1.38255 * 120.07081 * 179.72057 * 4 3 2 6 6 C 1.38307 * 120.14169 * 0.25191 * 5 4 3 7 7 C 1.38087 * 120.07191 * 0.02615 * 6 5 4 8 8 C 1.38851 * 120.03150 * 85.25336 * 3 2 1 9 9 N 1.39929 * 120.07421 * 0.03039 * 8 3 2 10 10 C 1.34770 * 120.00002 * 145.57532 * 9 8 3 11 11 O 1.21278 * 120.00383 * 4.45140 * 10 9 8 12 12 C 1.50702 * 119.99640 * 184.45746 * 10 9 8 13 13 N 1.46501 * 109.47122 * 179.97438 * 12 10 9 14 14 C 1.46503 * 120.00011 * 89.99457 * 13 12 10 15 15 C 1.34778 * 120.00073 * 269.99839 * 13 12 10 16 16 O 1.21685 * 119.99649 * 359.97438 * 15 13 12 17 17 C 1.46379 * 120.00018 * 179.97438 * 15 13 12 18 18 H 1.07998 * 119.99571 * 5.15271 * 17 15 13 19 19 C 1.40047 * 119.99679 * 185.15418 * 17 15 13 20 20 N 1.30670 * 120.00022 * 354.95293 * 19 17 15 21 21 Si 1.86803 * 119.99509 * 174.95365 * 19 17 15 22 22 H 1.48500 * 109.47225 * 95.00073 * 21 19 17 23 23 H 1.48504 * 109.46616 * 214.99781 * 21 19 17 24 24 H 1.48494 * 109.47218 * 334.99781 * 21 19 17 25 25 H 1.09003 * 109.47686 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46806 * 299.99743 * 1 2 3 27 27 H 1.08999 * 109.47603 * 59.99331 * 1 2 3 28 28 H 1.09007 * 109.46806 * 240.00256 * 2 1 3 29 29 H 1.08999 * 109.47603 * 120.00669 * 2 1 3 30 30 H 1.07996 * 119.96339 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.93277 * 180.23383 * 5 4 3 32 32 H 1.07998 * 119.96436 * 179.97438 * 6 5 4 33 33 H 1.08000 * 120.03896 * 179.97438 * 7 6 5 34 34 H 0.97000 * 119.99528 * 325.56643 * 9 8 3 35 35 H 1.08999 * 109.46930 * 299.99091 * 12 10 9 36 36 H 1.09000 * 109.47815 * 59.99668 * 12 10 9 37 37 H 1.09007 * 109.47023 * 90.00363 * 14 13 12 38 38 H 1.08995 * 109.47435 * 209.99971 * 14 13 12 39 39 H 1.09002 * 109.47403 * 330.00262 * 14 13 12 40 40 H 0.97006 * 119.99613 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3610 2.0380 -1.1912 5 6 2.8165 3.3433 -1.1925 6 6 2.9497 4.0336 -0.0015 7 6 2.6283 3.4204 1.1933 8 6 2.1703 2.1091 1.1980 9 7 1.8437 1.4849 2.4070 10 6 2.5471 1.7655 3.5218 11 8 3.4096 2.6177 3.4962 12 6 2.2619 1.0202 4.8002 13 7 3.1532 1.5047 5.8571 14 6 2.7412 2.6253 6.7062 15 6 4.3522 0.9196 6.0484 16 8 4.6941 -0.0114 5.3434 17 6 5.2429 1.4041 7.1041 18 1 4.9069 2.1739 7.7830 19 6 6.5307 0.8693 7.2337 20 7 6.9027 -0.1292 6.4774 21 14 7.7167 1.5835 8.4879 22 1 7.6459 0.7924 9.7426 23 1 9.0989 1.5319 7.9474 24 1 7.3480 2.9940 8.7706 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.2581 1.5016 -2.1229 31 1 3.0693 3.8250 -2.1256 32 1 3.3061 5.0531 -0.0058 33 1 2.7328 3.9598 2.1231 34 1 1.1110 0.8502 2.4426 35 1 1.2255 1.1863 5.0940 36 1 2.4292 -0.0456 4.6446 37 1 2.2116 2.2440 7.5794 38 1 3.6223 3.1796 7.0292 39 1 2.0829 3.2860 6.1419 40 1 7.7947 -0.4998 6.5675 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119556367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:27 Heat of formation + Delta-G solvation = -68.975374 kcal Electronic energy + Delta-G solvation = -23002.370733 eV Core-core repulsion = 19588.109343 eV Total energy + Delta-G solvation = -3414.261390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.72081 -40.05257 -38.99318 -35.98897 -35.71262 -34.75617 -34.61497 -31.45398 -30.43781 -29.46934 -27.94161 -26.49718 -24.77057 -24.05227 -22.11438 -21.72615 -20.91371 -18.79750 -18.46992 -18.14633 -17.71438 -16.93271 -16.54187 -16.29161 -16.01156 -15.77132 -15.33485 -15.07078 -14.69314 -14.51196 -14.29362 -14.19204 -14.08545 -13.42844 -13.16894 -13.12974 -13.09325 -12.89943 -12.74833 -12.70966 -12.57918 -12.20310 -12.03802 -11.88394 -11.85674 -11.33923 -10.98495 -10.88597 -9.86678 -9.70028 -9.20002 -9.04601 -8.31652 -6.85075 0.31287 0.44603 1.37297 1.39221 1.54805 1.57359 1.97747 2.23870 2.48012 2.82923 2.86922 3.56321 3.79028 3.86261 3.91697 4.18903 4.22018 4.29031 4.41815 4.46951 4.47446 4.50688 4.59779 4.63668 4.77479 4.91610 5.01523 5.05706 5.09087 5.13313 5.35230 5.38252 5.39425 5.48156 5.60248 5.61400 5.68602 6.06272 6.11778 6.23784 6.47842 6.86240 7.16319 7.33660 8.43399 8.65079 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021857 B = 0.003899 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.724860 B = 7179.883184 C = 7410.395865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.116 4.116 4 C -0.104 4.104 5 C -0.135 4.135 6 C -0.119 4.119 7 C -0.148 4.148 8 C 0.129 3.871 9 N -0.662 5.662 10 C 0.491 3.509 11 O -0.552 6.552 12 C 0.109 3.891 13 N -0.634 5.634 14 C 0.104 3.896 15 C 0.543 3.457 16 O -0.629 6.629 17 C -0.568 4.568 18 H 0.092 0.908 19 C 0.027 3.973 20 N -0.822 5.822 21 Si 0.995 3.005 22 H -0.256 1.256 23 H -0.275 1.275 24 H -0.250 1.250 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.135 0.865 33 H 0.110 0.890 34 H 0.422 0.578 35 H 0.144 0.856 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.859 4.373 -11.620 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.122 4.122 5 C -0.153 4.153 6 C -0.138 4.138 7 C -0.168 4.168 8 C 0.035 3.965 9 N -0.309 5.309 10 C 0.279 3.721 11 O -0.428 6.428 12 C -0.018 4.018 13 N -0.369 5.369 14 C -0.039 4.039 15 C 0.350 3.650 16 O -0.516 6.516 17 C -0.604 4.604 18 H 0.110 0.890 19 C -0.188 4.188 20 N -0.451 5.451 21 Si 0.814 3.186 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.173 1.173 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.172 0.828 31 H 0.169 0.831 32 H 0.153 0.847 33 H 0.128 0.872 34 H 0.261 0.739 35 H 0.161 0.839 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.956 4.326 -11.951 18.876 hybrid contribution 0.567 0.002 0.559 0.796 sum -13.389 4.328 -11.392 18.105 Atomic orbital electron populations 1.21742 0.92906 1.02881 1.02371 1.20558 0.97520 0.90931 1.03408 1.20028 1.02827 0.97204 0.91737 1.21226 0.98272 0.95189 0.97498 1.21444 1.00309 0.95126 0.98442 1.21276 0.99635 1.00869 0.91983 1.21303 1.02169 0.94076 0.99290 1.17910 1.01026 0.91856 0.85741 1.43491 1.35468 1.45388 1.06582 1.22343 0.80244 0.82960 0.86592 1.90660 1.33087 1.33934 1.85166 1.21148 0.97034 0.98883 0.84778 1.47538 1.18473 1.36688 1.34223 1.21559 1.00091 0.88292 0.93967 1.18618 0.80182 0.81619 0.84600 1.90529 1.75127 1.33393 1.52518 1.21514 0.99123 1.23567 1.16188 0.88978 1.27014 1.00523 0.93513 0.97726 1.70197 1.19168 1.20426 1.35333 0.85047 0.76229 0.79812 0.77482 1.18055 1.20020 1.17286 0.90654 0.92955 0.91727 0.89278 0.92263 0.82848 0.83103 0.84664 0.87185 0.73885 0.83869 0.88827 0.92070 0.92496 0.91357 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.83 71.98 0.71 -1.31 16 2 C -0.09 -1.68 5.47 29.85 0.16 -1.52 16 3 C -0.12 -2.89 5.15 -19.74 -0.10 -2.99 16 4 C -0.10 -2.21 9.68 22.25 0.22 -2.00 16 5 C -0.13 -2.95 10.04 22.29 0.22 -2.73 16 6 C -0.12 -3.23 10.04 22.25 0.22 -3.00 16 7 C -0.15 -4.98 8.70 22.39 0.19 -4.79 16 8 C 0.13 4.03 6.29 38.15 0.24 4.27 16 9 N -0.66 -20.03 4.78 -303.51 -1.45 -21.48 16 10 C 0.49 19.36 7.74 87.66 0.68 20.04 16 11 O -0.55 -27.40 13.85 -3.02 -0.04 -27.44 16 12 C 0.11 4.06 5.89 85.63 0.50 4.57 16 13 N -0.63 -29.55 2.36 -856.25 -2.02 -31.57 16 14 C 0.10 3.84 10.12 127.77 1.29 5.13 16 15 C 0.54 32.67 7.61 86.36 0.66 33.33 16 16 O -0.63 -43.13 14.61 -4.30 -0.06 -43.19 16 17 C -0.57 -33.35 8.68 24.83 0.22 -33.14 16 18 H 0.09 4.85 6.09 -2.91 -0.02 4.83 16 19 C 0.03 1.57 5.50 85.30 0.47 2.04 16 20 N -0.82 -52.03 11.85 21.83 0.26 -51.78 16 21 Si 1.00 42.53 29.56 68.60 2.03 44.55 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 0.74 7.32 -2.38 -0.02 0.73 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 1.46 8.05 -2.38 -0.02 1.44 16 29 H 0.06 1.32 7.42 -2.39 -0.02 1.31 16 30 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.11 4.27 6.20 -2.91 -0.02 4.26 16 34 H 0.42 9.37 7.06 -92.71 -0.65 8.72 16 35 H 0.14 3.58 8.07 -2.39 -0.02 3.56 16 36 H 0.09 3.73 7.42 -2.39 -0.02 3.71 16 37 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.06 2.30 6.16 -2.39 -0.01 2.29 16 39 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 40 H 0.27 15.68 8.29 -92.70 -0.77 14.91 16 Total: -1.00 -88.33 337.81 4.80 -83.53 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.41 Total: 29.48 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 5.68 Total: 17.90 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -3.22 Total: -104.83 kcal Atomic # 8 Polarization: -70.53 SS G_CDS: -0.10 Total: -70.63 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -88.33 4.80 -83.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119556367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.555 kcal (2) G-P(sol) polarization free energy of solvation -88.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds